mRNA_Ecto-sp9_F_contig9890.17962.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9890.17962.1
Unique NamemRNA_Ecto-sp9_F_contig9890.17962.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 618 bits (1594), Expect = 2.810e-212
Identity = 384/552 (69.57%), Postives = 388/552 (70.29%), Query Frame = 1
Query:    1 CGTFSTALCGDAGCYDPGTGDYDVTVPADQAVGEYKLEVVSANDTDVSSCTASSFFVVEAGGAPAVSPTETPVDETPAPSPPPLPTFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGVAVATMMTPXXVVVATAAPPAPTGAPVAPVATGAPLLPTPTPVVTPAAVVTTDAPIADATAAPVXXXXXXXXXSTSSSEXXXXXXXXXXGSPGFPPTPVPDKVVCDDAAELSFVYTLEDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            CGTFSTA     GCYDPGTGDYDVTVPADQAVGEYKLEVVSA+DTDVSSCTASSF VVEAGGAPAVSPTETPVDETPAP                                                                            XXXXXXXXXXXXXXXXXXXXXXXXXXX   S   VA                                                                           XXXXXXXXXXGSPGFPPTPVPDKVVCDD+AELSFVYTLEDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFI+CVSEVVVDADETCDGTAQNDMGECRMDIVDS VAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWT+NLMH
Sbjct:  189 CGTFSTAXXXXXGCYDPGTGDYDVTVPADQAVGEYKLEVVSADDTDVSSCTASSFLVVEAGGAPAVSPTETPVDETPAPX---------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSEPVAXXXX----------------------------------------------------------------------XXXXXXXXXXXGSPGFPPTPVPDKVVCDDSAELSFVYTLEDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFIACVSEVVVDADETCDGTAQNDMGECRMDIVDSTVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTDNLMH 595          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: MEP16 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 6.310e-96
Identity = 156/284 (54.93%), Postives = 200/284 (70.42%), Query Frame = 1
Query:  829 GSPGFPPTPVPDKVVCDDAAELSFVYTL---EDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVN--GTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCD-GTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMHGK 1662
            GSPG PP PVP K VCD AAELSF Y     E+ +  LVT+ HASGDR+E GC+TLT+++ WL + P  VPT +L  VD  T  A+    T    TG+WL+ TS+ ++NGVT  +KGTS+GGDCDELK  S+    + + GHGGN+DI  T+++SWD +    HIL D   G   RS+I+C SEVV + D TCD G A+ D GECRMD+VDS + + GY  +ESYGITWKVRG C+D+SN + +FD+V VYGD+ N DI+ MWYG YSYGH GGVWT++LMHG+
Sbjct:   95 GSPGVPPIPVPAKTVCDPAAELSFTYDAREDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACSSEVVNEND-TCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPE-VFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMHGE 376          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 5.190e-86
Identity = 147/277 (53.07%), Postives = 192/277 (69.31%), Query Frame = 1
