mRNA_Ecto-sp9_F_contig9541.17667.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9541.17667.1
Unique NamemRNA_Ecto-sp9_F_contig9541.17667.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Match: DUF4168 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4P7_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 7.640e-133
Identity = 196/201 (97.51%), Postives = 199/201 (99.00%), Query Frame = 1 
Query:   19 AGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPLPDPVVVGAEGDAAAPTALRSKAEQRRIVNRGQQVKTPRAGPPPDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLEKRGRA 621
            AGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPLPDPVVVGAEGDAAAPT+ RSKAE+RRIVNRGQQVKTPRAGPPPDKKMLFAKSLREIEALR RQRRRLMKEVGS+DLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLEKRGRA
Sbjct:    2 AGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPLPDPVVVGAEGDAAAPTSPRSKAERRRIVNRGQQVKTPRAGPPPDKKMLFAKSLREIEALRSRQRRRLMKEVGSNDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLEKRGRA 202
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BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ45_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.670e-39
Identity = 86/195 (44.10%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:   19 AGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPLPDPVVVGAEGDAAAPTALRSKAEQRRIVNRGQQVKTPRAGPPPDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKL 603
            AG II S  L+ +R+NQL+ ++ + K L  RV  QAYLYRV A+L G K  P+ D +   A+G        RS        +    +        P K  LFAKSLRE+E+LR  QRRRLM+ +  D+LP GLC   M R++SP +R+ C+ FP+ A ++V+ANGL  EEFNRL  R++ N++YR++VLR V KL
Sbjct:  119 AGRIITSCDLSISRFNQLTKLVAQDKQLASRVNRQAYLYRVGAELHGDKFLPVED-LREAAKGG-------RSGRGNGEFSDGANGLSAMALLGQPKKLRLFAKSLREVESLRMEQRRRLMETLEVDELPQGLCMTRMARVSSPIVRRACEQFPLQAAAVVRANGLRTEEFNRLLQRAQKNLVYRYRVLRLVHKL 305
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BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-13
Identity = 54/196 (27.55%), Postives = 104/196 (53.06%), Query Frame = 1 
Query:   43 GLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNADLRGTKIRPL--PDPVVVGAEGDAAAPTALRSKAEQRRIVNRGQQVKTPRA-----GPPPDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPS-GLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRKLE 606
            GL+ + +N +S  +    DL+ +V HQAYLYR+ + +  TK  P+  P   + G+    ++ T  RS  +   +    +Q   PR      G   D   LFA   ++++ L+ +QR +L+  +  D+ P   +C   +    S  +R  C++FP  AE++V++ G++   F +L A+  ++ ++RW++ R +R+L+
Sbjct:  138 GLSVSEFNTISRTVAGSPDLKQKVLHQAYLYRLASKI-DTKRDPIIAPSQTIGGSSDSTSSSTITRSPPDDTLLKAYNKQ--NPRGSTALDGATADSIKLFASLAKQVQHLQQQQRAQLVSTLKIDEFPDLPICDDRVLPFMSQEVRDLCRAFPAKAEALVRSYGVDYSSFEKLLAKVDSDPIFRWRLKRQMRQLD 330
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BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Match: DUF4168 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D076_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.570e-13
