mRNA_Ecto-sp9_F_contig9683.17787.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9683.17787.1
Unique NamemRNA_Ecto-sp9_F_contig9683.17787.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.080e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   16 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 162
            QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV
Sbjct:  173 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 221
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2U3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.260e-22
Identity = 43/54 (79.63%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 IAGMVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 162
            ++  ++VDAIIRSGL+RFTDEVGRLWCKLAD+YIRLGQFERARD+YEE IN+VV
Sbjct:   49 VSDTLKVDAIIRSGLARFTDEVGRLWCKLADFYIRLGQFERARDIYEEGINAVV 102
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.950e-22
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    7 GMVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 162
            G ++VDAIIRSGL+RFTDEVGRLWCKLADYYIRLGQFERARDV+EE INSV+
Sbjct:  227 GTLKVDAIIRSGLARFTDEVGRLWCKLADYYIRLGQFERARDVFEEGINSVM 278
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA78_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.860e-21
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   16 QVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRTI 177
            QVDAIIRSGL+RFTDEVGRLWCKLADYYIRLGQFERARDVYEE I +V  VRD T+
Sbjct:  177 QVDAIIRSGLTRFTDEVGRLWCKLADYYIRLGQFERARDVYEEGITTVITVRDFTM 232
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 90.9 bits (224), Expect = 6.360e-20
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 IAGMVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRTI 177
            I+  ++VDAIIRSGL+RFTDE G+LWCKLADYYIR GQFERARDVYEEA+++V  VRD T+
Sbjct:  243 ISRRLKVDAIIRSGLARFTDETGKLWCKLADYYIRQGQFERARDVYEEALSTVLTVRDFTM 303
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7N0_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 5.630e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   13 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 162
            + VDA+IRSGL+RFTDEVG+LWCKLADYYIRLG FE ARDVYEEA+ +VV
Sbjct:  236 LDVDALIRSGLARFTDEVGKLWCKLADYYIRLGDFEDARDVYEEAVTTVV 285
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7Z3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.960e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   13 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVVRDR 171
            + VD IIRSGLSRF DEVGRLWCKLADYYIRLG+FE AR+VYEEA+ +VV  R
Sbjct:  295 LDVDQIIRSGLSRFRDEVGRLWCKLADYYIRLGRFEEARNVYEEAVTTVVTAR 347
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Fand (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZM72_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 2.670e-18
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 IAGMVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSVV 162
            +AG+  V+AIIRSGL RFTDEVGRLWC LADY+IRLG+FERARDVYEE + +V+
Sbjct:  218 VAGL-NVEAIIRSGLRRFTDEVGRLWCALADYFIRLGEFERARDVYEEGVQAVI 270
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: LOW (QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like n=1 Tax=Rhinopithecus bieti TaxID=61621 RepID=UPI00083C74B2)

HSP 1 Score: 82.0 bits (201), Expect = 1.630e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRT 174
            + VDAIIR GL+RFTD++G+LWC LADYYIR G FE+ARDVYEEAI +V  VRD T
Sbjct:   73 LNVDAIIRXGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFT 128
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BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6TM12_MOUSE)

HSP 1 Score: 82.4 bits (202), Expect = 1.750e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 VQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV--VRDRT 174
            + VDAIIR GL+RFTD++G+LWC LADYYIR G FE+ARDVYEEAI +V  VRD T
Sbjct:  225 LNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFT 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9683.17787.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.080e-23100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.260e-2279.63protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Glycine--tRNA5.950e-2286.54ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Uncharacterized1.860e-2185.71protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Pre-mRNA-splicing6.360e-2073.77factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
Uncharacterized5.630e-1980.00protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical1.960e-1877.36protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Fand2.670e-1874.07protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
LOW1.630e-1771.43QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-lik... [more]
Pre-mRNA-splicing1.750e-1771.43factor SYF1 (Fragment) n=1 Tax=Mus musculus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9683contigEcto-sp9_F_contig9683:677..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D7G3C6
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.1071126-UTR-Ecto-sp9_F_contig9683:676..6851622931057.1071126-UTR-Ecto-sp9_F_contig9683:676..685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9683 677..685 +
1692279012.608085-UTR-Ecto-sp9_F_contig9683:676..6851692279012.608085-UTR-Ecto-sp9_F_contig9683:676..685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9683 677..685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.1213017-CDS-Ecto-sp9_F_contig9683:685..8531622931057.1213017-CDS-Ecto-sp9_F_contig9683:685..853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 686..853 +
1692279012.6204627-CDS-Ecto-sp9_F_contig9683:685..8531692279012.6204627-CDS-Ecto-sp9_F_contig9683:685..853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 686..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9683.17787.1prot_Ecto-sp9_F_contig9683.17787.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9683 686..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9683.17787.1

>prot_Ecto-sp9_F_contig9683.17787.1 ID=prot_Ecto-sp9_F_contig9683.17787.1|Name=mRNA_Ecto-sp9_F_contig9683.17787.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp
MVQVDAIIRSGLSRFTDEVGRLWCKLADYYIRLGQFERARDVYEEAINSV
VRDRTI
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mRNA from alignment at Ecto-sp9_F_contig9683:677..853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9683.17787.1 ID=mRNA_Ecto-sp9_F_contig9683.17787.1|Name=mRNA_Ecto-sp9_F_contig9683.17787.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9683:677..853+ (Ectocarpus species9 EcSCA_722f female)
ATTGCTGGCATGGTACAGGTGGACGCCATCATCCGCAGCGGGCTGTCGAG
GTTCACCGACGAGGTGGGGCGACTGTGGTGCAAGCTGGCGGACTACTACA
TCCGCCTGGGTCAGTTCGAGAGGGCCCGCGACGTTTACGAGGAGGCCATC
AACAGTGTGGTGAGAGACCGAACGATC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9683:677..853+

>mRNA_Ecto-sp9_F_contig9683.17787.1 ID=mRNA_Ecto-sp9_F_contig9683.17787.1|Name=mRNA_Ecto-sp9_F_contig9683.17787.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9683:677..853+ (Ectocarpus species9 EcSCA_722f female)
ATGGTACAGGTGGACGCCATCATCCGCAGCGGGCTGTCGAGGTTCACCGA
CGAGGTGGGGCGACTGTGGTGCAAGCTGGCGGACTACTACATCCGCCTGG
GTCAGTTCGAGAGGGCCCGCGACGTTTACGAGGAGGCCATCAACAGTGTG
GTGAGAGACCGAACGATCATGGTACAGGTGGACGCCATCATCCGCAGCGG
GCTGTCGAGGTTCACCGACGAGGTGGGGCGACTGTGGTGCAAGCTGGCGG
ACTACTACATCCGCCTGGGTCAGTTCGAGAGGGCCCGCGACGTTTACGAG
GAGGCCATCAACAGTGTGGTGAGAGACCGAACGATC
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