Query:  835 PGFPPTPVPDKVVCDDAAELSFVYTLE-DTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSI-GGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDD-GTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            PG PPTPVP +V CD AA ++F Y LE  T  PL+T++H S DR E GC   + L++W+  + ADV   +L   D TT  A + T    TG+WLL TSV +TNGV FE+ GT   GGD D++  SS+   + RI G GG++    T V SW       H L D  + G   RS+I C+SE++ +  +TCDG A+ + GECRMD+++SI++Y GY+ TESYG++WKVRGLC DLSN+DTLFDSVRVYGD+++SDIYG+WYGHYSYGHLGG+WTNN MH
Sbjct:  215 PGTPPTPVPPRVTCDPAAVVAFSYKLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKAQDADVQE-LLYPADPTTGEA-DTTGGAATGVWLLRTSVDVTNGVMFEVMGTQAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPDDAEWGAEPRSYIGCLSEILEEG-QTCDGVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCTDLSNQDTLFDSVRVYGDLQDSDIYGLWYGHYSYGHLGGMWTNNFMH 488          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: MEP21 (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.030e-85
Identity = 152/277 (54.87%), Postives = 195/277 (70.40%), Query Frame = 1
Query:  835 PGFPPTPVPDKVVCDDAAELSFVYTLE-DTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSI-GGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDD-GTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            PG PPTPVP +V CD AA ++F Y LE  T  PL+T++H S DR E GC   + L++W+ T+ ADV   +L   D TT  A + T    TG+WLL TSV +TNGV FE+ GT   GGD D++  SS+   + RI G GG++    T V SW       H+L D  + G   RS+I C+SE++ +  +TCDG A+ + GECRMD+++SI++Y GY+ TESYG++WKVRGLCDDLSNKDTLF+SVRVYGD+KNSDIYG+WYGHYSYGHLGGVWTNN MH
Sbjct:  411 PGTPPTPVPLRVTCDPAAVVAFSYKLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKTQDADVQE-LLYPADPTTGEA-DTTGGAATGVWLLRTSVDVTNGVMFEVMGTEAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPDDAEWGAEPRSYIGCLSEILEEG-QTCDGVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCDDLSNKDTLFESVRVYGDIKNSDIYGLWYGHYSYGHLGGVWTNNFMH 684          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.790e-82
Identity = 139/261 (53.26%), Postives = 182/261 (69.73%), Query Frame = 1
Query:  892 LSFVYTL---EDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVN--GTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCD-GTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            LSF Y     E+ +  LVT+ HASGDR+E GC+TLT+++ WL + P  VPT +L  VD  T  A+    T    TG+WL+ TS+ ++NGVT  +KGTS+GGDCDELK  S+    + + GHGGN+DI  T+++SWD +    HIL D   G   RS+I+C SEVV + D TCD G A+ D GECRMD+VDS + + GY  +ESYGITWKVRG C+D+SN + +FD+V VYGD+ N DI+ MWYG YSYGH GGVWT++LMH
Sbjct:   51 LSFTYDAREDEEIEGALVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACTSEVVNEND-TCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPE-VFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMH 309          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 4.530e-57
Identity = 116/237 (48.95%), Postives = 144/237 (60.76%), Query Frame = 1
Query:  949 ASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKA-WNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            A GD    GC TL+ LY W          G +  +DS     V+ T  T TG WLL   + +T G T   +G  +GG+C EL+  ST  + +  I GHGGN+  + T+V SWD         K  +     RSFI CVSEV+   ++TC   A N+MGECRMDI+DS + Y GYD +E+YGITWKVRG C DLSN D +FD V VYGDMK SDI+ M+YG YS+GH GGVWTNNLMH
