prot_Ecto-sp9_F_contig9952.18018.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9952.18018.1
Unique Name	prot_Ecto-sp9_F_contig9952.18018.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	61

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.260e-31
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0

Query:    7 GCAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSALLHWGLRLCPT 60
            GCAWDGGCLLCVVSCLHAVTVFQPP+DSPDGMEWEPLATVSSALLHWGLR+CPT
Sbjct:  115 GCAWDGGCLLCVVSCLHAVTVFQPPKDSPDGMEWEPLATVSSALLHWGLRVCPT 168

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BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Match: TFIIIC_delta (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.550e-10
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0

Query:    2 AWSPRGCAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSALLH 52
            AWSP GCAWDGGCLL ++  +H + V+ PPRD+     W PL ++S A L 
Sbjct:  172 AWSPVGCAWDGGCLLALLDNVHCLRVYAPPRDAAQ-FSWSPLLSISDAALR 221

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9952.18018.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	2.260e-31	96.30	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
TFIIIC_delta	1.550e-10	50.98	domain-containing protein n=1 Tax=Tribonema minus ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..24
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..60
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9952	contig	Ecto-sp9_F_contig9952:623..1338 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9952.18018.1	mRNA_Ecto-sp9_F_contig9952.18018.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9952 623..1368 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9952.18018.1 ID=prot_Ecto-sp9_F_contig9952.18018.1|Name=mRNA_Ecto-sp9_F_contig9952.18018.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=61bp
MAWSPRGCAWDGGCLLCVVSCLHAVTVFQPPRDSPDGMEWEPLATVSSAL
LHWGLRLCPT*