mRNA_Ecto-sp9_F_contig968.17784.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig968.17784.1
Unique NamemRNA_Ecto-sp9_F_contig968.17784.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig968.17784.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 4.520e-119
Identity = 171/175 (97.71%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:  232 SKRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPDLRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAIYLTFKVRGDRFNSILDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 756
            S+RNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLP+LRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKA+YLTFKVRGDRFNS+LDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR
Sbjct:   31 SQRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPELRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAVYLTFKVRGDRFNSLLDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig968.17784.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.520e-11997.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig968contigEcto-sp9_F_contig968:21585..26267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006170.1
Exons7
Model size759
Cds size759
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.5290601-CDS-Ecto-sp9_F_contig968:21584..218211622931056.5290601-CDS-Ecto-sp9_F_contig968:21584..21821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 21585..21821 +
1692279012.4558308-CDS-Ecto-sp9_F_contig968:21584..218211692279012.4558308-CDS-Ecto-sp9_F_contig968:21584..21821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 21585..21821 +
1622931056.5464087-CDS-Ecto-sp9_F_contig968:23685..237951622931056.5464087-CDS-Ecto-sp9_F_contig968:23685..23795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 23686..23795 +
1692279012.4680753-CDS-Ecto-sp9_F_contig968:23685..237951692279012.4680753-CDS-Ecto-sp9_F_contig968:23685..23795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 23686..23795 +
1622931056.5609455-CDS-Ecto-sp9_F_contig968:24269..243271622931056.5609455-CDS-Ecto-sp9_F_contig968:24269..24327Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 24270..24327 +
1692279012.4782686-CDS-Ecto-sp9_F_contig968:24269..243271692279012.4782686-CDS-Ecto-sp9_F_contig968:24269..24327Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 24270..24327 +
1622931056.573203-CDS-Ecto-sp9_F_contig968:24796..248681622931056.573203-CDS-Ecto-sp9_F_contig968:24796..24868Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 24797..24868 +
1692279012.4881077-CDS-Ecto-sp9_F_contig968:24796..248681692279012.4881077-CDS-Ecto-sp9_F_contig968:24796..24868Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 24797..24868 +
1622931056.5893023-CDS-Ecto-sp9_F_contig968:25233..253171622931056.5893023-CDS-Ecto-sp9_F_contig968:25233..25317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 25234..25317 +
