mRNA_Ecto-sp9_F_contig957.17691.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG7_ECTSI) HSP 1 Score: 466 bits (1198), Expect = 9.900e-164 Identity = 235/245 (95.92%), Postives = 237/245 (96.73%), Query Frame = 1
Query: 1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI 735
GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDM GLERY+AADG SKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATN+IK A TVGQGGD LVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI
Sbjct: 117 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMGGLERYVAADGDSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNLIKV---AATVGQGGDTLVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI 358
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C919_9STRA) HSP 1 Score: 286 bits (731), Expect = 1.050e-92 Identity = 152/239 (63.60%), Postives = 175/239 (73.22%), Query Frame = 1
Query: 1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
GMAP+TKG Y EGFE +GTNHLGHFLLANLL+ LEA PRL+VTASSVHDP TPGG+ GSKATLGDM+GL A G + KFDMVDGG YDGDKAYKDSKLCNVLFT E RRL+ + S V V+CFSPGLIP+SGLFR+QNP+F K+F FAA +++ A T+G+GGDAL M T L GG F AT+PGKP+SAF + S EA D AK +RLWELS CVGL
Sbjct: 133 GMAPATKGEAQYTKEGFEVAIGTNHLGHFLLANLLLDRLEASGAAEPRLIVTASSVHDPATPGGDVGSKATLGDMAGLA--ARATGAAPKFDMVDGGSYDGDKAYKDSKLCNVLFTRELNRRLTKKDSKVHVNCFSPGLIPTSGLFRSQNPLFVKVFGFAAGSVLGI---AATIGEGGDALSYMATSDELV--GKGGLFLATDPGKPKSAFKARTPSQEALDDAKAQRLWELSEKCVGL 364
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW84_9STRA) HSP 1 Score: 278 bits (711), Expect = 6.570e-89 Identity = 148/239 (61.92%), Postives = 176/239 (73.64%), Query Frame = 1
Query: 1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
GMAP+TKGSP + GFEET+G NHLGHFLLANLL+K LE+ +L PRLVVTASSVHDPD PGG+ GS ATLGD+SGL+ +L + KF+MVDG YDGDKAYKDSKLCNVLFT E QRRL A S V V+CFSPGLIPS+GLFRNQNP+F+K FD A + A+ A T GG L MVT + + G+FFAT+PGKP+S F+E VS EA+D+ K K LW+LSA V +
Sbjct: 183 GMAPNTKGSPKFTDAGFEETIGVNHLGHFLLANLLLKNLESSSLPQPRLVVTASSVHDPDQPGGDVGSTATLGDLSGLKGWL----DTGKFEMVDGNAYDGDKAYKDSKLCNVLFTEECQRRLDANGSKVTVNCFSPGLIPSTGLFRNQNPLFTKAFDIATS----AAGVATTAEAGGTCLSYMVTSSEID--SIKGKFFATQPGKPKSPFAEFPVSKEAQDMEKAKELWKLSAQLVNI 411
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA04_HETAK) HSP 1 Score: 253 bits (646), Expect = 7.080e-80 Identity = 142/238 (59.66%), Postives = 163/238 (68.49%), Query Frame = 1
Query: 1 GMAPSTKGSPG-YCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCV 711
GMAP+TK Y +GFEET+G NHLGHFLLA+LLIK LE+ PRLVVTASSVHDPD PGG+ GSKA LGD+ GLE Y + FDMVDGG +DGDKAYKDSKLCNVLFT E QRRL+A+ S V +CFSPGLIP+SGLFRNQNP+FS F I A A TV QGGD L +V L+ GG F T+PGKP+S F +S EA DV+K K L+ELS V
