prot_Ecto-sp9_F_contig968.17779.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig968.17779.1
Unique Nameprot_Ecto-sp9_F_contig968.17779.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length176
Homology
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 2.970e-130
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0
Query:    1 MFWSCCTRAPKQDPDQDRVVNTKHLSCPRCRRLLIVPNVDTFRCHCSLVFSKVRDAVGGTMQLCFSLSEQELHGQGCGLPRELVERLPVTVVTEDMCAKKKQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTG 175
            MFWSCCTRAPKQDPDQDRVVNTKHLSCPRCRRLLIVPNVDTFRCHCSLVFSKVRDAVGGTMQLCFSLSEQELHGQGCGLPRELVERLPVTVVTE+MCAKKK +AVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTG
Sbjct:    1 MFWSCCTRAPKQDPDQDRVVNTKHLSCPRCRRLLIVPNVDTFRCHCSLVFSKVRDAVGGTMQLCFSLSEQELHGQGCGLPRELVERLPVTVVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTG 175          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.340e-21
Identity = 61/156 (39.10%), Postives = 82/156 (52.56%), Query Frame = 0
Query:   27 CPRCRRLLIVPNVDT---FRCHCSLVFSKVRDAVGGTMQLCFSLS------EQELHGQGCGLPRELVERLPVTVVTEDMCAKKKQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKAL 173
            C  C R+ ++P+  T   F C C    + V  A  G +    +        E   H QG    +ELV  LP TV     C K    A +A GE        DDD ++CR+CLS+YQ G+ +R+LPCFH+FH   ID+WL R+VCCPLC+  + KAL
Sbjct:   48 CTNCGRVGMLPHQSTTAVFLCPCG---TPVLAATPGQLLTLITRGGGLGALEGVHHHQGAS--KELVALLP-TVTHRGDC-KAAATAQEAFGE--------DDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKAL 188          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.510e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 0
Query:   75 QGCGLPRELVERLPVTVVTEDMCAKKKQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKA 172
            Q  G   +LVERLP     E             +  +   AE  ++D ++CR+CLSDY+ GD +RILPC H+FH   ID+WL R+V CPLC+  +  A
Sbjct:  889 QHTGASPQLVERLPTMQYQE-------------SSRKVLVAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVA 973          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: FAD (dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.340e-13
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 0
Query:  116 EPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWL-NRNVCCPLCHLDISKALTG 175
            E +D+D ++CR+CL +Y+ GD++RILPC HR+HV  +D+WL  R+  CPLC+  ++  L G
Sbjct:  261 EEVDEDKISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVVLHG 321          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.950e-13
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0
Query:  103 RAVDANGEQAP-KAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLC 165
            +A +  G   P K     DD ++CRICL DY  GD++R+LPCFHRFH     DWL R   CPLC
Sbjct:  107 KAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRKKTCPLC 170          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: Ring (u-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3U3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.060e-12
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0
Query:  103 RAVDANGEQAP-KAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLC 165
            +A +  G   P K     DD ++CRICL DY  GD++R+LPCFHRFH     DWL R   CPLC
Sbjct:  259 KAAEVPGSTPPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLC 322          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0M7_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  110 EQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR-NVCCPLCHLDISK 171
            E +  ++ +D  + TC IC+ +Y+ GD++R LPC HRFH+S ID+WL + N  CPLC  DI K
Sbjct:  288 EDSACSDALDSSTETCAICIEEYEDGDRLRELPCGHRFHISCIDEWLTKVNSVCPLCKFDIGK 350          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=11 Tax=Coffea TaxID=13442 RepID=A0A068UQG8_COFCA)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-11
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 0
Query:   44 CHCSLVF----SKVRDAVGGTMQLCFSLSE--QELHGQGCGLPRELVE-RLPVTVVTEDMCAKKKQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR-NVCCPLCHLDISKALT 174
            C C L+     S  R ++   + L  +L E   E+H Q   LP  +V    P TVV           ++     + P+     DD + C ICL++Y+ GD++RILPC H +HV+ +D WL   +  CPLC  D+ + L+
Sbjct:  403 CSCGLMLRAEESGARASISRIVMLAEALFEVLDEIHRQPMSLPLSVVSVPAPETVVD----------SLPVKIHRKPERLESGDDVIQCYICLAEYEEGDRIRILPCHHEYHVACVDKWLKEIHGVCPLCRRDVREGLS 531          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AVZ4_9ASTE)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-11
Identity = 41/134 (30.60%), Postives = 63/134 (47.01%), Query Frame = 0
Query:   44 CHCSLVFSKVRDAVGGTMQLCFSLSE--QELHGQGCGLPRELVERLPVTVVTEDMCAKKKQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR-NVCCPLCHLDISKALT 174
            C C    S    ++   + L  +L E   E+H Q   L   ++    V  V + +  K  ++         P      DD   C ICL++Y+ GDK+R+LPC H +H+S +D WL   +  CPLC  D+S+  T
Sbjct:  434 CSCEAEESSTHASISRIVMLAEALFEVLDEIHRQPVSLALSMLSLPAVESVVDSLPVKYHRK---------PDTTESGDDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVSEGFT 558          
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DYH8_9AGAR)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-11
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  102 QRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWL-NRNVCCPLCHLDISK 171
            Q A  ++    P  +P  +  + C ICLS+++ GDKVR+LPC H FH+ E+D+WL  R   CP+C  D+++
Sbjct:  145 QNASTSHPATPPTEQPWFESQLECAICLSEFEKGDKVRVLPCHHIFHLHEVDEWLIQRKKLCPICKADVTQ 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig968.17779.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type2.970e-13098.29domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical9.340e-2139.10protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
RING-type1.510e-1440.82domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
FAD4.340e-1347.54dependent oxidoreductase-domain-containing protein... [more]
RING-type4.950e-1350.00domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Ring3.060e-1250.00u-box domain-containing protein n=1 Tax=Nannochlor... [more]
RING-type1.050e-1147.62domain-containing protein n=3 Tax=Chloropicon prim... [more]
RING-type1.170e-1132.37domain-containing protein n=11 Tax=Coffea TaxID=13... [more]
RING-type1.180e-1130.60domain-containing protein n=1 Tax=Nyssa sinensis T... [more]
RING-type1.570e-1140.85domain-containing protein n=1 Tax=Candolleomyces a... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 83..172
e-value: 5.8E-16
score: 59.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 124..165
e-value: 2.4E-9
score: 37.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 125..166
score: 10.07
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 67..169
NoneNo IPR availablePANTHERPTHR45931:SF3E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 67..169
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 119..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig968contigEcto-sp9_F_contig968:332..4887 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig968.17779.1mRNA_Ecto-sp9_F_contig968.17779.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig968 332..4887 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig968.17779.1 ID=prot_Ecto-sp9_F_contig968.17779.1|Name=mRNA_Ecto-sp9_F_contig968.17779.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=176bp
MFWSCCTRAPKQDPDQDRVVNTKHLSCPRCRRLLIVPNVDTFRCHCSLVF
SKVRDAVGGTMQLCFSLSEQELHGQGCGLPRELVERLPVTVVTEDMCAKK
KQRAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVS
EIDDWLNRNVCCPLCHLDISKALTG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING