mRNA_Ecto-sp9_F_contig956.17677.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig956.17677.1
Unique NamemRNA_Ecto-sp9_F_contig956.17677.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig956.17677.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.730e-33
Identity = 105/128 (82.03%), Postives = 105/128 (82.03%), Query Frame = 1 
Query:   10 SDDTVVPYDGDVVVTCAAPATTPTLTXXXXXXXXXXXXSTGGGVTAPTTDDGTATRMPVEGTHAPGTAAPVVARGEDGDGDGXXXXXTVVIAASVAGGVALLAILGAVAYKLKXXXXXXXSYDDLVGA 393
            SDDTVVPYDGDVVVTCA PATTP   XXXXXXXXXXXX   GG      DDGTATRMPVEGTHAPGT APVVA GEDGDGD XXXXX       VAGGVALLAILGAVAYKLKXXXXXXXSYDDLVGA
Sbjct:  238 SDDTVVPYDGDVVVTCA-PATTPXXXXXXXXXXXXXXXXXDGG-----NDDGTATRMPVEGTHAPGTVAPVVAGGEDGDGDXXXXXXXXXXXXXVAGGVALLAILGAVAYKLKXXXXXXXSYDDLVGA 359
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BLAST of mRNA_Ecto-sp9_F_contig956.17677.1 vs.
Match: F5/8 (type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.910e-20
Identity = 75/129 (58.14%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:   10 SDDTVVPYDGDVVVTCAAPATTPTLTXXXXXXXXXXXXSTGGGVTAPTTDD-GTATRMPVEGTHAPGTAAPVVARGEDGDGDGXXXXXTVVIAASVAGGVALLAILGAVAYKLKXXXXXXXSYDDLVGA 393
            SD +++PYDG V VTCA PATTPTLT                    PTTDD GTATRMPVEGTH+PGTAAPVV  GE      XXXXX       VAGGVALLAILGAVAYK K       SYDD +GA
Sbjct:  515 SDGSIMPYDGAVAVTCA-PATTPTLTPATSP--------------VPTTDDDGTATRMPVEGTHSPGTAAPVVPGGEXXXXXXXXXXXXXX----VAGGVALLAILGAVAYKFKDPPP---SYDDAMGA 621
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig956.17677.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.730e-3382.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
F5/81.910e-2058.14type C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig956contigEcto-sp9_F_contig956:128..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-26_002580.1
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.9671323-CDS-Ecto-sp9_F_contig956:127..5231622931040.9671323-CDS-Ecto-sp9_F_contig956:127..523Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig956 128..523 +
1692279004.9570477-CDS-Ecto-sp9_F_contig956:127..5231692279004.9570477-CDS-Ecto-sp9_F_contig956:127..523Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig956 128..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig956.17677.1prot_Ecto-sp9_F_contig956.17677.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig956 128..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig956.17677.1

>prot_Ecto-sp9_F_contig956.17677.1 ID=prot_Ecto-sp9_F_contig956.17677.1|Name=mRNA_Ecto-sp9_F_contig956.17677.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=132bp
IARSDDTVVPYDGDVVVTCAAPATTPTLTPATSPAPTPTTTSTGGGVTAP
TTDDGTATRMPVEGTHAPGTAAPVVARGEDGDGDGGGGSDTVVIAASVAG
GVALLAILGAVAYKLKKNPPPPPSYDDLVGA*
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mRNA from alignment at Ecto-sp9_F_contig956:128..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig956.17677.1 ID=mRNA_Ecto-sp9_F_contig956.17677.1|Name=mRNA_Ecto-sp9_F_contig956.17677.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig956:128..523+ (Ectocarpus species9 EcSCA_722f female)
ATCGCCAGGTCCGACGACACCGTCGTGCCCTACGACGGAGATGTCGTGGT
CACGTGCGCGGCGCCTGCGACAACTCCAACACTGACGCCGGCAACCAGCC
CCGCGCCCACCCCCACCACCACCAGCACCGGTGGAGGGGTTACCGCGCCC
ACCACCGACGATGGTACTGCGACGCGCATGCCCGTTGAGGGCACACACGC
GCCGGGAACGGCGGCGCCGGTCGTCGCGAGAGGAGAAGACGGCGACGGAG
ATGGCGGGGGGGGCAGCGACACTGTGGTGATCGCGGCGAGCGTGGCGGGC
GGCGTGGCGCTCCTGGCGATCCTGGGAGCGGTGGCGTACAAGCTCAAGAA
GAACCCGCCGCCGCCGCCGTCTTACGACGACCTGGTCGGGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig956:128..523+

>mRNA_Ecto-sp9_F_contig956.17677.1 ID=mRNA_Ecto-sp9_F_contig956.17677.1|Name=mRNA_Ecto-sp9_F_contig956.17677.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp9_F_contig956:128..523+ (Ectocarpus species9 EcSCA_722f female)
ATCGCCAGGTCCGACGACACCGTCGTGCCCTACGACGGAGATGTCGTGGT
CACGTGCGCGGCGCCTGCGACAACTCCAACACTGACGCCGGCAACCAGCC
CCGCGCCCACCCCCACCACCACCAGCACCGGTGGAGGGGTTACCGCGCCC
ACCACCGACGATGGTACTGCGACGCGCATGCCCGTTGAGGGCACACACGC
GCCGGGAACGGCGGCGCCGGTCGTCGCGAGAGGAGAAGACGGCGACGGAG
ATGGCGGGGGGGGCAGCGACACTGTGGTGATCGCGGCGAGCGTGGCGGGC
GGCGTGGCGCTCCTGGCGATCCTGGGAGCGGTGGCGTACAAGCTCAAGAA
GAACCCGCCGCCGCCGCCGTCTTACGACGACCTGGTCGGGGCATGAATCG
CCAGGTCCGACGACACCGTCGTGCCCTACGACGGAGATGTCGTGGTCACG
TGCGCGGCGCCTGCGACAACTCCAACACTGACGCCGGCAACCAGCCCCGC
GCCCACCCCCACCACCACCAGCACCGGTGGAGGGGTTACCGCGCCCACCA
CCGACGATGGTACTGCGACGCGCATGCCCGTTGAGGGCACACACGCGCCG
GGAACGGCGGCGCCGGTCGTCGCGAGAGGAGAAGACGGCGACGGAGATGG
CGGGGGGGGCAGCGACACTGTGGTGATCGCGGCGAGCGTGGCGGGCGGCG
TGGCGCTCCTGGCGATCCTGGGAGCGGTGGCGTACAAGCTCAAGAAGAAC
CCGCCGCCGCCGCCGTCTTACGACGACCTGGTCGGGGCATGA
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