mRNA_Ecto-sp9_F_contig1014.179.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1014.179.1
Unique NamemRNA_Ecto-sp9_F_contig1014.179.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1014.179.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP0_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.560e-49
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:    1 MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFPDLGNTSTWETPRISQREG 237
            MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFPDLGNT+ WETPR+ QREG
Sbjct:    1 MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFPDLGNTNKWETPRVPQREG 79
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1014.179.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH43_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.660e-24
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   64 LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFPDLGNTSTWETPR 219
            LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEP+TPCSSF DLGN +TWETPR
Sbjct:   12 LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPATPCSSFQDLGNMNTWETPR 63
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1014.179.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.460e-15
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 MVVIVETGDGGWDTQE--EPRDMLVGRVFGGLPNGRLGRHSVKAARSP------VDPGTEPSTPCSSFPDLGNTSTW 207
            MV++ ++GD  WDT+   +PRDML GRVFGGLPNGRLGR S+KA  S       VDP TEPSTP SS  DL + +T+
Sbjct:    1 MVIVEDSGD--WDTERKTDPRDMLFGRVFGGLPNGRLGRRSIKAGGSAGNSVLRVDPVTEPSTPSSSSADLTSFNTF 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1014.179.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.560e-4994.94protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.660e-2492.31protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.460e-1557.14protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1014contigEcto-sp9_F_contig1014:25388..27035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002470.1
Exons2
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928209.0818064-CDS-Ecto-sp9_F_contig1014:25387..254491622928209.0818064-CDS-Ecto-sp9_F_contig1014:25387..25449Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1014 25388..25449 +
1692277795.6238713-CDS-Ecto-sp9_F_contig1014:25387..254491692277795.6238713-CDS-Ecto-sp9_F_contig1014:25387..25449Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1014 25388..25449 +
1622928209.0971024-CDS-Ecto-sp9_F_contig1014:26860..270351622928209.0971024-CDS-Ecto-sp9_F_contig1014:26860..27035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1014 26861..27035 +
1692277795.632053-CDS-Ecto-sp9_F_contig1014:26860..270351692277795.632053-CDS-Ecto-sp9_F_contig1014:26860..27035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1014 26861..27035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1014.179.1prot_Ecto-sp9_F_contig1014.179.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1014 25388..27035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1014.179.1

>prot_Ecto-sp9_F_contig1014.179.1 ID=prot_Ecto-sp9_F_contig1014.179.1|Name=mRNA_Ecto-sp9_F_contig1014.179.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPG
TEPSTPCSSFPDLGNTSTWETPRISQREG
back to top

