mRNA_Ecto-sp9_F_contig9563.17682.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9563.17682.1
Unique NamemRNA_Ecto-sp9_F_contig9563.17682.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Coatomer_WDAD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K868_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 9.580e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MPRACFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            MPRACFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV
Sbjct:    1 MPRACFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 109
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Vesicle (coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.720e-59
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   34 QGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ 324
            +GRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ
Sbjct:  165 KGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ 261
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Coatomer (WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.080e-48
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:   10 ACFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            ACF+ T+  GRLSYY+GGE MTLCHL+HPMYMLGYLPKEDRVYLMDK + IYSY+V Q+ LQYQTAVVRKDFE AN++LPSIP  EYTAVARFLESQGFK+EA  V
Sbjct:  536 ACFLYTSDAGRLSYYVGGEVMTLCHLDHPMYMLGYLPKEDRVYLMDKAKGIYSYKVLQSYLQYQTAVVRKDFEAANALLPSIPASEYTAVARFLESQGFKEEALAV 641
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.860e-40
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            CF+ T   G+L+Y +GGE MTLCHL HPMY+LGY+PKEDR +L+DK  N++SY++  +ML YQ+AVVR+DF TANS+LP IPK EY AVARFLESQGFK EA QV
Sbjct:  541 CFLYTNSAGKLNYLVGGEVMTLCHLSHPMYLLGYVPKEDRAFLVDKTYNVHSYKLLLSMLSYQSAVVRQDFVTANSLLPLIPKSEYPAVARFLESQGFKQEALQV 645
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.240e-40
Identity = 71/105 (67.62%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            CF+ TT   RL+YY+GG+ MTL HL+HPMY+LGYLPKEDRVYL+DKQ N  S++V Q++L+YQTAVVRKDF+ AN++LPSIP  E++ VARFLESQGFK EA  V
Sbjct:  535 CFLYTTAGNRLNYYVGGKVMTLMHLDHPMYLLGYLPKEDRVYLVDKQTNFISFKVLQSVLEYQTAVVRKDFDAANALLPSIPVSEHSDVARFLESQGFKQEAMAV 639
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0J9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.780e-38
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            CF+ T    RL+Y++GGETMTLCHL+  MYMLGYLPKEDRV+L+DK  N+ SY+V  ++L++QTAVVR D E AN ILPSIP+ E+ +VARFLESQG K+EA  V
Sbjct:   12 CFLYTNNSNRLNYFVGGETMTLCHLDQEMYMLGYLPKEDRVFLIDKALNVVSYKVLLSVLEFQTAVVRDDIEAANEILPSIPESEHNSVARFLESQGLKEEALGV 116
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Coatomer (subunit beta' n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMY1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.460e-38
Identity = 68/109 (62.39%), Postives = 90/109 (82.57%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEH----PMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            CF+ +   GRL+Y++GG TMTLCHL+     P++MLG+LPKEDRVYLMD+ +N++SYR   A+LQYQTAVVR DFE AN+ILP+IP+ E+++VARFLE+QG+KD A QV
Sbjct:  535 CFIFSNIAGRLNYFVGGNTMTLCHLDQQSTGPLFMLGFLPKEDRVYLMDRSRNVFSYRALLAVLQYQTAVVRHDFEAANTILPAIPESEHSSVARFLEAQGYKDVALQV 643
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ5_PYTOL)

HSP 1 Score: 143 bits (361), Expect = 1.610e-37
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEA 318
            CF+ T   GRL+YY+GGE MTL HLE  +YMLGYLP+E+ V+LMDK +N+YSY V   ML+YQTAVVR+DFETAN+ILP IP+ +   VARFLESQGFK+EA
Sbjct:  537 CFLYTNAGGRLNYYVGGEVMTLAHLEQKLYMLGYLPRENLVFLMDKMKNVYSYTVSLVMLEYQTAVVRRDFETANAILPKIPQDQMDYVARFLESQGFKEEA 638
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Coatomer_WDAD (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFB2_GLOUD)

HSP 1 Score: 142 bits (359), Expect = 3.000e-37
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEA 318
            CF+ T   GRL+YY+GGE MTL HLE  MYMLGYLP+E+ V+LMDK +N+YSY V   ML+YQTA+VR+DFETAN+ILP IP  +   VARFLESQGFK+EA
Sbjct:  538 CFLYTNAGGRLNYYVGGEVMTLAHLEMKMYMLGYLPRENLVFLMDKMKNVYSYMVSLVMLEYQTAIVRRDFETANAILPKIPHDQMDYVARFLESQGFKEEA 639
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BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Match: Coatomer (subunit beta' n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKY2_AURAN)

