prot_Ecto-sp9_F_contig9709.17814.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9709.17814.1
Unique Nameprot_Ecto-sp9_F_contig9709.17814.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.950e-28
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLV +++ +
Sbjct:    5 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQ 59          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RFD8_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 7.360e-24
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    6 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 60          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.180e-24
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIY+VG KKA VD FP VVHLV +++ +
Sbjct:   33 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYDVGQKKAGVDYFPCVVHLVSDEKEQ 87          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=174 Tax=Oomycota TaxID=4762 RepID=M4BZN7_HYAAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.500e-23
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 59          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLK8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.810e-23
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY++GNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDIGNKKASVDAFPFVAHLVSDEKEQ 59          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.950e-23
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PARCYRFQKNKP+IKSRYCRGVPDPKIRIYE GNK+  VD FP V+HLV +++ +
Sbjct:   33 PARCYRFQKNKPYIKSRYCRGVPDPKIRIYECGNKRMGVDHFPYVIHLVSDEKEQ 87          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-22
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 59          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC85_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.670e-22
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PARC RFQKNKP+IKSRYCRGVPDPKIRI++ GNKKASVD FP V HLV +++ +
Sbjct:    5 PARCSRFQKNKPYIKSRYCRGVPDPKIRIFDCGNKKASVDQFPFVAHLVSDEKEQ 59          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal (protein L10 (Fragment) n=345 Tax=Oomycota TaxID=4762 RepID=A0A6G6C483_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.770e-22
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    2 ARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            A+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    1 AKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDAFPFVAHLVSDEKEQ 54          
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: 60S (ribosomal protein L10 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7Y2_9CRUS)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 55
            PARCYR+QK+KP+IKSRYCRGVPDPKIRIY+VGNK A  D FP+ VHLV +++ +
Sbjct:   13 PARCYRYQKDKPYIKSRYCRGVPDPKIRIYDVGNKSAVADQFPLCVHLVSQEKEQ 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal_L162.950e-2889.09domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ribosomal_L167.360e-2474.55domain-containing protein (Fragment) n=1 Tax=Spong... [more]
Hypothetical8.180e-2480.00protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Ribosomal_L162.500e-2376.36domain-containing protein n=174 Tax=Oomycota TaxID... [more]
Ribosomal_L165.810e-2374.55domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Hypothetical6.950e-2374.55protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Ribosomal_L161.110e-2274.55domain-containing protein n=4 Tax=Pythium TaxID=47... [more]
Ribosomal_L162.670e-2274.55domain-containing protein n=1 Tax=Aureococcus anop... [more]
Ribosomal5.770e-2274.07protein L10 (Fragment) n=345 Tax=Oomycota TaxID=47... [more]
60S1.240e-2170.91ribosomal protein L10 (Fragment) n=1 Tax=Hirondell... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10coord: 1..55
e-value: 4.2E-19
score: 70.9
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..52
IPR001197Ribosomal protein L10ePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 1..51
NoneNo IPR availablePANTHERPTHR11726:SF34coord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9709contigEcto-sp9_F_contig9709:2665..2829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9709.17814.1mRNA_Ecto-sp9_F_contig9709.17814.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9709 2665..2829 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9709.17814.1 ID=prot_Ecto-sp9_F_contig9709.17814.1|Name=mRNA_Ecto-sp9_F_contig9709.17814.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVR
EKRAE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036920Ribosomal_L10e/L16_sf
IPR001197Ribosomal_L10e