1692279012.4995592-CDS-Ecto-sp9_F_contig968:25233..253171692279012.4995592-CDS-Ecto-sp9_F_contig968:25233..25317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 25234..25317 +
1622931056.6030924-CDS-Ecto-sp9_F_contig968:25653..257581622931056.6030924-CDS-Ecto-sp9_F_contig968:25653..25758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 25654..25758 +
1692279012.510195-CDS-Ecto-sp9_F_contig968:25653..257581692279012.510195-CDS-Ecto-sp9_F_contig968:25653..25758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 25654..25758 +
1622931056.6160474-CDS-Ecto-sp9_F_contig968:26174..262671622931056.6160474-CDS-Ecto-sp9_F_contig968:26174..26267Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 26175..26267 +
1692279012.519338-CDS-Ecto-sp9_F_contig968:26174..262671692279012.519338-CDS-Ecto-sp9_F_contig968:26174..26267Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 26175..26267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig968.17784.1prot_Ecto-sp9_F_contig968.17784.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig968 21585..26267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig968.17784.1

>prot_Ecto-sp9_F_contig968.17784.1 ID=prot_Ecto-sp9_F_contig968.17784.1|Name=mRNA_Ecto-sp9_F_contig968.17784.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=253bp
MLQVLRWRAVRHGRGYLAIAGAPRCASAPKQRFLAAASKRSSDPPVASTE
GLEEHEAGSSTATDQQDDPRHILLYEGSKRNVRISSSVTVVNGLYWSFYV
GVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPDLRLL
SIGTHNFFGAERMPRLVRLGGTVVSRTKPKAIYLTFKVRGDRFNSILDTA
DGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKR
RR*
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mRNA from alignment at Ecto-sp9_F_contig968:21585..26267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig968.17784.1 ID=mRNA_Ecto-sp9_F_contig968.17784.1|Name=mRNA_Ecto-sp9_F_contig968.17784.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4683bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:21585..26267+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGCAAGTTCTTCGATGGAGGGCCGTAAGGCATGGAAGAGGATATCT
TGCGATTGCGGGTGCGCCACGTTGTGCTTCAGCCCCGAAGCAGCGGTTCC
TTGCTGCTGCATCAAAACGGAGCAGTGATCCACCTGTCGCCTCTACTGAA
GGTCTTGAAGAACACGAGGCGGGCAGCAGTACTGCAACGGACCAGCAGGA
TGACCCCAGGCACATCCTACTCTATGAAGGCTCCAAGGTATTTGCTGCAC
ACGATATTTGCACTGCTATATCTTTCGACAAGAGGCTCTGATCTCCGACA
CAGCAGCACACAAAGGCAGACGTCACGGTGACATGTTCCAATACAACAGC
AGCGCAACGGGAACATGTTTCGAAAGGGCCAGCCACGAATGCGTTATCCC
TTCATAATAGCCCGGGGGTAGCCCCGGCCTCATCTGAAGCTCTTTCGCTT
GTTCCCCAGGGAGGGTATGTATGTGTGGGGTCGAGGATGCTGTAGTTGGG
GGCGGTGATGAAGATGATGGATAAGTCCATCCATGGATGTGACATGAAAG
AAGCGAAGAAGGAAGAAGGAAAGAGACACAATTTCTCCCCGTTTTCGACT
TAAACTCCACTCGACGTGCGCACGGGGGAGATCTACGAATATGACATACA
ACAACGGACGCGTTCTCACGAGCTGACACAAGCGTTAGCACCAAACTCGC
ATGAGGGGCGGAACGGGCCAGGAGGGACACCTCTTCCAACCCACACGAAA
TCCTGTCGGTGGAATCTCGAGAAACATCGACCGAAGAAAACAACTTGCTT
TTAGAGAAGAGACCGGAGATCTCCTGCTCTACAACCACGTGAAAATGCAG
