mRNA_Ecto-sp9_F_contig9557.17675.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9557.17675.1
Unique NamemRNA_Ecto-sp9_F_contig9557.17675.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9557.17675.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9557contigEcto-sp9_F_contig9557:4259..5043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size785
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9557.17675.1prot_Ecto-sp9_F_contig9557.17675.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9557 4541..5017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.6806805-UTR-Ecto-sp9_F_contig9557:4258..45401622931040.6806805-UTR-Ecto-sp9_F_contig9557:4258..4540Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9557 4259..4540 +
1692279004.83027-UTR-Ecto-sp9_F_contig9557:4258..45401692279004.83027-UTR-Ecto-sp9_F_contig9557:4258..4540Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9557 4259..4540 +
1622931040.711713-UTR-Ecto-sp9_F_contig9557:5017..50431622931040.711713-UTR-Ecto-sp9_F_contig9557:5017..5043Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9557 5018..5043 +
1692279004.8522916-UTR-Ecto-sp9_F_contig9557:5017..50431692279004.8522916-UTR-Ecto-sp9_F_contig9557:5017..5043Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9557 5018..5043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.694575-CDS-Ecto-sp9_F_contig9557:4540..50171622931040.694575-CDS-Ecto-sp9_F_contig9557:4540..5017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9557 4541..5017 +
1692279004.8405879-CDS-Ecto-sp9_F_contig9557:4540..50171692279004.8405879-CDS-Ecto-sp9_F_contig9557:4540..5017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9557 4541..5017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9557.17675.1

>prot_Ecto-sp9_F_contig9557.17675.1 ID=prot_Ecto-sp9_F_contig9557.17675.1|Name=mRNA_Ecto-sp9_F_contig9557.17675.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=159bp
MRLSYRAFKRRSLSMDELLLLSTTTATAVINFSLLPSIREREYIAMNHTK
GHTKTPEPWHGIAVRFEHNKTDKKAATTLPSRSSPESSTRRIAHTLDSLP
HILHRPDGHFRLLLIIPDERWTHKHTRFSLVSRLSAVDAKKKKAHTHIAF
DCALRCSS*
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mRNA from alignment at Ecto-sp9_F_contig9557:4259..5043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9557.17675.1 ID=mRNA_Ecto-sp9_F_contig9557.17675.1|Name=mRNA_Ecto-sp9_F_contig9557.17675.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=785bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9557:4259..5043+ (Ectocarpus species9 EcSCA_722f female)
ACAATAATAGCCAAGGCATGAAACGAAGAACAAAACGCAGCAGGATAACT
CGCGAGAGGGGGAGCGATCCGGTTGGCAGGGTCTCAAATGGCGGAGGGGA
CTTGTCAACGACGCCTTGCTACGCACACACCAGTATTTTCTTTCATCCAT
CCACTGATTCACCGTCGTCGCTCGCAGTTTCTCGCTCTATACATGCCATA
TATATAGCCGTCGGGCCCAGTCCTCTAAACCGGTTGACCCATCTTACGCG
TGAATCGCGGCCAACCAACCAACCAACCAACCATGCGCCTATCGTACCGC
GCGTTCAAGAGGCGAAGTCTCAGCATGGATGAGCTACTCCTGCTGTCTAC
TACTACTGCTACTGCTGTCATCAATTTCTCTCTGCTGCCTAGCATACGCG
AACGGGAATACATCGCGATGAACCACACGAAAGGGCACACAAAAACGCCA
GAGCCATGGCATGGTATTGCTGTTCGATTCGAACATAATAAAACAGACAA
GAAGGCAGCGACTACGCTACCCTCGCGGAGCTCGCCGGAGAGCTCTACAC
GGCGGATCGCCCACACACTCGATTCTCTGCCGCACATTCTACATCGGCCC
GACGGTCACTTCCGACTCCTGCTGATAATTCCGGACGAAAGATGGACACA
CAAACACACACGTTTTTCATTGGTCAGCCGGTTGAGCGCGGTCGATGCCA
AGAAGAAAAAAGCACACACACACATCGCGTTTGATTGTGCGCTTCGGTGC
TCGTCTTAAAAATAGCGCGACACCATAAACTTAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9557:4259..5043+

>mRNA_Ecto-sp9_F_contig9557.17675.1 ID=mRNA_Ecto-sp9_F_contig9557.17675.1|Name=mRNA_Ecto-sp9_F_contig9557.17675.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9557:4259..5043+ (Ectocarpus species9 EcSCA_722f female)
ATGCGCCTATCGTACCGCGCGTTCAAGAGGCGAAGTCTCAGCATGGATGA
GCTACTCCTGCTGTCTACTACTACTGCTACTGCTGTCATCAATTTCTCTC
TGCTGCCTAGCATACGCGAACGGGAATACATCGCGATGAACCACACGAAA
GGGCACACAAAAACGCCAGAGCCATGGCATGGTATTGCTGTTCGATTCGA
ACATAATAAAACAGACAAGAAGGCAGCGACTACGCTACCCTCGCGGAGCT
CGCCGGAGAGCTCTACACGGCGGATCGCCCACACACTCGATTCTCTGCCG
CACATTCTACATCGGCCCGACGGTCACTTCCGACTCCTGCTGATAATTCC
GGACGAAAGATGGACACACAAACACACACGTTTTTCATTGGTCAGCCGGT
TGAGCGCGGTCGATGCCAAGAAGAAAAAAGCACACACACACATCGCGTTT
GATTGTGCGCTTCGGTGCTCGTCTTAAATGCGCCTATCGTACCGCGCGTT
CAAGAGGCGAAGTCTCAGCATGGATGAGCTACTCCTGCTGTCTACTACTA
CTGCTACTGCTGTCATCAATTTCTCTCTGCTGCCTAGCATACGCGAACGG
GAATACATCGCGATGAACCACACGAAAGGGCACACAAAAACGCCAGAGCC
ATGGCATGGTATTGCTGTTCGATTCGAACATAATAAAACAGACAAGAAGG
CAGCGACTACGCTACCCTCGCGGAGCTCGCCGGAGAGCTCTACACGGCGG
ATCGCCCACACACTCGATTCTCTGCCGCACATTCTACATCGGCCCGACGG
TCACTTCCGACTCCTGCTGATAATTCCGGACGAAAGATGGACACACAAAC
ACACACGTTTTTCATTGGTCAGCCGGTTGAGCGCGGTCGATGCCAAGAAG
AAAAAAGCACACACACACATCGCGTTTGATTGTGCGCTTCGGTGCTCGTC
TTAA
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