mRNA_Ecto-sp9_F_contig955.17671.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig955.17671.1
Unique NamemRNA_Ecto-sp9_F_contig955.17671.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A317HAF4_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.680e-9
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   91 RWRVFNEQAKRRNIAVSISFDDYISIVHTA-CSYCGQFTYEGYSGVDRVQNAGTYQSDNVVACCKTCN 291
            RW  F  +AK+R IA+ +S++++I+IV+ A C YCG       S +DR  ++  Y  DNVV CC  CN
Sbjct:   46 RWNFFKSKAKKRGIALELSYEEWIAIVNGAPCHYCGHEITSKGSSLDRKNSSLGYTKDNVVPCCVPCN 113          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UB66_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 3.510e-9
Identity = 34/93 (36.56%), Postives = 46/93 (49.46%), Query Frame = 1
Query:  103 FNEQAKRRNIAVSISFDDYISIVHTACSYCG-----QFTYEG------YSGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEFLGKVEHIA 348
            +  QAK R +  S+S   +  +V  +C YCG         +G      YSG+DRV     Y   N V CCKTCN+ KG + +EEF   +  IA
Sbjct:   89 YRHQAKTRGLGFSLSKKHFRELVTNSCHYCGIPPSNSVKKKGSNGEFVYSGIDRVATKYGYSVKNCVPCCKTCNWAKGTMNLEEFKSWITRIA 181          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNC2_ACACA)

HSP 1 Score: 59.3 bits (142), Expect = 5.230e-9
Identity = 27/81 (33.33%), Postives = 44/81 (54.32%), Query Frame = 1
Query:  103 FNEQAKRRNIAVSISFDDYISIVHTACSYCGQFTYEGYSGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEFLGKVEHI 345
            + ++A +RN+   +    +  ++ + C  CG        GVDR  N   Y  +N + CCKTCNF+KG LP+ + L +V+ I
Sbjct:   19 YMKKAAKRNLVFELERSHFDELLGSPCYLCG---VRSAGGVDRTDNTVGYTVENAMPCCKTCNFLKGTLPLCDVLTRVDEI 96          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.320e-8
Identity = 25/88 (28.41%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   94 WRVFNEQAKRRNIAVSISFDDYISIVHTACSYCGQFTYEGY-----------SGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEF 324
            ++ + + AK R ++  ++ ++++S++  +C YC +   E +           +G+DR+ ++  Y ++NVV CCK CN+ K  + VEEF
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAKKQMSVEEF 170          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 9.390e-8
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   91 RWRVFNEQAKRRNIAVSISFDDYISIVHTACSYCGQFTYEGY-SGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEFLGKVEHI 345
            R++ +   A ++ I   +S D+  ++   +C YC      G+ +G+DR  +   Y  DNVV CCK CN++KG L   +FL  V+HI
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSLGHNDFLQIVDHI 359          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9F6T2_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-7
Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  112 QAKRRNIAVSISFDDYISIVHTACSYCG---------QFTYEGY--SGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEFLGKVEHI 345
            ++K+R I  ++SFD ++ +    C YCG         +     Y  +G+DRV N   Y  DNVV CCK CN+ K  + +++F   +  +
Sbjct:  204 RSKKRKINFTLSFDTFVELTSQHCFYCGTKPSNITVNEAGNGDYVSNGIDRVDNNKGYIEDNVVPCCKVCNYAKNTMSLDQFYSWISRV 292          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5RY38_9CAUD)

HSP 1 Score: 52.8 bits (125), Expect = 9.720e-6
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 1
Query:  121 RRNIAVSISFDDYISIVHTACSYCG-----------------QFTYEG----YSGVDRVQNAGTYQSDNVVACCKTCNFMKGPLPVEEFLGKVEHIA 348
            RR     ++F+D++ +    C YC                  +F+ E     Y+G+DR+ ++  +  +N+V CCK CNFMKG L   EF   +E+IA
Sbjct:   83 RRYSDGDLTFEDFLILSQQKCYYCNCKPSSNYNAFSKRKNALKFSIENGNFQYNGLDRLDSSLLHNKNNMVPCCKICNFMKGILTPTEFKIYIENIA 179          
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-5
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = -2
Query:  252 CSLAICSTFPKNSSTGSGPFIKLQVLQQATTLSLW 356
            CSLA+  TFPKN  T   PFIKLQVLQ+ATTLS W
Sbjct:   70 CSLAMSLTFPKNFFTERDPFIKLQVLQEATTLSFW 104          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig955.17671.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized1.680e-942.65protein n=1 Tax=Bacteroidetes bacterium TaxID=1898... [more]
Uncharacterized3.510e-936.56protein n=1 Tax=marine sediment metagenome TaxID=4... [more]
Uncharacterized5.230e-933.33protein n=1 Tax=Acanthamoeba castellanii str. Neff... [more]
Uncharacterized5.320e-828.41protein n=1 Tax=Candidatus Nomurabacteria bacteriu... [more]
Uncharacterized9.390e-834.88protein (Fragment) n=1 Tax=viral metagenome TaxID=... [more]
Uncharacterized1.420e-731.46protein n=1 Tax=marine sediment metagenome TaxID=4... [more]
Uncharacterized9.720e-630.93protein n=1 Tax=uncultured Caudovirales phage TaxI... [more]
Uncharacterized1.470e-571.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig955contigEcto-sp9_F_contig955:5200..5574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score64.7
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog10506.Q98540_PBCV1
EggNOG OGs4QC9Q@10239,4R0EV@35237
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.0557945-CDS-Ecto-sp9_F_contig955:5199..55741622931040.0557945-CDS-Ecto-sp9_F_contig955:5199..5574Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig955 5200..5574 -
1692279004.4987726-CDS-Ecto-sp9_F_contig955:5199..55741692279004.4987726-CDS-Ecto-sp9_F_contig955:5199..5574Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig955 5200..5574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig955.17671.1prot_Ecto-sp9_F_contig955.17671.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig955 5200..5574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig955.17671.1