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  304 PDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCV 594
            P +  LFAKSLREIEALR  Q   L +E   D LP G   P +  I + +++  C  FPV AE I + NG E  EFN L  ++  N  +RW+V R +
Sbjct:  276 PHRLALFAKSLREIEALRAEQNHLLKQEFHVDTLPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKAEKNPFFRWRVERLM 372
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BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRM5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.120e-12
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  304 PDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPSGLCRPEMGRIASPRIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRC 591
            P +  LFAKSLREIEALR  Q   L +E   D LP G   P +  I + +++  C  FPV AE I + NG E  EFN L  ++  N  +RW+   C
Sbjct:  205 PHRLALFAKSLREIEALRAEQNHLLKQEFHVDALPPGATDPSLFPILNTKVQHLCLRFPVQAEEIAQKNGFETAEFNSLLLKTEKNPFFRWRRQAC 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9541.17667.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
DUF41687.640e-13397.51domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized4.670e-3944.10protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.010e-1327.55protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
DUF41686.570e-1343.30domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Uncharacterized4.120e-1242.71protein n=1 Tax=Nannochloropsis gaditana TaxID=725... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9541contigEcto-sp9_F_contig9541:138..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue9.7e-104
Seed eggNOG ortholog2880.D7G4P7
EggNOG free text desc.Domain of unknown function (DUF4168)
EggNOG OGs2E26C@1,2S9ES@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size624
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9541.17667.1prot_Ecto-sp9_F_contig9541.17667.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9541 138..2883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.2932343-CDS-Ecto-sp9_F_contig9541:137..4131622931039.2932343-CDS-Ecto-sp9_F_contig9541:137..413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 138..413 +
1692279004.20305-CDS-Ecto-sp9_F_contig9541:137..4131692279004.20305-CDS-Ecto-sp9_F_contig9541:137..413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 138..413 +
1622931039.3114603-CDS-Ecto-sp9_F_contig9541:839..9471622931039.3114603-CDS-Ecto-sp9_F_contig9541:839..947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 840..947 +
1692279004.213825-CDS-Ecto-sp9_F_contig9541:839..9471692279004.213825-CDS-Ecto-sp9_F_contig9541:839..947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 840..947 +
1622931039.3320684-CDS-Ecto-sp9_F_contig9541:1574..17261622931039.3320684-CDS-Ecto-sp9_F_contig9541:1574..1726Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 1575..1726 +