HSP 1 Score: 142 bits (358), Expect = 4.040e-37
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:   13 CFVTTTCQGRLSYYIGGETMTLCHLEH----PMYMLGYLPKEDRVYLMDKQQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQV 327
            CF+ +   GRL+Y++GG TMTLCHL+     P++M+GYLP+ED+VYLMD+ +N++ YR   A+LQYQTAVVR+DFETAN+ILP+IP+ E+++VARFLE+QG+KD A +V
Sbjct:  535 CFIFSNGAGRLNYFVGGNTMTLCHLDQQSTGPLFMIGYLPREDKVYLMDRSRNVFCYRALLAVLQYQTAVVRQDFETANTILPAIPETEHSSVARFLEAQGYKDVALEV 643
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9563.17682.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Coatomer_WDAD9.580e-68100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Vesicle1.720e-5998.97coat complex COPI, beta sub-unit n=1 Tax=Ectocarpu... [more]
Coatomer9.080e-4878.30WD associated region-domain-containing protein n=1... [more]
Hypothetical1.860e-4066.67protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Hypothetical3.240e-4067.62protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.780e-3863.81protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Coatomer2.460e-3862.39subunit beta' n=4 Tax=Pelagomonas calceolata TaxID... [more]
Uncharacterized1.610e-3766.67protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Coatomer_WDAD3.000e-3766.67domain-containing protein n=1 Tax=Globisporangium ... [more]
Coatomer4.040e-3759.63subunit beta' n=1 Tax=Aureococcus anophagefferens ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9563contigEcto-sp9_F_contig9563:3634..4347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue2.3e-48
Seed eggNOG ortholog2880.D8LNJ0
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.7368987-CDS-Ecto-sp9_F_contig9563:3633..37591622931041.7368987-CDS-Ecto-sp9_F_contig9563:3633..3759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9563 3634..3759 -
1692279005.3306358-CDS-Ecto-sp9_F_contig9563:3633..37591692279005.3306358-CDS-Ecto-sp9_F_contig9563:3633..3759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9563 3634..3759 -
1622931041.7550862-CDS-Ecto-sp9_F_contig9563:4146..43471622931041.7550862-CDS-Ecto-sp9_F_contig9563:4146..4347Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9563 4147..4347 -
1692279005.3471477-CDS-Ecto-sp9_F_contig9563:4146..43471692279005.3471477-CDS-Ecto-sp9_F_contig9563:4146..4347Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9563 4147..4347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9563.17682.1prot_Ecto-sp9_F_contig9563.17682.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9563 3634..4347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9563.17682.1

>prot_Ecto-sp9_F_contig9563.17682.1 ID=prot_Ecto-sp9_F_contig9563.17682.1|Name=mRNA_Ecto-sp9_F_contig9563.17682.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
MPRACFVTTTCQGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDK
QQNIYSYRVRQAMLQYQTAVVRKDFETANSILPSIPKGEYTAVARFLESQ
GFKDEAFQV
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mRNA from alignment at Ecto-sp9_F_contig9563:3634..4347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9563.17682.1 ID=mRNA_Ecto-sp9_F_contig9563.17682.1|Name=mRNA_Ecto-sp9_F_contig9563.17682.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9563:3634..4347- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCGTGCTTGCTTCGTCACGACGACGTGTCAGGGGAGGTTGAGCTA
CTACATCGGGGGGGAGACGATGACCTTGTGCCACTTGGAGCACCCCATGT
ACATGCTGGGCTACCTGCCCAAGGAGGACCGGGTGTACCTCATGGACAAG
CAGCAAAACATCTACAGCTACCGCGTGCGCCAGGCCATGCTGCAGTACCA
GGTGAAGCAGCAACTGTTGCTGTTGTTGGTGTTGAAGTTAGTGGTGGTGA
TGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTCCTAATGCTGCAGTACCAG
GTGGCTTAACTACTGTGGTGATGTCGGTGGTAGTGGTGATGGTGGTGTAT
GTTGTTGTTGTGGGTGGTGGTGGTGGTAGTGGGGGCGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGGTGAGTGTTGTGGTGGTCGAAGACTGTCGGGTT
GTTGTGATTGACGGCCGCTTACAACTTGTCTCCCGTCGCGCGCGAAAACT
ACACAACCCTTGGGGGCGTGTTTCATTTTCTTAGTTTTATTCCTTCTCTT
CTTGGTTCTTGTTCTTGTTCTTGTTTGCTGCCATGCAGACCGCCGTCGTG
CGGAAGGACTTCGAGACGGCCAACTCCATCCTCCCCTCCATCCCCAAGGG
AGAGTACACCGCCGTCGCCCGCTTCCTCGAGAGCCAGGGTTTCAAGGACG
AGGCGTTCCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9563:3634..4347-

>mRNA_Ecto-sp9_F_contig9563.17682.1 ID=mRNA_Ecto-sp9_F_contig9563.17682.1|Name=mRNA_Ecto-sp9_F_contig9563.17682.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9563:3634..4347- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCGTGCTTGCTTCGTCACGACGACGTGTCAGGGGAGGTTGAGCTA
CTACATCGGGGGGGAGACGATGACCTTGTGCCACTTGGAGCACCCCATGT
ACATGCTGGGCTACCTGCCCAAGGAGGACCGGGTGTACCTCATGGACAAG
CAGCAAAACATCTACAGCTACCGCGTGCGCCAGGCCATGCTGCAGTACCA
GATGCCGCGTGCTTGCTTCGTCACGACGACGTGTCAGGGGAGGTTGAGCT
ACTACATCGGGGGGGAGACGATGACCTTGTGCCACTTGGAGCACCCCATG
TACATGCTGGGCTACCTGCCCAAGGAGGACCGGGTGTACCTCATGGACAA
GCAGCAAAACATCTACAGCTACCGCGTGCGCCAGGCCATGCTGCAGTACC
AGACCGCCGTCGTGCGGAAGGACTTCGAGACGGCCAACTCCATCCTCCCC
TCCATCCCCAAGGGAGAGTACACCGCCGTCGCCCGCTTCCTCGAGAGCCA
GGGTTTCAAGGACGAGGCGTTCCAGGTGACCGCCGTCGTGCGGAAGGACT
TCGAGACGGCCAACTCCATCCTCCCCTCCATCCCCAAGGGAGAGTACACC
GCCGTCGCCCGCTTCCTCGAGAGCCAGGGTTTCAAGGACGAGGCGTTCCA
GGTG
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