Sbjct: 133 GMAPNTKQPAAKYTAQGFEETIGVNHLGHFLLASLLIKNLESSKQANPRLVVTASSVHDPDQPGGDVGSKAALGDLLGLEGYF----QKGTFDMVDGGAFDGDKAYKDSKLCNVLFTTEMQRRLAAKGSKVTCNCFSPGLIPTSGLFRNQNPLFSGAFGL----ITGAVGVAATVEQGGDCLAYLVDAPELE--GQGGLFLTTQPGKPKSDFGPFPISKEASDVSKAKSLFELSTKLV 360
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGF5_9STRA) HSP 1 Score: 249 bits (636), Expect = 2.220e-77 Identity = 133/234 (56.84%), Postives = 163/234 (69.66%), Query Frame = 1
Query: 1 GMAPSTKGS-PGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELS 699
G+A ST + P + EGFEET+G NH GHFLLA L+ LE +L PRLVVTASSVHDP TPGGN G ATLG++ G +L K K+F+MVDGG Y GDKAYKDSKL NVLFT E RRL R+S V+ DCFSPGLIPS+GLFR+QN +F +F+F A N++ T T+ +GGD LV MV L+D +A F AT PGKP+ FS Q +S EA+D AK +R+W+LS
Sbjct: 208 GVAMSTSETMPHFTAEGFEETIGVNHFGHFLLAQKLLPNLEKSSLAHPRLVVTASSVHDPSTPGGNVGPGATLGNLKGFTDFLE---KGKRFEMVDGGSYSGDKAYKDSKLLNVLFTQEMSRRLLDRKSKVRCDCFSPGLIPSTGLFRSQNQLFVGLFNFFAVNVLGVGT---TISEGGDCLVYMVEAPELEDTSA--VFLATPPGKPKDLFSSQTISKEAQDTAKAQRVWDLS 433
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UQ39_9STRA) HSP 1 Score: 213 bits (541), Expect = 4.740e-65 Identity = 126/246 (51.22%), Postives = 159/246 (64.63%), Query Frame = 1
Query: 1 GMAPSTKGSPGYCT-EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPE-------SAFSEQAVSVEARDVAKGKRLWELSAGCVG 714
G+A +T S T EGFE TVGTNH GHF L L++ ++ T R+VVTASSVHDPD+PGG QGSKATLG + GL+R DG F+MVDG ++D DKAYKDSKLCNVLFT E QRRL + +KV+CFSPGLI +GLFR+QNPIF+K+FD AATN++K +V GG L M+ + ++ + GG F+ PG + F+ VS EARD AK + LWELS +G
Sbjct: 50 GIARNTAASECLRTKEGFELTVGTNHFGHFYLNQLILPKIKQN---TGRIVVTASSVHDPDSPGGAQGSKATLGTLEGLKR----DGNM--FEMVDGEKFDADKAYKDSKLCNVLFTRELQRRLDKDGTGIKVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLKVGE---SVHWGGGTLEYMILDKTVA--SKGGLFYTAAPGSGKYGDDAYGKQFAPAEVSKEARDDAKARELWELSDKLLG 281
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8I2_9STRA) HSP 1 Score: 217 bits (552), Expect = 6.120e-65 Identity = 124/234 (52.99%), Postives = 157/234 (67.09%), Query Frame = 1
Query: 43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKA--STHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKP---ESAFSEQ----AVSVEARDVAKGKRLWELSAGCVGL 717
EGFE TVGTNHLGHF L NL++ ++ T R+VVTAS VHDP +PGG QGS ATLGD+SG+ +FDMVDGG +D DKAYKDSKLCNVLFT E QRRL A +K +CF+PGLI +GLFR+QNP+F+K+FDFAAT+++K STH GG +L M + ++ G+ GG ++ + PG ++AF EQ VS EA+D AK K LW+LS VGL
Sbjct: 214 EGFELTVGTNHLGHFYLCNLILPQVKKN---TGRIVVTASGVHDPKSPGGAQGSLATLGDLSGIT-------SGPQFDMVDGGPFDPDKAYKDSKLCNVLFTRELQRRLDASGVGIKANCFNPGLIVGTGLFRDQNPLFTKVFDFAATDLLKVGESTH-----WGGGSLEYMTLDRTV--GSKGGFYYTSPPGSSKYGDAAFGEQFAPMQVSEEAQDDAKAKNLWDLSEKLVGL 430
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HJM0_9CRYP) HSP 1 Score: 213 bits (543), Expect = 1.530e-64 Identity = 122/225 (54.22%), Postives = 143/225 (63.56%), Query Frame = 1
Query: 43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