Sbjct:    4 AEGDGG--GCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDR--VDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGR-----KPQETYKDGRSFIRCVSEVLT-GEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPD-VFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMH 226          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: MEP1 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.880e-56
Identity = 115/243 (47.33%), Postives = 150/243 (61.73%), Query Frame = 1
Query:  958 DRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSST-KKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVR---------GLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            D    GC TLT LY++  TE      G L  +D +       T+ T    WLL+  + +TNG  F   G+  GGDCDEL+  ST    W  + GHGG++    TVV SWD   T +   +++ +G   RSF++CVSE +    ETCDG A+NDMGECRMDI++S + Y G+ ++ESYG+TWKVR         G C DLSN D +F++  VYGD+KNSDI+ M+YGHYSYGH GGVWTNN MH
Sbjct:   16 DAESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKK--WLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWD---TPNKQPQETYEG--GRSFLNCVSEKLTG--ETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPD-VFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMH 248          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.170e-55
Identity = 128/273 (46.89%), Postives = 161/273 (58.97%), Query Frame = 1
Query:  844 PPTPVPDKVVCDDAAELSFVYTLEDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGT--TATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            PPTPVP    CD  A      T++  K    T    SG     GC TLT LY+      A   TG L  +DS  +  V+G   +A PTG WLL +++ I +  T  ++G   GGDCD L+  ST   +  I GHGGN+  + T V SWD SK  +   K ++     RSFI C+++   D + +C G +  DMG CRMDI+DS +   GYD +ESYG+TWKVRGLC +LSN   LFD   VYGD+KNSDIYGM+YG YSYGH GGVWTNN MH
Sbjct:  222 PPTPVPSG--CDTKA------TVQIDKD---TAYFKSG-----GCATLTDLYN------AQDGTGPLWVLDSN-DNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSKYWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNE----GRSFIRCITQY--DDNYSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLK-LFDKRNVYGDIKNSDIYGMYYGMYSYGHEGGVWTNNKMH 464          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 8.250e-52
Identity = 115/259 (44.40%), Postives = 156/259 (60.23%), Query Frame = 1
Query:  913 EDTKRPLVTVAHASGDRSEA-----GCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVNGTTAT-PTGI---WLLDTSVVITNGVTFEIKGTSIGGDCDELKFSST-KKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTN-RSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            +D  RP    A +SG          GC T+T LY++  TE      G +  +D       +GT    P+GI   WLL   + IT G  F  KGTS GGDC++L+  ST    ++ + GHGG++  + T+V SWD         K+  +   N RSF++CVSE +   D  C+G A+N+MGECRMDI++S +AY GY ++ESYG+TWKVRG C DLSN + +F+   VYGD+  SDI+ ++YGHYSYGH GGVWTNN MH