>prot_Ecto-sp9_F_contig955.17671.1 ID=prot_Ecto-sp9_F_contig955.17671.1|Name=mRNA_Ecto-sp9_F_contig955.17671.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
RRIRALQKKRYRRSLAYWRHLKARKVDVVYRWRVFNEQAKRRNIAVSISF
DDYISIVHTACSYCGQFTYEGYSGVDRVQNAGTYQSDNVVACCKTCNFMK
GPLPVEEFLGKVEHIARLQALRTK*
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mRNA from alignment at Ecto-sp9_F_contig955:5200..5574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig955.17671.1 ID=mRNA_Ecto-sp9_F_contig955.17671.1|Name=mRNA_Ecto-sp9_F_contig955.17671.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp9_F_contig955:5200..5574- (Ectocarpus species9 EcSCA_722f female)
CGCCGCATCAGAGCTCTGCAAAAGAAGCGATACCGAAGATCCCTCGCTTA CTGGAGGCACTTGAAAGCGAGGAAAGTTGATGTGGTCTACAGGTGGCGTG TGTTTAACGAGCAAGCTAAGCGACGAAACATTGCGGTATCCATTAGTTTT GACGACTACATCAGCATTGTGCACACGGCGTGCTCTTACTGTGGCCAGTT TACTTACGAGGGGTACTCAGGAGTGGACCGCGTGCAGAACGCGGGTACGT ACCAAAGTGACAACGTTGTGGCCTGTTGCAAGACCTGCAACTTTATGAAA GGGCCACTGCCGGTCGAGGAGTTCTTGGGGAAGGTCGAGCATATTGCAAG ACTGCAGGCTCTACGGACTAAATAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig955:5200..5574-

>mRNA_Ecto-sp9_F_contig955.17671.1 ID=mRNA_Ecto-sp9_F_contig955.17671.1|Name=mRNA_Ecto-sp9_F_contig955.17671.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig955:5200..5574- (Ectocarpus species9 EcSCA_722f female)
CGCCGCATCAGAGCTCTGCAAAAGAAGCGATACCGAAGATCCCTCGCTTA
CTGGAGGCACTTGAAAGCGAGGAAAGTTGATGTGGTCTACAGGTGGCGTG
TGTTTAACGAGCAAGCTAAGCGACGAAACATTGCGGTATCCATTAGTTTT
GACGACTACATCAGCATTGTGCACACGGCGTGCTCTTACTGTGGCCAGTT
TACTTACGAGGGGTACTCAGGAGTGGACCGCGTGCAGAACGCGGGTACGT
ACCAAAGTGACAACGTTGTGGCCTGTTGCAAGACCTGCAACTTTATGAAA
GGGCCACTGCCGGTCGAGGAGTTCTTGGGGAAGGTCGAGCATATTGCAAG
ACTGCAGGCTCTACGGACTAAATAACGCCGCATCAGAGCTCTGCAAAAGA
AGCGATACCGAAGATCCCTCGCTTACTGGAGGCACTTGAAAGCGAGGAAA
GTTGATGTGGTCTACAGGTGGCGTGTGTTTAACGAGCAAGCTAAGCGACG
AAACATTGCGGTATCCATTAGTTTTGACGACTACATCAGCATTGTGCACA
CGGCGTGCTCTTACTGTGGCCAGTTTACTTACGAGGGGTACTCAGGAGTG
GACCGCGTGCAGAACGCGGGTACGTACCAAAGTGACAACGTTGTGGCCTG
TTGCAAGACCTGCAACTTTATGAAAGGGCCACTGCCGGTCGAGGAGTTCT
TGGGGAAGGTCGAGCATATTGCAAGACTGCAGGCTCTACGGACTAAATAA
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