1692279004.2226567-CDS-Ecto-sp9_F_contig9541:1574..17261692279004.2226567-CDS-Ecto-sp9_F_contig9541:1574..1726Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 1575..1726 +
1622931039.3506343-CDS-Ecto-sp9_F_contig9541:2795..28831622931039.3506343-CDS-Ecto-sp9_F_contig9541:2795..2883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 2796..2883 +
1692279004.2324402-CDS-Ecto-sp9_F_contig9541:2795..28831692279004.2324402-CDS-Ecto-sp9_F_contig9541:2795..2883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9541 2796..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9541.17667.1

>prot_Ecto-sp9_F_contig9541.17667.1 ID=prot_Ecto-sp9_F_contig9541.17667.1|Name=mRNA_Ecto-sp9_F_contig9541.17667.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp
MNNITKAGNIIRSNGLTTNRYNQLSHILGKRKDLRGRVQHQAYLYRVNAD
LRGTKIRPLPDPVVVGAEGDAAAPTALRSKAEQRRIVNRGQQVKTPRAGP
PPDKKMLFAKSLREIEALRFRQRRRLMKEVGSDDLPSGLCRPEMGRIASP
RIRKECQSFPVAAESIVKANGLEPEEFNRLSARSRANMLYRWQVLRCVRK
LEKRGRA*
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mRNA from alignment at Ecto-sp9_F_contig9541:138..2883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9541.17667.1 ID=mRNA_Ecto-sp9_F_contig9541.17667.1|Name=mRNA_Ecto-sp9_F_contig9541.17667.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2746bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9541:138..2883+ (Ectocarpus species9 EcSCA_722f female)
ATGAACAACATCACAAAGGCGGGCAACATCATCCGGTCGAACGGGCTGAC
CACGAACCGCTACAATCAGCTGAGCCACATCCTGGGCAAGCGCAAGGACC
TGCGGGGCCGCGTGCAGCACCAGGCCTACCTCTACCGCGTCAACGCCGAC
CTCCGCGGCACCAAGATTAGGCCGCTCCCGGACCCCGTAGTGGTCGGAGC
CGAGGGTGATGCTGCTGCTCCTACTGCTCTTCGCAGCAAGGCCGAGCAGA
GGAGGATCGTCAACAGAGGCCAGCAGGTGATGATGATCATGATGATGATG
GTGTCGTGAGCTTGCTCGTTTCGGTTCGCGCGCAAGTAAGCGCTACTGTA
GACGGCACTCAACACAGGCCTACCTCTACGTGTTGGTGGTGGTGGTGATG
ATGATGATGACGATGATGGGGGTGCGCCCGCCTAAGTAAGTATCTCGTCG
CACCGCCACCGCCGACCGGAGGAGGGTTGTCAACAGAGCCCAGCAGGTGA
TGATGATGACGGCGGGGCGTCGCGAGCTTGCTCGTTTTGGTTTGCGCTGT
GTGTGAGGCACTTCTTTCGTGGCCATGGTTTAGCTTCCGCTGCTATTGCA
GGCATTGCTGTTGTTTGGTTAGTCTGTGCTTTTGGCGGCGGTGCTCTTGA
ATGACGGCGTGCTTTGCGGTTCATGCTTTTGGTTGTTAATTGGATGAATG
AGGTGAAGACGCCTCGGGCCGGTCCTCCCCCCGACAAGAAGATGCTGTTC
GCCAAGAGCCTCAGAGAGATCGAAGCTTTGAGGTTCAGGCAGAGGAGGCG
CCTGATGAAGGTGAGACGTCGTGCCGTCGTACAGTATCGCTGTTCTCCTC
CTTTCAGCCTCGGTGTTTGTCAACCGAACAGTGTCACCAATCTATTTGTC
TCAATGGAGTAAAAGTTTAGAGTAGTTTGGAGTTCTGATCAGATTTTACT
GGTACGGTTTTGGGACCGTTTGAACCGTGCTATGCGTAACAAGTGGTATG
ATTGGCTCTTGAATGCCGCCATTTTGACGTGTGGCGCAGTCGTCAGAGAG
GTTGATTAGTGGGAAATCGAAACATTGGAAAGCCAAGGCTTTCTTCCTTT
CTGGCGGTGCATGGGGCGTGCGCCTTGCTCTTGTCACAGCTCGTGACCTT
CTGCCGTTACCTTTGCACTTGTGCTTTTGCTTTTGCTGGTGCTGGTGCTG
GTGCTTTTGCTGGTGCTTTTGCTGGTGCTTTTGCTGGTGCTTTTGCTGGT
GCTTTTGCTGGTGCTTTTGCTGGTGTTGCTGCTTTTGCTGCTGATGCTGG
TGCTGCTGCTGCTGGTGCTTCTTTCGCTGCTTCCGCTGCTTTCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGTTGGTACTGCTGTTTCT
CCCGGTACTGCAACTAACCAACGCACCGCCGTTTCAGGAGGTGGGGAGCG
ACGACCTGCCTTCGGGGCTGTGCCGTCCTGAGATGGGCCGCATCGCGTCG
