mRNA_Ecto-sp9_F_contig957.17690.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig957.17690.1
Unique NamemRNA_Ecto-sp9_F_contig957.17690.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig957.17690.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG6_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 8.120e-120
Identity = 265/279 (94.98%), Postives = 269/279 (96.42%), Query Frame = 1 
Query:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVADLLKPKRHGQRDGSAAAAEGAPAALDLEEISRGSTALHAACGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILELLVEGAAAPACDDGFLARKLLLQLSDARGYQPLHCAVRDGARARDTVLTLLEVGAEVDGGALPALPPPPTPLMLAALKVLPAIAKVLIEAGANVNVR 837
            MRQGGHSKRPREGNSALYTAVCRGDADLVA+LLKPK HGQRDGSAAAA GAPAALDLEE+SRGSTALHA CGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRER  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILELLVEGAAA ACDDG LARKLLLQLSDARG+QPLHCAVRDGARARDTVL LL +GAEVDGGALPALPPPPTPLMLAALKVLPAIAKVLIEAGANVN R
Sbjct:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKPHGQRDGSAAAAAGAPAALDLEELSRGSTALHAGCGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRERDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILELLVEGAAAAACDDGLLARKLLLQLSDARGHQPLHCAVRDGARARDTVLALLGMGAEVDGGALPALPPPPTPLMLAALKVLPAIAKVLIEAGANVNAR 279
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BLAST of mRNA_Ecto-sp9_F_contig957.17690.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F6_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.300e-55
Identity = 95/105 (90.48%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVADLLKPKRHGQRDGSAAAAEGAPAALDLEEISRGSTALHAACGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAV 315
            MRQGGHSK PREGNSALYTAVCRGDA+L A+LLK KRHGQ DGSAAAA GAPAALDLEE+SRGSTALHAACGT QSRIVAMLIEAGADPNTV PKDGYSPLLIAV
Sbjct:    1 MRQGGHSKPPREGNSALYTAVCRGDANLAAELLKSKRHGQPDGSAAAAAGAPAALDLEELSRGSTALHAACGTWQSRIVAMLIEAGADPNTVSPKDGYSPLLIAV 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig957.17690.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.120e-12094.98protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.300e-5590.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig957contigEcto-sp9_F_contig957:21177..22097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.5
Seed ortholog evalue2.4e-95
Seed eggNOG ortholog2880.D7FVG6
KEGG koko:K16726
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-09_001010.1
Exons2
Model size890
Cds size888
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.7287173-CDS-Ecto-sp9_F_contig957:21176..212691622931042.7287173-CDS-Ecto-sp9_F_contig957:21176..21269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 21177..21269 +
1692279005.7721996-CDS-Ecto-sp9_F_contig957:21176..212691692279005.7721996-CDS-Ecto-sp9_F_contig957:21176..21269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 21177..21269 +
1622931042.7430809-CDS-Ecto-sp9_F_contig957:21302..220971622931042.7430809-CDS-Ecto-sp9_F_contig957:21302..22097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 21303..22097 +
1692279005.7833-CDS-Ecto-sp9_F_contig957:21302..220971692279005.7833-CDS-Ecto-sp9_F_contig957:21302..22097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 21303..22097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig957.17690.1prot_Ecto-sp9_F_contig957.17690.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig957 21177..22097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig957.17690.1

>prot_Ecto-sp9_F_contig957.17690.1 ID=prot_Ecto-sp9_F_contig957.17690.1|Name=mRNA_Ecto-sp9_F_contig957.17690.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=296bp
MRQGGHSKRPREGNSALYTAVCRGDADLVADLLKPKRHGQRDGSAAAAEG
APAALDLEEISRGSTALHAACGTGQSRIVAMLIEAGADPNTVRPKDGYSP
LLIAVEVRERGIVKALLEAKADPELSSHAEGIAPLHMAASQGMTEIVLDL
