prot_Ecto-sp9_F_contig968.17784.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig968.17784.1
Unique Nameprot_Ecto-sp9_F_contig968.17784.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length253
Homology
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BLAST of mRNA_Ecto-sp9_F_contig968.17784.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 4.520e-119
Identity = 171/175 (97.71%), Postives = 175/175 (100.00%), Query Frame = 0 
Query:   78 SKRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPDLRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAIYLTFKVRGDRFNSILDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 252
            S+RNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLP+LRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKA+YLTFKVRGDRFNS+LDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR
Sbjct:   31 SQRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPELRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAVYLTFKVRGDRFNSLLDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig968.17784.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.520e-11997.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026100Transmembrane protein 223PFAMPF14640TMEM223coord: 120..210
e-value: 8.8E-6
score: 26.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 135..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig968contigEcto-sp9_F_contig968:21585..26267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig968.17784.1mRNA_Ecto-sp9_F_contig968.17784.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig968 21585..26267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig968.17784.1 ID=prot_Ecto-sp9_F_contig968.17784.1|Name=mRNA_Ecto-sp9_F_contig968.17784.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=253bp
MLQVLRWRAVRHGRGYLAIAGAPRCASAPKQRFLAAASKRSSDPPVASTE
GLEEHEAGSSTATDQQDDPRHILLYEGSKRNVRISSSVTVVNGLYWSFYV
GVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPDLRLL
SIGTHNFFGAERMPRLVRLGGTVVSRTKPKAIYLTFKVRGDRFNSILDTA
DGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKR
RR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026100Tmem223