CCGCGGATCCGCAAGGAGTGCCAAAGCTTTCCCGTGGCGGCGGAGAGCAT
CGTCAAGGCTAACGGGCTCGAACCAGAGGAGTTCAACAGGTGACTCCAAC
TGACTCGATCCACTACCTGACTCAACAGCTATCTGACTCGACTGCTAGCT
GCTGGTTGTCTATCCTGGGCCGGGTTGCCCTGTCTATGCAGGGCGGTACG
ATAGCGGTGTAGGCCCTTGTTTTGGTAGGTTTGCAGGGATGCTGTCTTGC
ATGGAAATGCGGCCGACGTTTCTTGCTTGTATCACTTTGGAGATGATGCT
GTCATGAAAGCGTCGTTGGCGCATGTGAGGTCGGAACACGTTACCCCGAA
CGGGCGCCCATCGCCGACCTATGGCAGTACCATGCTGGAGCAGTTGCGAC
GAAGTTCGGAAATTTGGACGAGGTGGAGTCGGGGCGTTGTCGGGAAAAGT
CGGGTACGGCCAAGCGGAGGGTGGTCAGCGTTTTAGATCCTTACGGTAAG
GTACTTAGGCACCTTACGGCAAGGTACCGCTCGTGTCTAGCCGAAACGCC
TTGTTGAGAATGCCAGTGTAATGAGTCTTAGACCCGAAAGATCGCCAAAG
GTCTGCAGTGTGTTTTATGTTTGTCCTAGCATGTCCTTGAGTCGAGTCAG
GAAATACTATCCGGCACTAGATCCTCAAGCGATTGAGTGCTTGTTAGACC
CTGTAGACTTTGGCGTATTGTGTGCGTGCACACGACACTTGGTGGTTTGC
TCGGCGTTTCGCGCGGCGTTCTGGTGGTTTATCGTTCTGGCGGCAGGGGA
ATCCAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTTTGCT
CTCAACGAAGAAGGCTCAGCCGTCGTGATTCATCCTTCGGGACTACAGCG
GGCTGGAAATTTCTTGCCGTCCGCCCTGGTTCCCGCCCAGTACCGGGGGT
GATATGATGTCATGTTTCGTGATATGATGTAGTGTCATGTCATGGTGATG
TTATGTGATGCGATGTCATGTGACGTCATGTCATGCCACGTAATGCGATG
CGATGCGATGTGATGTGATGTGATATCGTTTGATGCGGTATCACGCCATG
TGATGTCATGTCACGTGAATCTGATGTCATGTGATGCGATGTGGTGTCTT
TGACGCAGGCTTTCGGCGAGGAGCCGAGCCAACATGTTGTACCGGTGGCA
GGTCCTCCGCTGCGTGCGCAAGCTCGAGAAGCGAGGCCGTGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9541:138..2883+

>mRNA_Ecto-sp9_F_contig9541.17667.1 ID=mRNA_Ecto-sp9_F_contig9541.17667.1|Name=mRNA_Ecto-sp9_F_contig9541.17667.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9541:138..2883+ (Ectocarpus species9 EcSCA_722f female)
ATGAACAACATCACAAAGGCGGGCAACATCATCCGGTCGAACGGGCTGAC
CACGAACCGCTACAATCAGCTGAGCCACATCCTGGGCAAGCGCAAGGACC
TGCGGGGCCGCGTGCAGCACCAGGCCTACCTCTACCGCGTCAACGCCGAC
CTCCGCGGCACCAAGATTAGGCCGCTCCCGGACCCCGTAGTGGTCGGAGC
CGAGGGTGATGCTGCTGCTCCTACTGCTCTTCGCAGCAAGGCCGAGCAGA
GGAGGATCGTCAACAGAGGCCAGCAGATGAACAACATCACAAAGGCGGGC
AACATCATCCGGTCGAACGGGCTGACCACGAACCGCTACAATCAGCTGAG
CCACATCCTGGGCAAGCGCAAGGACCTGCGGGGCCGCGTGCAGCACCAGG
CCTACCTCTACCGCGTCAACGCCGACCTCCGCGGCACCAAGATTAGGCCG
CTCCCGGACCCCGTAGTGGTCGGAGCCGAGGGTGATGCTGCTGCTCCTAC
TGCTCTTCGCAGCAAGGCCGAGCAGAGGAGGATCGTCAACAGAGGCCAGC
AGGTGAAGACGCCTCGGGCCGGTCCTCCCCCCGACAAGAAGATGCTGTTC
GCCAAGAGCCTCAGAGAGATCGAAGCTTTGAGGTTCAGGCAGAGGAGGCG
CCTGATGAAGGTGAAGACGCCTCGGGCCGGTCCTCCCCCCGACAAGAAGA
TGCTGTTCGCCAAGAGCCTCAGAGAGATCGAAGCTTTGAGGTTCAGGCAG
AGGAGGCGCCTGATGAAGGAGGTGGGGAGCGACGACCTGCCTTCGGGGCT
GTGCCGTCCTGAGATGGGCCGCATCGCGTCGCCGCGGATCCGCAAGGAGT
GCCAAAGCTTTCCCGTGGCGGCGGAGAGCATCGTCAAGGCTAACGGGCTC
GAACCAGAGGAGTTCAACAGGAGGTGGGGAGCGACGACCTGCCTTCGGGG
CTGTGCCGTCCTGAGATGGGCCGCATCGCGTCGCCGCGGATCCGCAAGGA
GTGCCAAAGCTTTCCCGTGGCGGCGGAGAGCATCGTCAAGGCTAACGGGC
TCGAACCAGAGGAGTTCAACAGGCTTTCGGCGAGGAGCCGAGCCAACATG
TTGTACCGGTGGCAGGTCCTCCGCTGCGTGCGCAAGCTCGAGAAGCGAGG
CCGTGCGTAAGCTTTCGGCGAGGAGCCGAGCCAACATGTTGTACCGGTGG
CAGGTCCTCCGCTGCGTGCGCAAGCTCGAGAAGCGAGGCCGTGCGTAA
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