Sbjct:  423 DDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDD------DGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPN------KEPQETYENGRSFLNCVSEKLTGDD--CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPE-VFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMH 666          
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.460e-51
Identity = 95/184 (51.63%), Postives = 123/184 (66.85%), Query Frame = 1
Query: 1108 WLLDTSVVITNGVTFEIKGTSIGGDCDELKFSST-KKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFISCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNLMH 1656
            WLL++ + +T+G  F   G+  GGDCDEL+  ST    W  + GHGG++    TVV SWD         K  +     RSF++CVSE +    ETCDG A+ND GECRMDI++S + Y G+ + ESYG+TWKVRG C DLSN D +F++  VYGD+KNS+I+ M+YG YSYGH GGVWTNN MH
Sbjct:   19 WLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNK-----KPQETYEGGRSFLNCVSEKLTG--ETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPD-VFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMH 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9890.17962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mannuronan2.810e-21269.57C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
MEP166.310e-9654.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mannuronan5.190e-8653.07C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
MEP211.030e-8554.87protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Mannuronan1.790e-8253.26C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Mannuronan4.530e-5748.95C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
MEP11.880e-5647.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mannuronan2.170e-5546.89C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
Mannuronan8.250e-5244.40C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
Mannuronan1.460e-5151.63C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9890contigEcto-sp9_F_contig9890:522..4643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.7
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMannuronan C-5-epimerase
Ec32 orthologEc-08_004820.1
Exons7
Model size1677
Cds size1677
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.013535-CDS-Ecto-sp9_F_contig9890:521..13761622931082.013535-CDS-Ecto-sp9_F_contig9890:521..1376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 522..1376 +
1692279024.4309766-CDS-Ecto-sp9_F_contig9890:521..13761692279024.4309766-CDS-Ecto-sp9_F_contig9890:521..1376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 522..1376 +
1622931082.0307508-CDS-Ecto-sp9_F_contig9890:1772..19521622931082.0307508-CDS-Ecto-sp9_F_contig9890:1772..1952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 1773..1952 +
