mRNA_Ecto-sp9_F_contig9747.17846.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9747.17846.1
Unique NamemRNA_Ecto-sp9_F_contig9747.17846.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX8_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.350e-68
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 357
            MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSA EPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE
Sbjct:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSASEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 119
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BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW60_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.100e-64
Identity = 116/119 (97.48%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:    1 MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAKQWESLEPAVKLWTERDNDE 357
            M EP LERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTAL LLQENAKQWESLEPAVKLWTERDNDE
Sbjct:    1 MSEPRLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSISEERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALGLLQENAKQWESLEPAVKLWTERDNDE 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9747.17846.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.350e-6899.16protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HTH1.100e-6497.48La-type RNA-binding domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9747contigEcto-sp9_F_contig9747:218..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.4262528-CDS-Ecto-sp9_F_contig9747:217..2861622931065.4262528-CDS-Ecto-sp9_F_contig9747:217..286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9747 218..286 -
1692279016.3919084-CDS-Ecto-sp9_F_contig9747:217..2861692279016.3919084-CDS-Ecto-sp9_F_contig9747:217..286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9747 218..286 -
1622931065.4393618-CDS-Ecto-sp9_F_contig9747:792..10801622931065.4393618-CDS-Ecto-sp9_F_contig9747:792..1080Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9747 793..1080 -
1692279016.4021184-CDS-Ecto-sp9_F_contig9747:792..10801692279016.4021184-CDS-Ecto-sp9_F_contig9747:792..1080Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9747 793..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9747.17846.1prot_Ecto-sp9_F_contig9747.17846.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9747 218..1080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9747.17846.1

>prot_Ecto-sp9_F_contig9747.17846.1 ID=prot_Ecto-sp9_F_contig9747.17846.1|Name=mRNA_Ecto-sp9_F_contig9747.17846.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MGEPGLERRAGCKRARRTTAVSIAMRAVLVLLMGAPHIPTLDALKLSSIS
EERGHLGVGLLRAVEVVRGRYERAWTLVSAPEPTAEDLDTALELLQENAK
QWESLEPAVKLWTERDNDE
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mRNA from alignment at Ecto-sp9_F_contig9747:218..1080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9747.17846.1 ID=mRNA_Ecto-sp9_F_contig9747.17846.1|Name=mRNA_Ecto-sp9_F_contig9747.17846.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=863bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9747:218..1080- (Ectocarpus species9 EcSCA_722f female)
ATGGGCGAGCCCGGGCTGGAGCGTCGTGCTGGTTGCAAGCGTGCTCGGAG
AACAACGGCGGTGTCGATCGCCATGAGAGCTGTGCTGGTGCTGCTGATGG
GTGCGCCTCACATCCCAACCCTCGACGCTCTCAAGCTCTCGTCGATCAGC
GAGGAACGTGGGCACCTGGGCGTGGGGCTACTGCGCGCTGTGGAGGTGGT
GCGGGGCCGCTACGAGCGTGCCTGGACGCTCGTCTCTGCCCCCGAGCCTA
CTGCTGAGGACCTCGACACCGCGCTGGAGTTGCTACAGGTACATGTGTGT
GTGCATTTCTTTCTGCTGCCGGTGCTGCAACCTGAAATAACCCTGGTGAT
GTCGTTGGGATTTTGATTTTCATACTGGTGTTTATACGGGTGCTTGGCGC
ACAATTTTTGCCTTTGTTGCCCCTGCGGTCCACATGATGTCTCATCCTGG
TCTAGCATGAAACATGCACGCATGCGCAGACCACGTCGGTGTGCGGGTGA
GCGTCGCTGCACAGCACCGCAGCGTATTGCCGGCGACCGCTCGTGCAGGG
CAGGCCGTGTTCACGTGCGGTCTGGATGCCGAGCTTGCTGTAGTAGTGCA
GATGTGTGCTTGTAGTCTCGCTCTCTCTCAGTAGTGCCTGTAACGGACGG
ACACGTGGTGAGCCACACAGGCTCGTCGCTGCACGTGTCCATGTGGCACA
GAACCCCCCCCCAAGAAGGAACCAACAGCATCTGACCACGCGTCGTCTCT
CTCTCTCTCTCGCTTGTGCCGGCACTTTGTTCCCCGTCCTTCAGGAGAAC
GCCAAGCAGTGGGAGAGTCTCGAGCCCGCGGTGAAGCTCTGGACGGAGCG
AGATAACGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9747:218..1080-

>mRNA_Ecto-sp9_F_contig9747.17846.1 ID=mRNA_Ecto-sp9_F_contig9747.17846.1|Name=mRNA_Ecto-sp9_F_contig9747.17846.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9747:218..1080- (Ectocarpus species9 EcSCA_722f female)
ATGGGCGAGCCCGGGCTGGAGCGTCGTGCTGGTTGCAAGCGTGCTCGGAG
AACAACGGCGGTGTCGATCGCCATGAGAGCTGTGCTGGTGCTGCTGATGG
GTGCGCCTCACATCCCAACCCTCGACGCTCTCAAGCTCTCGTCGATCAGC
GAGGAACGTGGGCACCTGGGCGTGGGGCTACTGCGCGCTGTGGAGGTGGT
GCGGGGCCGCTACGAGCGTGCCTGGACGCTCGTCTCTGCCCCCGAGCCTA
CTGCTGAGGACCTCGACACCGCGCTGGAGTTGCTACAGATGGGCGAGCCC
GGGCTGGAGCGTCGTGCTGGTTGCAAGCGTGCTCGGAGAACAACGGCGGT
GTCGATCGCCATGAGAGCTGTGCTGGTGCTGCTGATGGGTGCGCCTCACA
TCCCAACCCTCGACGCTCTCAAGCTCTCGTCGATCAGCGAGGAACGTGGG
CACCTGGGCGTGGGGCTACTGCGCGCTGTGGAGGTGGTGCGGGGCCGCTA
CGAGCGTGCCTGGACGCTCGTCTCTGCCCCCGAGCCTACTGCTGAGGACC
TCGACACCGCGCTGGAGTTGCTACAGGAGAACGCCAAGCAGTGGGAGAGT
CTCGAGCCCGCGGTGAAGCTCTGGACGGAGCGAGATAACGACGAGGAGAA
CGCCAAGCAGTGGGAGAGTCTCGAGCCCGCGGTGAAGCTCTGGACGGAGC
GAGATAACGACGAG
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