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Homology
BLAST of mRNA_Ecto-sp9_F_contig977.17862.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U6_ECTSI) HSP 1 Score: 437 bits (1124), Expect = 1.060e-147 Identity = 289/335 (86.27%), Postives = 293/335 (87.46%), Query Frame = 1
Query: 55 MENTNSSHDLSFDVLGVLPTFPTTTPLEPSLIASHTRTARPQSHHSYALGGEGIASAGTGGSTESGLEQGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXXXAQGGRDVVRRLMDEVTELRARLKATSMAFQTRENSVAELREAVQTLTLDLRAGQEKARAQTRKLEQQGRESQEQQVTITHLEESCARCEERAEVAEKTAEEKCAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKDKESLLFEKGQTQERVKDLTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQ 1059
MENTNSS DLSFDVLGVLPT PTTTPLEPSLI SHTRT RPQSHHSYALGGEGIAS GTGGSTESGLEQGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXX AQGGRDVVRRLMDEVTELRARLKATS AFQTRENSVA+LREAVQTLTLDLRAGQEKARAQ+RKLEQQ CAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARK+KESLLFEKGQTQERVK+LTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQ
Sbjct: 1 MENTNSSQDLSFDVLGVLPTVPTTTPLEPSLIGSHTRTGRPQSHHSYALGGEGIAS-GTGGSTESGLEQGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXXRAQGGRDVVRRLMDEVTELRARLKATSTAFQTRENSVADLREAVQTLTLDLRAGQEKARAQSRKLEQQ-----------------------------------CAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKEKESLLFEKGQTQERVKELTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQ 299
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1059 |
| Cds size | 1059 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig977.17862.1 >prot_Ecto-sp9_F_contig977.17862.1 ID=prot_Ecto-sp9_F_contig977.17862.1|Name=mRNA_Ecto-sp9_F_contig977.17862.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=353bp
SGSWTLGRDRDRDCRDTGMENTNSSHDLSFDVLGVLPTFPTTTPLEPSLI
ASHTRTARPQSHHSYALGGEGIASAGTGGSTESGLEQGFERESYDSDQEL
EAIRGSVRSLRAQRAAVEKLKEKARLQEGTAEELRRKLREAEGKVRELRA
QGGRDVVRRLMDEVTELRARLKATSMAFQTRENSVAELREAVQTLTLDLR
AGQEKARAQTRKLEQQGRESQEQQVTITHLEESCARCEERAEVAEKTAEE
KCAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKDKES
LLFEKGQTQERVKDLTSMCERQRSKLADAGHRARELERLASAAKKETRLA
