prot_Ecto-sp9_F_contig9683.17787.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9683.17787.1
Unique Nameprot_Ecto-sp9_F_contig9683.17787.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length56
Homology
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.500e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    3 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 51
            QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV
Sbjct:  173 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 221          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2U3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.190e-22
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 51
            ++VDAIIRSGL+RFTDEVGRLWCKLAD+YIRLGQFERARD+YEE IN+VV
Sbjct:   53 LKVDAIIRSGLARFTDEVGRLWCKLADFYIRLGQFERARDIYEEGINAVV 102          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA78_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.640e-21
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0
Query:    3 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRTI 56
            QVDAIIRSGL+RFTDEVGRLWCKLADYYIRLGQFERARDVYEE I +V  VRD T+
Sbjct:  177 QVDAIIRSGLTRFTDEVGRLWCKLADYYIRLGQFERARDVYEEGITTVITVRDFTM 232          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.480e-21
Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 51
            ++VDAIIRSGL+RFTDEVGRLWCKLADYYIRLGQFERARDV+EE INSV+
Sbjct:  229 LKVDAIIRSGLARFTDEVGRLWCKLADYYIRLGQFERARDVFEEGINSVM 278          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-19
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRTI 56
            ++VDAIIRSGL+RFTDE G+LWCKLADYYIR GQFERARDVYEEA+++V  VRD T+
Sbjct:  247 LKVDAIIRSGLARFTDETGKLWCKLADYYIRQGQFERARDVYEEALSTVLTVRDFTM 303          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7N0_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 4.940e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 51
            + VDA+IRSGL+RFTDEVG+LWCKLADYYIRLG FE ARDVYEEA+ +VV
Sbjct:  236 LDVDALIRSGLARFTDEVGKLWCKLADYYIRLGDFEDARDVYEEAVTTVV 285          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7Z3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVVRDR 54
            + VD IIRSGLSRF DEVGRLWCKLADYYIRLG+FE AR+VYEEA+ +VV  R
Sbjct:  295 LDVDQIIRSGLSRFRDEVGRLWCKLADYYIRLGRFEEARNVYEEAVTTVVTAR 347          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Fand (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZM72_9DINO)

HSP 1 Score: 85.5 bits (210), Expect = 4.380e-18
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 51
            + V+AIIRSGL RFTDEVGRLWC LADY+IRLG+FERARDVYEE + +V+
Sbjct:  221 LNVEAIIRSGLRRFTDEVGRLWCALADYFIRLGEFERARDVYEEGVQAVI 270          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: LOW (QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like n=1 Tax=Rhinopithecus bieti TaxID=61621 RepID=UPI00083C74B2)

HSP 1 Score: 82.0 bits (201), Expect = 1.440e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRT 55
            + VDAIIR GL+RFTD++G+LWC LADYYIR G FE+ARDVYEEAI +V  VRD T
Sbjct:   73 LNVDAIIRXGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFT 128          
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6TM12_MOUSE)

HSP 1 Score: 82.4 bits (202), Expect = 1.540e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    2 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRT 55
            + VDAIIR GL+RFTD++G+LWC LADYYIR G FE+ARDVYEEAI +V  VRD T
Sbjct:  225 LNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFT 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.500e-24100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.190e-2286.00protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Uncharacterized1.640e-2185.71protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Glycine--tRNA2.480e-2188.00ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Pre-mRNA-splicing1.040e-1977.19factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
Uncharacterized4.940e-1980.00protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical1.720e-1877.36protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Fand4.380e-1876.00protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
LOW1.440e-1771.43QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-lik... [more]
Pre-mRNA-splicing1.540e-1771.43factor SYF1 (Fragment) n=1 Tax=Mus musculus TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..55
e-value: 2.2E-7
score: 32.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 20..54
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 21..47
e-value: 2.7E-6
score: 27.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 23..47
e-value: 0.0025
score: 15.9
NoneNo IPR availablePANTHERPTHR11246:SF5PRE-MRNA-SPLICING FACTOR SYF1coord: 5..52
NoneNo IPR availablePANTHERPTHR11246PRE-MRNA SPLICING FACTORcoord: 5..52
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 20..53
score: 8.142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9683contigEcto-sp9_F_contig9683:686..853 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9683.17787.1mRNA_Ecto-sp9_F_contig9683.17787.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9683 677..853 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9683.17787.1 ID=prot_Ecto-sp9_F_contig9683.17787.1|Name=mRNA_Ecto-sp9_F_contig9683.17787.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp
MVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV
VRDRTI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013105TPR_2
IPR002885Pentatricopeptide_repeat
IPR019734TPR_repeat