AGAGTGGGGTCACTTTTTGGTGGGGTCAAAATCGAATGAGAATTTCCGCG
ACAGAAACTGAATCCCTATCGGGCTTCAGAATCGGCAGCGGTGTGGCTGC
TGTGGTGCCATGTACCATGTCTGCACAAAACCGCGGACCAAGCCGTAGCG
CAAGTCAATCTCTTGCAGGGGCGACCGCGCGCGGTCTGGATGAGTAATGC
ACACCGTTGGTGACGTTAGATGCCACGCTCCCTGGACCGATTTCAAAAAC
TCGACTACTACTCCACCATGACGAGGATGCATGAATCGAACGAGACGTTA
TCGAAAAGCTCTCGACCAGCCGTTGGTCATTCCTCCATTTTCGGCACCGG
CACTCCCTGTGCTGTGGAGTAGTAGAGCTTTGAAAATCGGTCCAGTGGGG
GGTGGTATCTTGTGTTATGTCACCTGCGGTAGCCCGGTATACTGCTGTAG
CCCTGTAGACCTCACTTGCCGGTATCTCAAAACGATAAGGTTCAGTGTTT
TCCTTTGGCAAATCGAGGAAATGCTTGGACTTTGGGGTTGAAAGTATTCC
AACTTCAGCTCAAAACTTGCTCAAGAGAAATGTACCAATTGTGTTCATCG
AGTGTCTTATCAAGGTACTTTTGAGGTACAACCAGTGTCTCATCAGCTAC
TTGTATATCGCTTGATTTTCGACACTTCGGCTGTTGGCAGCTTTTGAAAC
GAGGCCTTGTTGTTCGAGCCGGTGTGCGCCACAAGCCTCCTGTCTACAGA
GAAAGTACTTACCGTTCCTGGAGGGCTACTCCGTGGCGGAACTCAAGGGA
ATGAGGTTAAGGCTGTCAGTCATCTTTCAAACTGTTTCCACTCGCTGGCG
GGTGACTGGAGCCGCATGCACCTACCGAGACCCTAACGATAGCCTGCTTT
TGGCTTGCAGCGTCTCTCATGCAAAGAGTACTGGAACCATTATCAAGAGG
CCGTGATGTCGCCGGCAGAGCTGTTTAAGCGTGAAGCCCTTGATGATTTA
CGCCCTGTACGACCATGTAATAGCTCGAGCAGGTTCCAAACTTTTAACTC
AAAACGAGCGCTGAGTAGTCGTTGATGTCCTCAACGGAAATGTGCCACTT
CTGCTTCTCTCGGCTCCCGCCCTAGTTTGGCTCTTGGGGCCAACTACAAG
CTCCTGAGATGTATATAGGCATGCGCACCAACGTGACCCAACGAATCAGA
GACTGCGCTCGCCGAGTCCCCACCCTCTCTCTGTCCTCTTGTGTCTCACA
GAGGAACGTTAGAATATCGAGTTCCGTAACGGTGGTAAACGGCCTCTACT
GGTCGTTCTACGTCGGCGTCCTGGAGCCTCACCTTCCAACCACAACTTGG
GAACCGTGGGGGTAAGCTCGTAGCATATTTTACTGTGGGTGTTATGTGGG
GTGTTGTAGCATACGTTCTGTAGGTGTGCGTGATCAGCAGTGGTGAAGAC
GCAACGTCGTGACGCATTGGGTTCGTTGCGCTATGCGCGTGCGTCAATGG
TCTTGGACGTTGGAGTGTGGCTGGTTGAATCATCTTTTTTCTCGTGGGAT
TACGCGGAACGCTCGAGAGCTGCCACGACCAATTCGAGCAGGATTAATGA
GGTAGCCGACGTGCCCTATACCGCATACCACCCCCAGGTACCGTTAGTGT
TGTGGAAATGTGGTGATGGAGTAGTGTGTTATGCCCGCGCGACTTTGCTT
TGCTTATGGCCGAAATCTCTCGTAGATTCCGAACGTGCTCCTTACGCTGT
CCACTCCCGTGCCTTTTTTCTTCATGTGGTGTGCTCCTCCCTCTCGCCCC
GTCTACCCCTCGCTTTCTGTCTTTTCGACACCAAGATACCTGGGACTTGG
CTTCACGGCCATCATGACCGCTGCTACTCATACATTCGCTAGGGTGAGTG
ACGCGTGCTACGTGTGGCAGCTGCTACGGAAGCCCAAAGCCGGTTGTGAC
CGATGTCATGGGTATGGTTTCTTCCCCGACGCTTGCTAGGGTTCCAGGGC
GGCGCGGATCTGACTGTCATGTTTCTGTTGTTGTTCGTGCGCTTGGAGTC
TGGTCGAGTTGGAGTACTCGACAAAATTGACGAAAAATGTTCCGGGCGCA
TAACCCCCTCTCTGGCAAGCAATTGGCAGTAAATATGGTCGATCTTGGGG
ATGTGAGTATCCAGTTGGTGGCGGAAGCCCGAGGTTGGTTTCCTGCCTGC
GATAGCAGACGGAGATGCTTGAAAACACAAGGACCACGGCATGTCGCGCT
AGAATGATGACATCCATCGTGCACTTGGTCGTGGTAGTTGCGGTACGCGT
GCACTAATTCAATTTGTCCCGACTCCCCCTCGCCGAACAACCCGCTTTGT
TGCCCCACGCAGCATTGGGTCAGCCAGATTTCGTATCTGCCGGATCTAAG
ATTACTTTCCATCGGCACGCACAATTTCTTTGGGGTGAGCAAACTTGGGT
AAAAACATCCTGACGATGGCCCCGCTGTTTCTCGTGAAAATGCTGCCGCT
GCCCAAGAAGACCCCGCTTTGCTGATTGTGACACTGTGTTGCTGTGCTGT
CCAATCTCATCTTCGTCCCGTGTATTCATGAAGGAGGGGCAATGCCGGGA
AATGGAACGACTAATTGAGCTAAGCAAAGAATAATTGAGCTGTTCTGTTT
GACGATGCAACAAGGGCCGGTTTTACGCTTCTTCTAGTTTCCCTCTCTGC
ATTTTGTCTGATGTCAAAGTTGTGACTTGTTCCTCCACCTAGGTCTCCTT
TCGTGAAACCAAACACAACGTTTGATCCAATGCTCTCGGCGTTCCTCAGG
CGGAGAGGATGCCGCGGTTGGTCAGGCTCGGCGGAACGGTGGTTTCACGC