1692279024.4434996-CDS-Ecto-sp9_F_contig9890:1772..19521692279024.4434996-CDS-Ecto-sp9_F_contig9890:1772..1952Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 1773..1952 +
1622931082.0473309-CDS-Ecto-sp9_F_contig9890:2510..26661622931082.0473309-CDS-Ecto-sp9_F_contig9890:2510..2666Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 2511..2666 +
1692279024.4538321-CDS-Ecto-sp9_F_contig9890:2510..26661692279024.4538321-CDS-Ecto-sp9_F_contig9890:2510..2666Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 2511..2666 +
1622931082.060181-CDS-Ecto-sp9_F_contig9890:3124..32021622931082.060181-CDS-Ecto-sp9_F_contig9890:3124..3202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3125..3202 +
1692279024.4668388-CDS-Ecto-sp9_F_contig9890:3124..32021692279024.4668388-CDS-Ecto-sp9_F_contig9890:3124..3202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3125..3202 +
1622931082.0878122-CDS-Ecto-sp9_F_contig9890:3493..35891622931082.0878122-CDS-Ecto-sp9_F_contig9890:3493..3589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3494..3589 +
1692279024.4797194-CDS-Ecto-sp9_F_contig9890:3493..35891692279024.4797194-CDS-Ecto-sp9_F_contig9890:3493..3589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3494..3589 +
1622931082.1043074-CDS-Ecto-sp9_F_contig9890:3916..40511622931082.1043074-CDS-Ecto-sp9_F_contig9890:3916..4051Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3917..4051 +
1692279024.4908319-CDS-Ecto-sp9_F_contig9890:3916..40511692279024.4908319-CDS-Ecto-sp9_F_contig9890:3916..4051Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 3917..4051 +
1622931082.116481-CDS-Ecto-sp9_F_contig9890:4466..46431622931082.116481-CDS-Ecto-sp9_F_contig9890:4466..4643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 4467..4643 +
1692279024.5064375-CDS-Ecto-sp9_F_contig9890:4466..46431692279024.5064375-CDS-Ecto-sp9_F_contig9890:4466..4643Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9890 4467..4643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9890.17962.1prot_Ecto-sp9_F_contig9890.17962.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9890 522..4643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9890.17962.1

>prot_Ecto-sp9_F_contig9890.17962.1 ID=prot_Ecto-sp9_F_contig9890.17962.1|Name=mRNA_Ecto-sp9_F_contig9890.17962.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=559bp
CGTFSTALCGDAGCYDPGTGDYDVTVPADQAVGEYKLEVVSANDTDVSSC
TASSFFVVEAGGAPAVSPTETPVDETPAPSPPPLPTFAPVAPTPAPVTGA
PTSSPPAAPSVVAASAAPSPPPVVFTTLSPSVAATVAETATPPTASPSVA
ATVAEPATPPTASPSVAATVAEPATPPTASPSMAPSGVAVATMMTPAPVV
VATAAPPAPTGAPVAPVATGAPLLPTPTPVVTPAAVVTTDAPIADATAAP
VAAPVAAPVASTSSSEPVASSSSSEPGSPGFPPTPVPDKVVCDDAAELSF
VYTLEDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLT
VDSTTETAVNGTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKF
SSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFI
SCVSEVVVDADETCDGTAQNDMGECRMDIVDSIVAYFGYDETESYGITWK
VRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTNNL
MHGKGSSC*
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mRNA from alignment at Ecto-sp9_F_contig9890:522..4643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9890.17962.1 ID=mRNA_Ecto-sp9_F_contig9890.17962.1|Name=mRNA_Ecto-sp9_F_contig9890.17962.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4122bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9890:522..4643+ (Ectocarpus species9 EcSCA_722f female)
TGCGGGACCTTCTCGACGGCCCTCTGCGGCGACGCCGGCTGCTACGACCC CGGCACCGGCGACTACGACGTGACCGTCCCGGCCGACCAGGCCGTCGGCG AGTACAAGCTCGAGGTCGTCAGCGCCAACGACACGGACGTCTCGAGCTGC ACGGCCTCGAGCTTCTTCGTGGTGGAGGCGGGGGGCGCGCCCGCGGTAAG CCCGACAGAGACCCCCGTCGACGAGACGCCGGCCCCGTCGCCGCCGCCGC TCCCGACCTTCGCGCCGGTGGCGCCCACGCCGGCTCCGGTGACAGGTGCG CCGACCTCTTCCCCCCCCGCCGCCCCCTCCGTTGTTGCCGCCTCGGCGGC CCCCTCCCCCCCCCCCGTGGTTTTTACCACGCTCTCGCCCTCAGTTGCAG CGACGGTAGCAGAAACGGCCACCCCCCCCACGGCCTCGCCCTCAGTTGCA GCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTCAGTGGC AGCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTCAATGG CTCCTTCGGGCGTAGCAGTAGCGACGATGATGACGCCCGCCCCCGTTGTT GTTGCCACCGCCGCCCCGCCCGCCCCCACGGGCGCCCCCGTGGCTCCGGT AGCAACCGGTGCGCCCCTCCTCCCCACACCCACCCCCGTAGTAACACCTG CAGCCGTCGTTACCACCGATGCTCCGATTGCTGACGCCACAGCTGCGCCG GTGGCCGCGCCGGTGGCCGCGCCTGTGGCGTCGACCTCTAGCAGCGAGCC GGTGGCTTCTAGCTCCAGCAGCGAGCCCGGGAGCCCAGGATTCCCGCCCA CGCCGGTAAGATCTGTGGCTGCATGTGGTGTAGATGTCTCGCGTGGTGCA TTGTGTGCTGTGTACGAGACGTATCCGCCAAATGCTGTTTTCGAAAGTAT ACGTCAGTAAAGAGACTCTTGAAATTCGATACTTGGCCTGCTGTTTTCAG TTGCCACCGCCGTGGAGTACCAGTTATTGCATGCAATGAGTTAAGGGTCC TCCTAGGCCGACCTGTGTTTTTACGTGTTTATCCCTTGTAAGTTTTCTTA ATTTCTCGTGAACATGAGAACGTTTCATCAAAAAAAAAAATTGTGTACAA GTTTTTCAAATAGAGAATTTTTGCTTTTAGCCATGGGGGAGCCGTGGGGG CGGACGAGAACTGACTGCTGTTTTTTCTACCATCTATCTATTGCGACGCA GGTGCCCGACAAGGTGGTTTGCGACGACGCGGCCGAGCTCAGCTTCGTCT ACACCCTCGAGGACACGAAGAGGCCCCTCGTTACGGTGGCCCACGCCAGC GGAGACCGATCCGAGGCCGGGTGCCTCACCCTCACCAAGCTCTACGACTG GCTGGCCACGGAGCCCGCGGATGTCCCCACGGTGCGCGTGTGTGTCTGTG TATTTTTTATTGTTAGCATCAACCGCGCTAACCGTCTGAGCAATGAAGAG ACATCAGTCTCAGTGCGGTTCAAAACACAAAAACACTGGTAAATGCCATT AATTGGGACCCCGTGAGGAGGCGGCATGGGGGAGGCCAATCTATTCTCCG GATCAAAGACATAAACGGTACAAGTAGCGACAGAAGAGAACTGCACGTGT CGATGAAGGCTGCTACCTTGCACTCTAGTTCGTTTTAGAATGCTTTCCGT GTGTGTATGTGTGTCTTACAGCGGCGGTACATAGTGTGTGGTGGTGGTAT GCAGATGTCTCTTTTTGCGGTTTTTATATATTTAAGTCGTATGTGTGTTG TATGTTCTGGTGGTAAAAAAAGCCGATATTTATTAGCCTTTGCATTTTTT TGTGCTGTGGTATGTACATAAGATGCTTGTTTTTTCGGTTCCACCCCGAT CCCTACCCGCCTCACCCAATCCCCCCGCGCCCGTCCCCTCTTTTTCTCTC ATATACACAATTCCCGCCGCCGTTCAACTGTGTTTGTAGGGCATGCTTCT GACGGTGGACTCGACGACGGAAACCGCGGTCAACGGCACTACGGCGACGC CCACGGGTATCTGGCTGCTGGACACGTCGGTGGTGATCACGAACGGCGTC ACCTTCGAGATCAAGGGCACCAGCATCGGCGGCGACTGCGATGAGGTAGG TTTGAGATTGATATGGGTGTCTTATTTATGTGGCCCTTTTGCCTTAGGAT GTCTGTATTGCATCCTGGACGTGTCTTATCTCACACCCGAGTTACGAGTT TTGATGGTACGTCCGCAAGGGTGATCGTTCGGTCGGGTGGCAGCTTGTGC