QEQ back to topmRNA from alignment at Ecto-sp9_F_contig977:71..3091- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig977.17862.1 ID=mRNA_Ecto-sp9_F_contig977.17862.1|Name=mRNA_Ecto-sp9_F_contig977.17862.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3021bp|location=Sequence derived from alignment at Ecto-sp9_F_contig977:71..3091- (Ectocarpus species9 EcSCA_722f female)
TCAGGGTCGTGGACACTTGGTCGAGACAGAGACAGAGACTGTAGAGACAC
AGGGATGGAGAACACGAACAGCAGCCACGATCTGTCGTTCGATGTCCTCG
GGGTACTGCCGACCTTCCCGACAACCACACCACTCGAACCCAGCCTCATC
GCTTCGCACACACGCACCGCGCGGCCTCAGTCCCACCATTCATATGCTCT
GGGAGGAGAAGGCATAGCATCAGGTATGTTTTACGTGGGCGTGGACCACA
CGCGGGGAGTGCGGCAAGCTGCGGCGCGTTAGGGGAGACGATGCTTTGTG
CAATGGACACGTTATTTGTTGGTGTGTCTGCTAGGTCCGCAATAAATATA
GGGTTTGGGTTTAGTATTTGTTTTTTGGTGTGTTTAGTTGTGGTTTTGGG
GACGCAATATCCCGTGTGTGCATTGCGGCCAGCTGCTAGTGTCTGAAGCG
AGGGCCACATCGCATGTGTTTCTAGATGGATCTGGCGCGCGATGTTCGTG
AAGATGCAGGCAGAGTGTTACGTTTTTGGCATGTCGTTTCATAGAGCACG
CCGCGCTGTGTCATTTGCTCCCCACGCTCTTTCTCGTTTGCCCTCTCCTA
CGGCAATCACGTCGCCGGCGTAGTACGATACACGACACCACATCCACCAA
TGCTGCCGATTGCTCAAATGTACATAGCAGGCACTGGTGGGAGCACAGAA
TCTGGTCTTGAGCAAGGGTTCGAGCGAGAAAGCTACGACTCAGACCAAGA
GCTGGAAGCGATCCGAGGATCGGTGCGCAGTCTCCGCGCGCAGCGGGCTG
CCGTGGAGAAGCTGAAGGAGAAGGCACGGCTGCAGGAAGGCACGGCAGAA
GAGCTCAGACGCAAGCTTCGGGAAGCGGAGGGAAAAGTTCGTGAGCTCAG
GGCTCAGGGAGGACGAGATGTCGTGCGACGCCTCATGGACGAGGTGACCA
ATGGCTGCCAATTTTTTTTTTTGCAAAAACAGAAAAAGTTCCAATCTCTA
GATCCAGGAAATATTCGCTATGATTTCATGGTTTTTGTACACCTTGTGTT
GGCAACAAGGTTGGAAAGTCTTCCCCACCAAGTGGAAAAGGGACGGGTAT
CATGGTCCACCGAGAGGGTGCGTCTCACTGCATAAACAGTGCCAGAGTTA
AATTGACAAATTAAGGAAGACACGAAGAGCACTCTTGTACCGCTGCTTGG
GGGCCCGGTTCTGCCGTCCAAGAGACTCTCAAGACCCCGTGAGCGATCGA
TACGCTGCTCGCTCGCTCGCCCCTTAGGGTTGGTGAGTGTTTTAGGATTA
ACCCCTACCCTAACCCTACCCTTACCCTGAATGACTGTCTCTTGTCATCC
CTACCCCTACCCTTACCCTGAATGATTGTCTCTTGTAATCCCTACCCCAA
CCCTTACCCTGAATGATTGTCTCTTGTCATCCCTACCCCAACCCTACCCT
ATCCAGACCCTAAACACCCCTCTCGTGTCGTCTGTATTCACACGCCGCCG
TAACAAATCTGCAAGGTAACCGAGCTGCGTGCTCGGCTCAAGGCCACTTC
GATGGCCTTTCAGACGCGGGAGAACAGCGTAGCCGAGCTGCGGGAAGCCG