+GFE TVGTNHLGHF L LL+ +E PR+VVTAS VHDP +PGGN GSKATLGDM GL + +++MVDGG +D DKAYKDSKLCNVLFT E QRRL + S V +CFSPGLI +GLFR+Q F FDF N+ K A TV GGD LV M SL+ G G + ++PGK F E VS EA+D KGKRLWELS + L
Sbjct: 133 DGFEITVGTNHLGHFYLTQLLLDAVEKSP-EAPRIVVTASQVHDPSSPGGNVGSKATLGDMQGLAAGI-------EWEMVDGGGWDADKAYKDSKLCNVLFTRELQRRLQEKGSRVSCNCFSPGLITRTGLFRDQGGFFLSAFDFIVNNVAKV---AETVSFGGDCLVTMAVSESLE-GKRGVFWSNSKPGK--HTFEEVEVSAEAKDAEKGKRLWELSEQAITL 343
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XU82_HEMAN) HSP 1 Score: 212 bits (540), Expect = 1.540e-64 Identity = 126/240 (52.50%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 4 MAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRS--AVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
++ K P EGFE TVGTNHLGHFLL NLL+ L A R R+VVTAS VHDP++PGGN GSKATLG M+GLER ++DMVDGG +DGDK+YKDSKLCNVLFT E RL + V V+CFSPGLI SGLFRNQ +F +FDFA NI K TV GGD L+EM L G +G + ++PGK F + AVS EA+D K +LW LS L
Sbjct: 80 LSTGAKPPPPRTKEGFELTVGTNHLGHFLLCNLLLNEL-AKNQRGARIVVTASQVHDPESPGGNVGSKATLGTMAGLER-------GGEWDMVDGGPFDGDKSYKDSKLCNVLFTRELSTRLKNSNAFKGVTVNCFSPGLITKSGLFRNQGSVFVPVFDFAVNNIFKVGE---TVEFGGDCLLEMACSKRLA-GVSGDFWANSQPGK--HTFEKFAVSAEAQDAVKAAKLWRLSVKATKL 305
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSM7_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.620e-64 Identity = 118/232 (50.86%), Postives = 150/232 (64.66%), Query Frame = 1
Query: 43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESA-------FSEQAVSVEARDVAKGKRLWELSAGCVGL 717
+GFE T+GTNHLGHF L NLL++ E + R+VVTAS VHDPD+PGG QGS ATLGD++GLE+ F+M+DGG++D DKAYKDSKLCNV FT E +RRL+ S ++ CF+PGLI +GLFR QN +F+KIFD AATN++K T GG AL M ++ G ++ ++PG + F E VS EA D AKGKRLWELSA VG+
Sbjct: 142 DGFELTIGTNHLGHFYLTNLLLQ--ENKIKKNGRIVVTASGVHDPDSPGGAQGSLATLGDLTGLEQ-------GPSFEMIDGGKFDPDKAYKDSKLCNVFFTRELKRRLAESGSNIETCCFNPGLIVGTGLFREQNKVFTKIFDVAATNVLKVGE---TTSFGGGALEYMALSTDVKSG----EYYTSKPGSSKYGDDAYGVQFKETMVSKEALDAAKGKRLWELSAKLVGV 357 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig957.17691.1 >prot_Ecto-sp9_F_contig957.17691.1 ID=prot_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=245bp MAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVback to top mRNA from alignment at Ecto-sp9_F_contig957:24054..28091- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig957.17691.1 ID=mRNA_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4038bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:24054..28091- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig957:24054..28091- >mRNA_Ecto-sp9_F_contig957.17691.1 ID=mRNA_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1470bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:24054..28091- (Ectocarpus species9 EcSCA_722f female)back to top |