mRNA_Ecto-sp9_F_contig9784.17873.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9784.17873.1
Unique NamemRNA_Ecto-sp9_F_contig9784.17873.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.790e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLE 123
            QG YAEA+P YER+QA+R+KVLGPDHPDVA  LN+RAGLL+
Sbjct:  205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.260e-10
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            QGKYAEAEP YER+QA++E VLGP+HPDV  +LN+RA LLE+Q
Sbjct:  660 QGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.840e-10
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLER 126
            QGKYAEAEP YER+ A++EKVLGP+HPDVA +L++RA LLER
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLER 734
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.870e-10
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            QGKY EAEP YER+QA++EKVLG +HPDVA++LN+R  LL  Q
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.070e-10
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            QGKY +AEP  ER+Q +REKVLGP+HPDVA +LN+RAGLLE Q
Sbjct:  498 QGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.710e-10
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLE 123
            QGK+AEAEP YER+QA+REKVLGP HPDVA  LN+RA LL+
Sbjct:  366 QGKHAEAEPLYERSQAIREKVLGPKHPDVAEVLNNRATLLK 406
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Integrase (catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.490e-9
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            QGKY EAEP YER+QA+REKVLG +HP VA +LNDRA LL +Q
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGL 117
            QGKY EAEP Y+RA  +RE VLGPDHP VA TLN+ AGL
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.270e-9
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            QGKYAEAE  YER++A+R+K L PDHPDVA +LNDRA LL+++
Sbjct:  206 QGKYAEAEQLYERSEAIRDKTLDPDHPDVARSLNDRALLLDKK 248
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.990e-9
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 GKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQ 129
            GKY +AEP YER QA+ EK LGP+HP VA TLN+RAGLLE Q
Sbjct:  941 GKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9784.17873.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.790e-1175.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC1.260e-1072.09domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NB-ARC1.840e-1073.81and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
Uncharacterized1.870e-1067.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.070e-1072.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.710e-1075.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase1.490e-972.09catalytic domain-containing protein (Fragment) n=1... [more]
tetratricopeptide1.980e-971.79repeat protein n=1 Tax=Desulfobacter hydrogenophil... [more]
Tetratricopeptide2.270e-967.44repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized3.990e-971.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9784contigEcto-sp9_F_contig9784:2599..3715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D7G722
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size450
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9784.17873.1prot_Ecto-sp9_F_contig9784.17873.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9784 2644..3715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.7860248-UTR-Ecto-sp9_F_contig9784:2598..26431622931069.7860248-UTR-Ecto-sp9_F_contig9784:2598..2643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9784 2599..2643 -
1692279018.606474-UTR-Ecto-sp9_F_contig9784:2598..26431692279018.606474-UTR-Ecto-sp9_F_contig9784:2598..2643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9784 2599..2643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.8008049-CDS-Ecto-sp9_F_contig9784:2643..27931622931069.8008049-CDS-Ecto-sp9_F_contig9784:2643..2793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 2644..2793 -
1692279018.6198192-CDS-Ecto-sp9_F_contig9784:2643..27931692279018.6198192-CDS-Ecto-sp9_F_contig9784:2643..2793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 2644..2793 -
1622931069.8120313-CDS-Ecto-sp9_F_contig9784:3197..33231622931069.8120313-CDS-Ecto-sp9_F_contig9784:3197..3323Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 3198..3323 -
1692279018.6313684-CDS-Ecto-sp9_F_contig9784:3197..33231692279018.6313684-CDS-Ecto-sp9_F_contig9784:3197..3323Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 3198..3323 -
1622931069.8243203-CDS-Ecto-sp9_F_contig9784:3586..37151622931069.8243203-CDS-Ecto-sp9_F_contig9784:3586..3715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 3587..3715 -
1692279018.6442773-CDS-Ecto-sp9_F_contig9784:3586..37151692279018.6442773-CDS-Ecto-sp9_F_contig9784:3586..3715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9784 3587..3715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9784.17873.1

>prot_Ecto-sp9_F_contig9784.17873.1 ID=prot_Ecto-sp9_F_contig9784.17873.1|Name=mRNA_Ecto-sp9_F_contig9784.17873.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
QGKYAEAEPFYERAQALREKVLGPDHPDVAATLNDRAGLLERQGKCEEAE
PLYKRSLAIDEKVYGLDHPEVATDLNNWAGLLETQEKYTGAIPLLERALS
ILTKRLGFNHPDTVSTQNSLEAVRKMVWAQLDSR*
back to top

mRNA from alignment at Ecto-sp9_F_contig9784:2599..3715-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9784.17873.1 ID=mRNA_Ecto-sp9_F_contig9784.17873.1|Name=mRNA_Ecto-sp9_F_contig9784.17873.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1117bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9784:2599..3715- (Ectocarpus species9 EcSCA_722f female)
CAGGGCAAGTACGCTGAGGCCGAGCCATTCTATGAGCGGGCACAAGCCTT
ACGAGAGAAGGTGCTAGGTCCGGATCATCCTGATGTAGCGGCAACGCTCA
ACGACCGGGCAGGGTTGTTGGAGAGGCAGGTGAGAACCAACAATGTTTCT
AGATGCTTATAAGATATTGTAATCCTCAGCAGTTCTAAATCCCAATGTGA
CTGGATTCCGACTCTTTGCCACAACATGTTGCGGCATGTGTGCCTAGACA
GGGCCACTCTATGAACGGTCAGAAGCCACACAAGGGTAGGTTCTGGGCCT
GGAGCACCCGGACGCCGACCAGGCGCTTGTTCTCTCGCACATGCAGCGTT
ACCAAACGAACATACTTCTCTCCCTTTCCGGTTGCATTCCAGGGCAAGTG
TGAGGAGGCTGAGCCTCTGTACAAGCGATCGCTGGCTATCGACGAGAAAG
TTTACGGTCTTGACCACCCGGAAGTCGCTACGGACCTCAACAACTGGGCG
GGGTTGTTGGAGACACAGGTGAGACCCGCCAGAAATTGCGGGAATTTGTT
TTGTGGTGTACAACAGTGGACGGTGTGGTACTCAACATCCGGTCATTGTT
GGACAAGCAGGTAGGAGAACGCAGGGAGGAGAACTAGCTGTTTCGGCGTG
AATTGCTGTTTTATTAGTCAGCGGGCTTAGTGAGAGTGAGGGTGACGTGC
AGCAGCTGCCATTATGTCCGACCACACAATCATGAGGCCTTGTTCGTGTT
GAATTCCTCACGCATGTGTCGACTTTTTTCTTTTTCACGCTGGTTCGACC
AACTCTAGTCGACTGCTGGTGTGTACTACATTGTTGTGTCTGGTGGATCC
AAGGTCTAAGTGACTTGTGCGGTGTGCCCACTGGAATGTGATTTGGTTCC
CTACAATCTCAATCGATTGCAGGAGAAGTACACGGGGGCTATTCCACTTT
TGGAGAGGGCCCTCTCAATCTTGACGAAGAGGCTCGGGTTCAACCACCCA
GACACGGTCAGCACTCAGAACAGCCTGGAAGCTGTGCGAAAAATGGTTTG
GGCACAACTGGATAGTCGTTAGGCATACTGCGTACGCATGCCGCGGAGGC
CTGCACTACTACGGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9784:2599..3715-

>mRNA_Ecto-sp9_F_contig9784.17873.1 ID=mRNA_Ecto-sp9_F_contig9784.17873.1|Name=mRNA_Ecto-sp9_F_contig9784.17873.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9784:2599..3715- (Ectocarpus species9 EcSCA_722f female)
CAGGGCAAGTACGCTGAGGCCGAGCCATTCTATGAGCGGGCACAAGCCTT
ACGAGAGAAGGTGCTAGGTCCGGATCATCCTGATGTAGCGGCAACGCTCA
ACGACCGGGCAGGGTTGTTGGAGAGGCAGCAGGGCAAGTACGCTGAGGCC
GAGCCATTCTATGAGCGGGCACAAGCCTTACGAGAGAAGGTGCTAGGTCC
GGATCATCCTGATGTAGCGGCAACGCTCAACGACCGGGCAGGGTTGTTGG
AGAGGCAGGGCAAGTGTGAGGAGGCTGAGCCTCTGTACAAGCGATCGCTG
GCTATCGACGAGAAAGTTTACGGTCTTGACCACCCGGAAGTCGCTACGGA
CCTCAACAACTGGGCGGGGTTGTTGGAGACACAGGGCAAGTGTGAGGAGG
CTGAGCCTCTGTACAAGCGATCGCTGGCTATCGACGAGAAAGTTTACGGT
CTTGACCACCCGGAAGTCGCTACGGACCTCAACAACTGGGCGGGGTTGTT
GGAGACACAGGAGAAGTACACGGGGGCTATTCCACTTTTGGAGAGGGCCC
TCTCAATCTTGACGAAGAGGCTCGGGTTCAACCACCCAGACACGGTCAGC
ACTCAGAACAGCCTGGAAGCTGTGCGAAAAATGGTTTGGGCACAACTGGA
TAGTCGTTAGGAGAAGTACACGGGGGCTATTCCACTTTTGGAGAGGGCCC
TCTCAATCTTGACGAAGAGGCTCGGGTTCAACCACCCAGACACGGTCAGC
ACTCAGAACAGCCTGGAAGCTGTGCGAAAAATGGTTTGGGCACAACTGGA
TAGTCGTTAG
back to top