TACAGACCCTGACCCTGGATTTGCGCGCCGGACAGGAGAAAGCGAGAGCG
CAGACTCGAAAGCTCGAACAGCAGGTGACGTCGGGAAATAGTTGCAGGAC
TTGGTCCGAACACCTTTTTTTTTTTCCCGTGAGGAACATGACTGTCAGGC
ACAGGTGTGTTGATTCATGCTGCTCGGGCCACGCCCAGCTGATGTTGATT
TTGAGTGCATTGCCTATTCATGTATCCATCCACTCGCGCTATGAGGCACG
TATGCCACTGGCCTCATTTAGCTCACCTACAGAGCAGACAGAGGAGCCCC
ACCTATGTAGTCGGGACGTGCGCGTTGTAGATCTCAATCAGGGAGGGCAG
TGTTGCCTCACACCCACCATCTCGTCTCCTCGGACGTTGCGATAGCAACA
CTGCTGTAACTGTCGTCGATCTCACCCTCGCCTCTCGCGACTTCCTCTCC
CAAGGGCCGAGAATCGCAGGAGCAGCAGGTGACTATCACCCACTTGGAGG
AATCTTGTGCGAGGTGCGAGGAGAGGGCAGAGGTGGCGGAGAAAACAGCG
GAGGAAAAGGTACAACACACCGACAACGAACCCTTGTTCATCGTTCGTGT
CCACGGTTTGATACCCGTTTACGGCGTGGAGCTCATCACGCCAAGCTTAG
CTATGCCCGTCAAGCTGCAAAGAGCCGTGTCCCTGTCGTTAAGTCTTGCT
GTGTCGAGACTTGTTTCTCGGGTCGAGGTTGTTCGGGCGCTAGCTTTGAT
TGAATTTCGTCTTGTTCCTGATTGCCTGGCCACCCCTTTGCTCTTTTGTC
GGCGTTGCGTTGTTGCAGTGCGCTGCCTCTGGCCGCGAGTTAGCGTCACT
GTCAGCGCTCTTGAGAGAGGCCAACGCCACTCTCGACGCGTCTAAAGGGA
GCATGCAAGCCACAGTGGCGAAGCAGGCGGAGAAACTCGAAGCTGCCCGC
AAGGTGAGCGTCGAGGAGAGTTACGTGTTTCCCGTTTGCGTCGCAGCAGA
ATGTGCTTCTGCTGCTGCTGTCAGAGTCGGATGTTTGCGTCGAATAGATC
GTACGCATCACTTCGTTCTCTAGAACAAAGTAGCTTCTCAACCCTGTCGC
AGTCCTTTGGACCCTGGCGTTTTTTGTTGCTCGGGCTTGTTGCTAAGGGA
ATTGAACTGAACAAGCGCTGCCGTTGATTGTGCGCAAATAGCCGAACGAT
CTCACTCGTCGATACTGACGGATTGTGCCCTGTCCTTCCATCGCCGTCAG
GACAAAGAGTCTCTGTTGTTCGAGAAAGGCCAGACTCAGGAACGTGTAAA
GGACCTCACGTCCATGTGCGAACGGCAGCGGTCGAAGCTCGCCGATGCCG
GGCATCGCGCCAGAGAGCTTGAACGATTGGCTTCGGCTGCGAAAAAGGAA
ACCAGGCTGGCGCAGGAGCAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig977:71..3091- >mRNA_Ecto-sp9_F_contig977.17862.1 ID=mRNA_Ecto-sp9_F_contig977.17862.1|Name=mRNA_Ecto-sp9_F_contig977.17862.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2118bp|location=Sequence derived from alignment at Ecto-sp9_F_contig977:71..3091- (Ectocarpus species9 EcSCA_722f female)
TCAGGGTCGTGGACACTTGGTCGAGACAGAGACAGAGACTGTAGAGACAC
AGGGATGGAGAACACGAACAGCAGCCACGATCTGTCGTTCGATGTCCTCG
GGGTACTGCCGACCTTCCCGACAACCACACCACTCGAACCCAGCCTCATC
GCTTCGCACACACGCACCGCGCGGCCTCAGTCCCACCATTCATATGCTCT