LRAGANQLQPTLGKLLAPIHYASFSGCVDILELLVEGAAAPACDDGFLAR
KLLLQLSDARGYQPLHCAVRDGARARDTVLTLLEVGAEVDGGALPALPPP
PTPLMLAALKVLPAIAKVLIEAGANVNVRQVDGETVLHISARMCDA
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mRNA from alignment at Ecto-sp9_F_contig957:21177..22097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig957.17690.1 ID=mRNA_Ecto-sp9_F_contig957.17690.1|Name=mRNA_Ecto-sp9_F_contig957.17690.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=921bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:21177..22097+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGCAGGGGGGGCACTCCAAGCGGCCGCGGGAGGGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGAGACGCCGATCTTGTGGCGGACGTCTGCC
GGGGAGACGCCGATCTTGTGGCGGAGCTCCTGAAGCCGAAGCGACATGGG
CAGCGCGACGGGAGCGCGGCGGCGGCGGAAGGCGCACCGGCAGCGTTAGA
CTTGGAGGAGATCTCCCGTGGCTCCACCGCCCTCCACGCCGCCTGCGGGA
CGGGGCAGTCCCGGATCGTGGCAATGCTGATCGAGGCGGGGGCCGACCCT
AACACGGTCAGGCCCAAAGACGGCTACAGCCCTCTCCTGATTGCCGTGGA
GGTGAGGGAGCGAGGTATCGTCAAGGCTCTGCTGGAGGCCAAGGCGGACC
CGGAATTGTCCAGCCACGCCGAGGGCATCGCACCCCTCCACATGGCCGCC
TCGCAGGGGATGACGGAAATCGTCCTCGACTTGCTGCGCGCCGGCGCGAA
CCAGCTGCAGCCCACGCTGGGCAAGCTGCTTGCCCCCATCCACTACGCCA
GCTTCTCCGGTTGCGTGGACATCCTCGAGCTGCTCGTGGAGGGAGCAGCC
GCGCCGGCGTGCGACGATGGCTTCCTCGCGCGCAAGCTCCTGCTCCAGCT
GAGCGACGCGCGGGGCTACCAGCCCCTGCACTGCGCCGTTCGGGACGGGG
CACGCGCCCGGGACACGGTGTTGACGCTGCTCGAGGTGGGCGCCGAGGTG
GACGGCGGGGCCCTCCCGGCCCTCCCGCCGCCCCCGACCCCGCTGATGCT
CGCGGCCCTGAAGGTCTTGCCGGCGATCGCCAAGGTCCTCATCGAGGCCG
GCGCGAACGTCAACGTTCGACAGGTGGACGGCGAGACGGTCCTCCACATT
TCTGCCCGCATGTGCGACGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig957:21177..22097+

>mRNA_Ecto-sp9_F_contig957.17690.1 ID=mRNA_Ecto-sp9_F_contig957.17690.1|Name=mRNA_Ecto-sp9_F_contig957.17690.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1776bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:21177..22097+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGCAGGGGGGGCACTCCAAGCGGCCGCGGGAGGGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGAGACGCCGATCTTGTGGCGGACATGCGGC
AGGGGGGGCACTCCAAGCGGCCGCGGGAGGGAAACTCCGCCCTGTACACC
GCCGTCTGCCGGGGAGACGCCGATCTTGTGGCGGACCTCCTGAAGCCGAA
GCGACATGGGCAGCGCGACGGGAGCGCGGCGGCGGCGGAAGGCGCACCGG
CAGCGTTAGACTTGGAGGAGATCTCCCGTGGCTCCACCGCCCTCCACGCC
GCCTGCGGGACGGGGCAGTCCCGGATCGTGGCAATGCTGATCGAGGCGGG
GGCCGACCCTAACACGGTCAGGCCCAAAGACGGCTACAGCCCTCTCCTGA
TTGCCGTGGAGGTGAGGGAGCGAGGTATCGTCAAGGCTCTGCTGGAGGCC
AAGGCGGACCCGGAATTGTCCAGCCACGCCGAGGGCATCGCACCCCTCCA
CATGGCCGCCTCGCAGGGGATGACGGAAATCGTCCTCGACTTGCTGCGCG
CCGGCGCGAACCAGCTGCAGCCCACGCTGGGCAAGCTGCTTGCCCCCATC
CACTACGCCAGCTTCTCCGGTTGCGTGGACATCCTCGAGCTGCTCGTGGA
GGGAGCAGCCGCGCCGGCGTGCGACGATGGCTTCCTCGCGCGCAAGCTCC
TGCTCCAGCTGAGCGACGCGCGGGGCTACCAGCCCCTGCACTGCGCCGTT
CGGGACGGGGCACGCGCCCGGGACACGGTGTTGACGCTGCTCGAGGTGGG
CGCCGAGGTGGACGGCGGGGCCCTCCCGGCCCTCCCGCCGCCCCCGACCC
CGCTGATGCTCGCGGCCCTGAAGGTCTTGCCGGCGATCGCCAAGGTCCTC
ATCGAGGCCGGCGCGAACGTCAACGTTCGACAGGTGGACGGCGAGACGGT
CCTCCACATTTCTGCCCGCATGTGCGACGCGCTCCTGAAGCCGAAGCGAC
ATGGGCAGCGCGACGGGAGCGCGGCGGCGGCGGAAGGCGCACCGGCAGCG
TTAGACTTGGAGGAGATCTCCCGTGGCTCCACCGCCCTCCACGCCGCCTG
CGGGACGGGGCAGTCCCGGATCGTGGCAATGCTGATCGAGGCGGGGGCCG
ACCCTAACACGGTCAGGCCCAAAGACGGCTACAGCCCTCTCCTGATTGCC
GTGGAGGTGAGGGAGCGAGGTATCGTCAAGGCTCTGCTGGAGGCCAAGGC
GGACCCGGAATTGTCCAGCCACGCCGAGGGCATCGCACCCCTCCACATGG
CCGCCTCGCAGGGGATGACGGAAATCGTCCTCGACTTGCTGCGCGCCGGC
GCGAACCAGCTGCAGCCCACGCTGGGCAAGCTGCTTGCCCCCATCCACTA
CGCCAGCTTCTCCGGTTGCGTGGACATCCTCGAGCTGCTCGTGGAGGGAG
CAGCCGCGCCGGCGTGCGACGATGGCTTCCTCGCGCGCAAGCTCCTGCTC
CAGCTGAGCGACGCGCGGGGCTACCAGCCCCTGCACTGCGCCGTTCGGGA
CGGGGCACGCGCCCGGGACACGGTGTTGACGCTGCTCGAGGTGGGCGCCG
AGGTGGACGGCGGGGCCCTCCCGGCCCTCCCGCCGCCCCCGACCCCGCTG
ATGCTCGCGGCCCTGAAGGTCTTGCCGGCGATCGCCAAGGTCCTCATCGA
GGCCGGCGCGAACGTCAACGTTCGACAGGTGGACGGCGAGACGGTCCTCC
ACATTTCTGCCCGCATGTGCGACGCG
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