GTAGCCAAGACTTGCCTGCTTCCCATCAGCGTATCGGGCGGTTCGTCTCC TGTGTCAGGCATGCACGCAAACGATTTTATGTTTCAAGTTCACCTCGATA TTAATTAGTAAATATATGTGGTCAGGTTTTGCTTGTACAAATACATGTAG GATGAAAACACGCACACACACACACACACATTGCCGGCGTGTTTCAGTAG CGCCGCACCACCGCATCGCGGATGCGTTGCTCTCGCCTTGGCGCTTATGC CCCCCCCCTCCCCCCCCCCACTGTTTTTTGCGATATGTCTGTGTACGATA CAGCTCAAGTTCAGCAGCACAAAGAAGGCGTGGAACCGAATCATGGGTCA CGGCGGCAACATCGACATCGACTCGACAGTGGTAAGGATAGGATAGGATA GCAGTCTTAGCGTCGTCGTCTTCCGGTACCATTGCCATCAGTCAGTACCG TTGGCGTTGTACCACTTTCGTGCGGTACGTTGTTTTTGGGTTTTTGGGTT TTGACAGGTCAAGCAAGCCCCAGCAGTCCGAAAGTATAAATAATAGTGTC GATGGAACGCTTTGGGAGCGAAGTTTCTTTGTGGACCGGACACACTCAAC ACGATCCTATGCATGTGATCTGATGTTGGTGATTCTCACGAGATTTCGAT TGTTGTTTTTGTCTCGTATCAGGTGAGGAGCTGGGACGCCTCCAAGACTC TGGACCACATCCTCAAGGATAGTGATGACGGCACGACCAACCGATCCTTC ATCTCGTGCGTGAGCGAGGTAAGCAACAGGACTGTTTTTTGTTGTCCTTG TTTCGCGCTTCCAAGGAAAAATACGATACAGTAACATGAACACCCGTCGC CGCCCTCTCGCGACACAGATACGGGGCGGGGGGCTCATGGCATGGGCGTT CTTCTTGTTTTTTGTCCCACGGTCTCCGTTTGACGTGATTCCTTTTTGCT CTTTGCGGGTGTTCTCGCCAAGGGTACGAAACGCGGGGTCTGAGTATGTC CGTAATTTTCTACCTTCTGTCTTGCATCTCTTCGGCACTCTCATCCTTCT CTCTTCTCTCTTTTGTTCCTCCGTGCACTCCCTCTTCTTTGGCAGGTGGT GGTTGACGCGGACGAGACCTGCGACGGCACGGCGCAGAACGACATGGGGG AGTGCCGGATGGACATCGTCGACAGCATTGTGGCCTACTTCGGCTACGAC GAGACCGAGAGCTACGGGATCACGTGGAAGGTGACGCCGCACGTACCTAG GTAGTTGTTTGTACCATCCCTTGAGACCCCGCCAGTAGTCTCTCGAGGAT ATTTATCTTGGTTTTAGTAGAGGGTACGGGTAGTGATTCGAAACCTCCCG CTCTCTTCATGGATTTTTTTATATCTCTTGCGAAGACAGGTACGACTAAG CCAGAAGGGGGGTGGGTGGGCGGGTATGGGACACATGTATCCCCGTCGGT GTCTTGCGTTGTGCGTCGCCACCGGGTGATTGATGGCCGCATCGATATGT CGCAAGCGACGAGAATCAAATGTTCCATGGGTGGCGACAACACAGCTATA ATAGTGTAATTTTTTTGCTCAACGAACGGCGGCCGCAAGAGTGTTCGTGA CAAAAGTCATGCATGCGCATCTGTTTTTTTTGTTTTTGTTGGCAGGTGCG CGGCCTGTGCGACGATCTGAGCAACAAGGACACGCTGTTCGACTCGGTCC GTGTCTACGGCGACATGAAGAACTCCGACATCTACGGCATGTGGTACGGG CACTACAGCTACGGCCACCTCGGCGGAGTGTGGACGAACAACCTCATGCA CGGTAAGGGGAGTTCGTGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9890:522..4643+

>mRNA_Ecto-sp9_F_contig9890.17962.1 ID=mRNA_Ecto-sp9_F_contig9890.17962.1|Name=mRNA_Ecto-sp9_F_contig9890.17962.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3354bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9890:522..4643+ (Ectocarpus species9 EcSCA_722f female)
TGCGGGACCTTCTCGACGGCCCTCTGCGGCGACGCCGGCTGCTACGACCC
CGGCACCGGCGACTACGACGTGACCGTCCCGGCCGACCAGGCCGTCGGCG
AGTACAAGCTCGAGGTCGTCAGCGCCAACGACACGGACGTCTCGAGCTGC
ACGGCCTCGAGCTTCTTCGTGGTGGAGGCGGGGGGCGCGCCCGCGGTAAG
CCCGACAGAGACCCCCGTCGACGAGACGCCGGCCCCGTCGCCGCCGCCGC
TCCCGACCTTCGCGCCGGTGGCGCCCACGCCGGCTCCGGTGACAGGTGCG
CCGACCTCTTCCCCCCCCGCCGCCCCCTCCGTTGTTGCCGCCTCGGCGGC
CCCCTCCCCCCCCCCCGTGGTTTTTACCACGCTCTCGCCCTCAGTTGCAG
CGACGGTAGCAGAAACGGCCACCCCCCCCACGGCCTCGCCCTCAGTTGCA
GCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTCAGTGGC
AGCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTCAATGG
CTCCTTCGGGCGTAGCAGTAGCGACGATGATGACGCCCGCCCCCGTTGTT