ACAAAGCCCAAGGCGATATACTTGACGTTCAAGGTGAGGTAGCGAGTTTA
AGTCCTGTGATAGCTGCCGGGGTGGCGGCTTGGGCGGAAAGGGAGGGTCG
GTCATGTGTTTGGCGCCGTCGTCGTGGTCGATCGTGGATCATGATTGTAG
TTTTCTGGCGATTTTTCAATGAATCAGTTGTCGGTGATGCCAGTAGATCG
TGCGTTGGCGAGCGTTTTTCATCAACTTCGGTTGGCACAGCCGTCGCGTA
ATTCCATGTCTACAAGTCTTATCCGAGACCAGCACCCATCGCAATGGCCA
GGCCCGCAATGAAGCACGCCGATCGTCTTTTTCCTCTTTCGTGGTGCTTG
CGTAACGCGCGGCTTCTAGGTTAGAGGAGACAGGTTCAACTCAATTCTTG
ACACCGCCGATGGGGTGTTCCACAACAGAGAGATGCTCATGAGACTGCTC
AAGGCTTCGCCAAACGGAGAAGTGGTAAGTCCTGTGGGGGGTGTGCCTAG
CGCACCGTTTTTTTTTTTTTGTCGGGGGCCGTCCGGGGAGCGATCGTGCC
GGGTCGAAATTTTGCAGGGAGCCTACGCGTGCGTGCGTTGCAGTGTAGTC
TGGCGGCGACAACGTGCAAGTTACACGTCCTTGAGGGAGGTCGGCATACT
CGTAGGTGTGCTGTTCTCGGTGGGCGCGTTGTCGCGTCCGACCGGTGACT
GCGTGCGTGTAACCGCAGCAGCTTATCTATCGACCCCGCCCCTCAAGTGT
ACCGTTATCATTGACCGTAGAGGAACTGAGATTACGCGTAAATGGCCGTC
GGTTGAGAGTGTTTGCGATCTCGCTGACGTGCGTGTCTTGATTCGCTATT
GCTGTTTCTGTCCCTCGGGCTGTTTGTTATCGTTCCCCAGGCGGATCCTT
CCGCCGCAGCAAAGGACAGTAACGGTTCGCCCGCCCCCGGCAAAAAGAAA
CAGAAATGGAACAAGCGAAAGCGTCGTCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig968:21585..26267+

>mRNA_Ecto-sp9_F_contig968.17784.1 ID=mRNA_Ecto-sp9_F_contig968.17784.1|Name=mRNA_Ecto-sp9_F_contig968.17784.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:21585..26267+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGCAAGTTCTTCGATGGAGGGCCGTAAGGCATGGAAGAGGATATCT
TGCGATTGCGGGTGCGCCACGTTGTGCTTCAGCCCCGAAGCAGCGGTTCC
TTGCTGCTGCATCAAAACGGAGCAGTGATCCACCTGTCGCCTCTACTGAA
GGTCTTGAAGAACACGAGGCGGGCAGCAGTACTGCAACGGACCAGCAGGA
TGACCCCAGGCACATCCTACTCTATGAAGGCTCCAAGATGCTGCAAGTTC
TTCGATGGAGGGCCGTAAGGCATGGAAGAGGATATCTTGCGATTGCGGGT
GCGCCACGTTGTGCTTCAGCCCCGAAGCAGCGGTTCCTTGCTGCTGCATC
AAAACGGAGCAGTGATCCACCTGTCGCCTCTACTGAAGGTCTTGAAGAAC
ACGAGGCGGGCAGCAGTACTGCAACGGACCAGCAGGATGACCCCAGGCAC
ATCCTACTCTATGAAGGCTCCAAGAGGAACGTTAGAATATCGAGTTCCGT
AACGGTGGTAAACGGCCTCTACTGGTCGTTCTACGTCGGCGTCCTGGAGC
CTCACCTTCCAACCACAACTTGGGAACCGTGGGGAGGAACGTTAGAATAT
CGAGTTCCGTAACGGTGGTAAACGGCCTCTACTGGTCGTTCTACGTCGGC
GTCCTGGAGCCTCACCTTCCAACCACAACTTGGGAACCGTGGGGATACCT
GGGACTTGGCTTCACGGCCATCATGACCGCTGCTACTCATACATTCGCTA
GGATACCTGGGACTTGGCTTCACGGCCATCATGACCGCTGCTACTCATAC
ATTCGCTAGGCATTGGGTCAGCCAGATTTCGTATCTGCCGGATCTAAGAT
TACTTTCCATCGGCACGCACAATTTCTTTGGGCATTGGGTCAGCCAGATT
TCGTATCTGCCGGATCTAAGATTACTTTCCATCGGCACGCACAATTTCTT
TGGGGCGGAGAGGATGCCGCGGTTGGTCAGGCTCGGCGGAACGGTGGTTT
CACGCACAAAGCCCAAGGCGATATACTTGACGTTCAAGGCGGAGAGGATG
CCGCGGTTGGTCAGGCTCGGCGGAACGGTGGTTTCACGCACAAAGCCCAA
GGCGATATACTTGACGTTCAAGGTTAGAGGAGACAGGTTCAACTCAATTC
TTGACACCGCCGATGGGGTGTTCCACAACAGAGAGATGCTCATGAGACTG
CTCAAGGCTTCGCCAAACGGAGAAGTGGTTAGAGGAGACAGGTTCAACTC
AATTCTTGACACCGCCGATGGGGTGTTCCACAACAGAGAGATGCTCATGA
GACTGCTCAAGGCTTCGCCAAACGGAGAAGTGGCGGATCCTTCCGCCGCA
GCAAAGGACAGTAACGGTTCGCCCGCCCCCGGCAAAAAGAAACAGAAATG
GAACAAGCGAAAGCGTCGTCGCTAGGCGGATCCTTCCGCCGCAGCAAAGG
ACAGTAACGGTTCGCCCGCCCCCGGCAAAAAGAAACAGAAATGGAACAAG
CGAAAGCGTCGTCGCTAG
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