GGGAGGAGAAGGCATAGCATCAGTCAGGGTCGTGGACACTTGGTCGAGAC
AGAGACAGAGACTGTAGAGACACAGGGATGGAGAACACGAACAGCAGCCA
CGATCTGTCGTTCGATGTCCTCGGGGTACTGCCGACCTTCCCGACAACCA
CACCACTCGAACCCAGCCTCATCGCTTCGCACACACGCACCGCGCGGCCT
CAGTCCCACCATTCATATGCTCTGGGAGGAGAAGGCATAGCATCAGCAGG
CACTGGTGGGAGCACAGAATCTGGTCTTGAGCAAGGGTTCGAGCGAGAAA
GCTACGACTCAGACCAAGAGCTGGAAGCGATCCGAGGATCGGTGCGCAGT
CTCCGCGCGCAGCGGGCTGCCGTGGAGAAGCTGAAGGAGAAGGCACGGCT
GCAGGAAGGCACGGCAGAAGAGCTCAGACGCAAGCTTCGGGAAGCGGAGG
GAAAAGTTCGTGAGCTCAGGGCTCAGGGAGGACGAGATGTCGTGCGACGC
CTCATGGACGAGCAGGCACTGGTGGGAGCACAGAATCTGGTCTTGAGCAA
GGGTTCGAGCGAGAAAGCTACGACTCAGACCAAGAGCTGGAAGCGATCCG
AGGATCGGTGCGCAGTCTCCGCGCGCAGCGGGCTGCCGTGGAGAAGCTGA
AGGAGAAGGCACGGCTGCAGGAAGGCACGGCAGAAGAGCTCAGACGCAAG
CTTCGGGAAGCGGAGGGAAAAGTTCGTGAGCTCAGGGCTCAGGGAGGACG
AGATGTCGTGCGACGCCTCATGGACGAGGTAACCGAGCTGCGTGCTCGGC
TCAAGGCCACTTCGATGGCCTTTCAGACGCGGGAGAACAGCGTAGCCGAG
CTGCGGGAAGCCGTACAGACCCTGACCCTGGATTTGCGCGCCGGACAGGA
GAAAGCGAGAGCGCAGACTCGAAAGCTCGAACAGCAGGTAACCGAGCTGC
GTGCTCGGCTCAAGGCCACTTCGATGGCCTTTCAGACGCGGGAGAACAGC
GTAGCCGAGCTGCGGGAAGCCGTACAGACCCTGACCCTGGATTTGCGCGC
CGGACAGGAGAAAGCGAGAGCGCAGACTCGAAAGCTCGAACAGCAGGGCC
GAGAATCGCAGGAGCAGCAGGTGACTATCACCCACTTGGAGGAATCTTGT
GCGAGGTGCGAGGAGAGGGCAGAGGTGGCGGAGAAAACAGCGGAGGAAAA
GGGCCGAGAATCGCAGGAGCAGCAGGTGACTATCACCCACTTGGAGGAAT
CTTGTGCGAGGTGCGAGGAGAGGGCAGAGGTGGCGGAGAAAACAGCGGAG
GAAAAGTGCGCTGCCTCTGGCCGCGAGTTAGCGTCACTGTCAGCGCTCTT
GAGAGAGGCCAACGCCACTCTCGACGCGTCTAAAGGGAGCATGCAAGCCA
CAGTGGCGAAGCAGGCGGAGAAACTCGAAGCTGCCCGCAAGTGCGCTGCC
TCTGGCCGCGAGTTAGCGTCACTGTCAGCGCTCTTGAGAGAGGCCAACGC
CACTCTCGACGCGTCTAAAGGGAGCATGCAAGCCACAGTGGCGAAGCAGG
CGGAGAAACTCGAAGCTGCCCGCAAGGACAAAGAGTCTCTGTTGTTCGAG
AAAGGCCAGACTCAGGAACGTGTAAAGGACCTCACGTCCATGTGCGAACG
GCAGCGGTCGAAGCTCGCCGATGCCGGGCATCGCGCCAGAGAGCTTGAAC
GATTGGCTTCGGCTGCGAAAAAGGAAACCAGGCTGGCGCAGGAGCAGGAC
AAAGAGTCTCTGTTGTTCGAGAAAGGCCAGACTCAGGAACGTGTAAAGGA
CCTCACGTCCATGTGCGAACGGCAGCGGTCGAAGCTCGCCGATGCCGGGC
ATCGCGCCAGAGAGCTTGAACGATTGGCTTCGGCTGCGAAAAAGGAAACC
AGGCTGGCGCAGGAGCAG back to top
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