GTTGCCACCGCCGCCCCGCCCGCCCCCACGGGCGCCCCCGTGGCTCCGGT
AGCAACCGGTGCGCCCCTCCTCCCCACACCCACCCCCGTAGTAACACCTG
CAGCCGTCGTTACCACCGATGCTCCGATTGCTGACGCCACAGCTGCGCCG
GTGGCCGCGCCGGTGGCCGCGCCTGTGGCGTCGACCTCTAGCAGCGAGCC
GGTGGCTTCTAGCTCCAGCAGCGAGCCCGGGAGCCCAGGATTCCCGCCCA
CGCCGTGCGGGACCTTCTCGACGGCCCTCTGCGGCGACGCCGGCTGCTAC
GACCCCGGCACCGGCGACTACGACGTGACCGTCCCGGCCGACCAGGCCGT
CGGCGAGTACAAGCTCGAGGTCGTCAGCGCCAACGACACGGACGTCTCGA
GCTGCACGGCCTCGAGCTTCTTCGTGGTGGAGGCGGGGGGCGCGCCCGCG
GTAAGCCCGACAGAGACCCCCGTCGACGAGACGCCGGCCCCGTCGCCGCC
GCCGCTCCCGACCTTCGCGCCGGTGGCGCCCACGCCGGCTCCGGTGACAG
GTGCGCCGACCTCTTCCCCCCCCGCCGCCCCCTCCGTTGTTGCCGCCTCG
GCGGCCCCCTCCCCCCCCCCCGTGGTTTTTACCACGCTCTCGCCCTCAGT
TGCAGCGACGGTAGCAGAAACGGCCACCCCCCCCACGGCCTCGCCCTCAG
TTGCAGCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTCA
GTGGCAGCGACGGTAGCAGAACCGGCCACCCCCCCCACGGCCTCGCCCTC
AATGGCTCCTTCGGGCGTAGCAGTAGCGACGATGATGACGCCCGCCCCCG
TTGTTGTTGCCACCGCCGCCCCGCCCGCCCCCACGGGCGCCCCCGTGGCT
CCGGTAGCAACCGGTGCGCCCCTCCTCCCCACACCCACCCCCGTAGTAAC
ACCTGCAGCCGTCGTTACCACCGATGCTCCGATTGCTGACGCCACAGCTG
CGCCGGTGGCCGCGCCGGTGGCCGCGCCTGTGGCGTCGACCTCTAGCAGC
GAGCCGGTGGCTTCTAGCTCCAGCAGCGAGCCCGGGAGCCCAGGATTCCC
GCCCACGCCGGTGCCCGACAAGGTGGTTTGCGACGACGCGGCCGAGCTCA
GCTTCGTCTACACCCTCGAGGACACGAAGAGGCCCCTCGTTACGGTGGCC
CACGCCAGCGGAGACCGATCCGAGGCCGGGTGCCTCACCCTCACCAAGCT
CTACGACTGGCTGGCCACGGAGCCCGCGGATGTCCCCACGGTGCCCGACA
AGGTGGTTTGCGACGACGCGGCCGAGCTCAGCTTCGTCTACACCCTCGAG
GACACGAAGAGGCCCCTCGTTACGGTGGCCCACGCCAGCGGAGACCGATC
CGAGGCCGGGTGCCTCACCCTCACCAAGCTCTACGACTGGCTGGCCACGG
AGCCCGCGGATGTCCCCACGGGCATGCTTCTGACGGTGGACTCGACGACG
GAAACCGCGGTCAACGGCACTACGGCGACGCCCACGGGTATCTGGCTGCT
GGACACGTCGGTGGTGATCACGAACGGCGTCACCTTCGAGATCAAGGGCA
CCAGCATCGGCGGCGACTGCGATGAGGGCATGCTTCTGACGGTGGACTCG
ACGACGGAAACCGCGGTCAACGGCACTACGGCGACGCCCACGGGTATCTG
GCTGCTGGACACGTCGGTGGTGATCACGAACGGCGTCACCTTCGAGATCA
AGGGCACCAGCATCGGCGGCGACTGCGATGAGCTCAAGTTCAGCAGCACA
AAGAAGGCGTGGAACCGAATCATGGGTCACGGCGGCAACATCGACATCGA
CTCGACAGTGCTCAAGTTCAGCAGCACAAAGAAGGCGTGGAACCGAATCA
TGGGTCACGGCGGCAACATCGACATCGACTCGACAGTGGTGAGGAGCTGG
GACGCCTCCAAGACTCTGGACCACATCCTCAAGGATAGTGATGACGGCAC
GACCAACCGATCCTTCATCTCGTGCGTGAGCGAGGTGAGGAGCTGGGACG
CCTCCAAGACTCTGGACCACATCCTCAAGGATAGTGATGACGGCACGACC
AACCGATCCTTCATCTCGTGCGTGAGCGAGGTGGTGGTTGACGCGGACGA
GACCTGCGACGGCACGGCGCAGAACGACATGGGGGAGTGCCGGATGGACA
TCGTCGACAGCATTGTGGCCTACTTCGGCTACGACGAGACCGAGAGCTAC
GGGATCACGTGGAAGGTGGTGGTTGACGCGGACGAGACCTGCGACGGCAC
GGCGCAGAACGACATGGGGGAGTGCCGGATGGACATCGTCGACAGCATTG
TGGCCTACTTCGGCTACGACGAGACCGAGAGCTACGGGATCACGTGGAAG
GTGCGCGGCCTGTGCGACGATCTGAGCAACAAGGACACGCTGTTCGACTC
GGTCCGTGTCTACGGCGACATGAAGAACTCCGACATCTACGGCATGTGGT
ACGGGCACTACAGCTACGGCCACCTCGGCGGAGTGTGGACGAACAACCTC
ATGCACGGTAAGGGGAGTTCGTGTTAAGTGCGCGGCCTGTGCGACGATCT
GAGCAACAAGGACACGCTGTTCGACTCGGTCCGTGTCTACGGCGACATGA
AGAACTCCGACATCTACGGCATGTGGTACGGGCACTACAGCTACGGCCAC
CTCGGCGGAGTGTGGACGAACAACCTCATGCACGGTAAGGGGAGTTCGTG
TTAA
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