prot_Ecto-sp9_F_contig9545.17669.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9545.17669.1
Unique Name	prot_Ecto-sp9_F_contig9545.17669.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	227

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Match: DM13 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT2_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 1.090e-111
Identity = 175/181 (96.69%), Postives = 179/181 (98.90%), Query Frame = 0

Query:   41 PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVELFDQVALWCGEAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSIIDDALVTTYSLRY 221
            PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVIN+ACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPL+EDFE ELFDQVALWCG AQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSI+DDALVTTYSLR+
Sbjct:   24 PDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINDACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLDEDFEAELFDQVALWCGGAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMVQIIGSGSIVDDALVTTYSLRF 204

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BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF23_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.080e-67
Identity = 125/167 (74.85%), Postives = 131/167 (78.44%), Query Frame = 0

Query:    1 MEGSKTCCGYPRKRVLCCAVPTVLAIIA---------GVIVLVVLLLRSPDDIETQERTESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEACDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVELFDQVALWC 158
            MEGSKTCCGYPRKRVL C VP VLAIIA         G          SPD IET ERTES  TTAEELSILKTATLSSSEVSGTV LLSVAA NSSF+ALNDFVINEACD+AEIRLQE GFTSGTTSGV+V+PLTADTASAVELDFTEPL+E+F   L DQV   C
Sbjct:    1 MEGSKTCCGYPRKRVLFCTVPAVLAIIASHHCQGDRAG----------SPDFIETPERTESDSTTAEELSILKTATLSSSEVSGTVPLLSVAAGNSSFVALNDFVINEACDEAEIRLQEKGFTSGTTSGVIVMPLTADTASAVELDFTEPLDENFAAVLHDQVRALC 157

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9545.17669.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
DM13	1.090e-111	96.69	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Uncharacterized	3.080e-67	74.85	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..226
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 15..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..14
None	No IPR available	TMHMM	TMhelix		coord: 16..38

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9545	contig	Ecto-sp9_F_contig9545:3430..4990 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9545.17669.1	mRNA_Ecto-sp9_F_contig9545.17669.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9545 3430..4990 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9545.17669.1 ID=prot_Ecto-sp9_F_contig9545.17669.1|Name=mRNA_Ecto-sp9_F_contig9545.17669.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=227bp
MEGSKTCCGYPRKRVLCCAVPTVLAIIAGVIVLVVLLLRSPDDIETQERT
ESGPTTAEELSILKTATLSSSEVSGTVSLLSVAADNSSFLALNDFVINEA
CDDAEIRLQEAGFTSGTTSGVVVVPLTADTASAVELDFTEPLNEDFEVEL
FDQVALWCGEAQLGDAVDLVTPTTVGDGGPLLLREAVMSGTSSYTVEGMV
QIIGSGSIIDDALVTTYSLRYVCLSY*