mRNA from alignment at Ecto-sp9_F_contig1014:25388..27035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1014.179.1 ID=mRNA_Ecto-sp9_F_contig1014.179.1|Name=mRNA_Ecto-sp9_F_contig1014.179.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1014:25388..27035+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGTCATCGTCGAAACTGGCGACGGAGGGTGGGATACCCAGGAGGA
GCCGAGGGACATGTGAGTGTTGATATACTCTCTCTTGCCGCAGGCTTCGC
TTTTAGTTTTGGTAGAGGGAAATATTGATAAGGCGCTAGGATGCTCGTAC
TGGTTCACTTCGCTTACGTCGCTGTTCTTCCCGCCGACGTGTAGGTATTG
TCTACATAGATAGCCGCTGTGCGTGTTCCACGCCTGCCTCTCCTTCAGAT
AGATGTAGGATCAGATGCCCAGTAGGACACGATGTTCGTGAGATTCATCT
TCGTGCCAAATACCGGGCGCAACAAAAAAGCCTCTTCTACCTGATAAGAT
GCCCTCGACAATCCAAGTAGAGCAGACCGTGGCGCAGGGTTGTGTACCAT
ACACACACACAATTGACCCTACTGTCTAGAGGTAGCCGCGGGGGCGTGGG
GGCGATATGTACCATTTGGCGTGATCCGTATAGCCCTGGGCTTTGCATCT
CGTAAATCTAGAAAGAGATGTGAGATATATATATGTGCCGAAATATGTCC
ATGTGTCGAATATTTACTGTCTCATGTGTTGCACATATTTCCGACTGGAG
GGTCTGTGATGTTGTATTATACAACACGTGACAGACTGCAGGAATACATG
ACAGAGTCTCCTGGATCCGTTACATGCCACCAAATAAATGTGGATGGACA
TACATAGGCTCGAATACAACAAACAAGCGCCCCAACCCGCACTCTTCTTG
GTAAACACGCCTAAAAAACAACGATGCATGACCGCGGGCACACGTCAAAA
GCAGACAAGCCCCGGGCCAACACCAACTCGGGCAAAGTCATGCAGATCAT
GTTGTTTCTCGCGCCCCGGGATAAACGCTACGCCATTTTGCACATTCTTG
GGCTAAAACCTAGAGGCGTGGACTACGGGGAGGGGAAAAAATGGCGTACG
TAGACAGGCCACACATACAGAGGTCGCATGGAAAAAAAGGGTTGCTGGGG
GGAGAACTGCTTCATAGTGTAGAGTTGGAAACTTTGCTGTGAAGCTTCAG
TGGCACCGGTCGTTCTGTAACAATTGAGGAGTGCGATGGTATTCTCAAAG
ATGAGAAGCACTGCTTGCCTTGGATGGATATTCCGATTGCTGACATAACA
GGTTTTCCCGCCCATTCCCCCGCTTCGATCGAACGCCGTCCTAGCCAGCC
GTTGGGAAGGCCTTCAAGCGCACTGAACCCCCCCAACTCATGACAGGCTT
GTGGGCCGTGTGTTCGGAGGCCTACCCAACGGCCGACCAAGCCATCGCTC
AATTATAGGGGGGGTTTTGGCGGGAAAACCTGTTCTATGCTAAGGACGGG
TTTCGTAACAATCGAGGAATGCGATGATATTTCTTCCACAGTAGAAGTGC
TGCTTGCCTTGGATGGATATCTTGATTGCTGACACCGATGTTGCGACCCT
CCCCCTCCCACCAACTTCAACAGGCTTGTGGGAAGGGTTTTTGGGGGCCT
CCCGAACGGCCGGCTTGGACGGCATTCGGTGAAGGCGGCGAGATCGCCGG
TTGACCCCGGAACGGAACCATCGACTCCATGTTCTTCTTTCCCGGACCTC
GGGAACACGAGCACGTGGGAGACTCCTCGTATATCCCAGAGAGAAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1014:25388..27035+

>mRNA_Ecto-sp9_F_contig1014.179.1 ID=mRNA_Ecto-sp9_F_contig1014.179.1|Name=mRNA_Ecto-sp9_F_contig1014.179.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1014:25388..27035+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGTCATCGTCGAAACTGGCGACGGAGGGTGGGATACCCAGGAGGA
GCCGAGGGACATATGGTGGTCATCGTCGAAACTGGCGACGGAGGGTGGGA
TACCCAGGAGGAGCCGAGGGACATGCTTGTGGGAAGGGTTTTTGGGGGCC
TCCCGAACGGCCGGCTTGGACGGCATTCGGTGAAGGCGGCGAGATCGCCG
GTTGACCCCGGAACGGAACCATCGACTCCATGTTCTTCTTTCCCGGACCT
CGGGAACACGAGCACGTGGGAGACTCCTCGTATATCCCAGAGAGAAGGTG
CTTGTGGGAAGGGTTTTTGGGGGCCTCCCGAACGGCCGGCTTGGACGGCA
TTCGGTGAAGGCGGCGAGATCGCCGGTTGACCCCGGAACGGAACCATCGA
CTCCATGTTCTTCTTTCCCGGACCTCGGGAACACGAGCACGTGGGAGACT
CCTCGTATATCCCAGAGAGAAGGT
back to top