mRNA_Ecto-sp9_F_contig9562.17680.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9562.17680.1
Unique NamemRNA_Ecto-sp9_F_contig9562.17680.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9562.17680.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H1_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 8.260e-31
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 RVATAEAEATWLARENHRITVESERAIGARDAEAXXXXXXXXXXLHKARAAAAAAGGARAGLRDLETHNQATSFSGDVDHG 243
            RVATAEAEATWLARENHRITVESER IGARD EA          LHKARAAAAAAGGARAGLRDLETHNQATSFS DVDHG
Sbjct:  474 RVATAEAEATWLARENHRITVESERVIGARDVEAKRAVGALTAELHKARAAAAAAGGARAGLRDLETHNQATSFSDDVDHG 554
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9562.17680.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.260e-3183.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9562contigEcto-sp9_F_contig9562:371..984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.6092062-CDS-Ecto-sp9_F_contig9562:370..5951622931041.6092062-CDS-Ecto-sp9_F_contig9562:370..595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9562 371..595 -
1692279005.296609-CDS-Ecto-sp9_F_contig9562:370..5951692279005.296609-CDS-Ecto-sp9_F_contig9562:370..595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9562 371..595 -
1622931041.6753876-CDS-Ecto-sp9_F_contig9562:960..9841622931041.6753876-CDS-Ecto-sp9_F_contig9562:960..984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9562 961..984 -
1692279005.3150923-CDS-Ecto-sp9_F_contig9562:960..9841692279005.3150923-CDS-Ecto-sp9_F_contig9562:960..984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9562 961..984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9562.17680.1prot_Ecto-sp9_F_contig9562.17680.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9562 371..984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9562.17680.1

>prot_Ecto-sp9_F_contig9562.17680.1 ID=prot_Ecto-sp9_F_contig9562.17680.1|Name=mRNA_Ecto-sp9_F_contig9562.17680.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
RVATAEAEATWLARENHRITVESERAIGARDAEAKRAVGALTAELHKARA
AAAAAGGARAGLRDLETHNQATSFSGDVDHGR*
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mRNA from alignment at Ecto-sp9_F_contig9562:371..984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9562.17680.1 ID=mRNA_Ecto-sp9_F_contig9562.17680.1|Name=mRNA_Ecto-sp9_F_contig9562.17680.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9562:371..984- (Ectocarpus species9 EcSCA_722f female)
AGGGTGGCCACAGCGGAGGCTGAGGTACGGGGAGGGTGGCCTCGGAAGAA
AGGGGCTAACCTAGGTCCGCTAAATGTCTGTCGTGCTATTATGGGAGTAT
GGATTGTGAAATAGGCATACATGGCTCATGAACTGGAATAGTCTCCCCCT
TTCCCCCGCCCCCGATGTGCGGTACTTTTCGACCCTCGCGTGGTGCCCAA
GCAGCGAGTGGACACCCCATGGGTTGAACGAAAGCTAGTACCGCAAAAAA
GACCGGGCTAGGCCGGGCACTCTTCGCCACCACCTGTCGGGGTTCCAGGT
TGGAGCAAATGATTTTTCTCCCCCTTCTGTTTCCTGAGTTCGTGGGCCGT
CGTGCTGCTGCGCCCTTGCGAACGAAAAACCGTCACCAGGCTACCTGGCT
GGCACGCGAGAACCACCGCATTACCGTAGAGTCGGAGCGGGCCATCGGGG
CTCGAGACGCGGAGGCAAAGAGAGCGGTGGGCGCTCTCACCGCAGAGCTG
CACAAAGCGCGGGCCGCCGCAGCCGCCGCTGGTGGTGCTCGAGCGGGGCT
CAGGGACCTCGAGACGCACAACCAAGCGACCTCCTTCTCAGGCGATGTCG
ATCACGGCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9562:371..984-

>mRNA_Ecto-sp9_F_contig9562.17680.1 ID=mRNA_Ecto-sp9_F_contig9562.17680.1|Name=mRNA_Ecto-sp9_F_contig9562.17680.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9562:371..984- (Ectocarpus species9 EcSCA_722f female)
AGGGTGGCCACAGCGGAGGCTGAGAGGGTGGCCACAGCGGAGGCTGAGGC
TACCTGGCTGGCACGCGAGAACCACCGCATTACCGTAGAGTCGGAGCGGG
CCATCGGGGCTCGAGACGCGGAGGCAAAGAGAGCGGTGGGCGCTCTCACC
GCAGAGCTGCACAAAGCGCGGGCCGCCGCAGCCGCCGCTGGTGGTGCTCG
AGCGGGGCTCAGGGACCTCGAGACGCACAACCAAGCGACCTCCTTCTCAG
GCGATGTCGATCACGGCAGGTGAGCTACCTGGCTGGCACGCGAGAACCAC
CGCATTACCGTAGAGTCGGAGCGGGCCATCGGGGCTCGAGACGCGGAGGC
AAAGAGAGCGGTGGGCGCTCTCACCGCAGAGCTGCACAAAGCGCGGGCCG
CCGCAGCCGCCGCTGGTGGTGCTCGAGCGGGGCTCAGGGACCTCGAGACG
CACAACCAAGCGACCTCCTTCTCAGGCGATGTCGATCACGGCAGGTGA
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