mRNA_Ecto-sp9_F_contig9537.17662.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9537.17662.1
Unique NamemRNA_Ecto-sp9_F_contig9537.17662.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9537.17662.1 vs.
Match: DUF908 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.350e-46
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 GQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQ 237
            GQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQ
Sbjct:   13 GQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQ 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9537.17662.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
DUF9085.350e-46100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9537contigEcto-sp9_F_contig9537:1993..3938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size239
Cds size237
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9537.17662.1prot_Ecto-sp9_F_contig9537.17662.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9537 1993..3938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.254783-CDS-Ecto-sp9_F_contig9537:1992..20371622931038.254783-CDS-Ecto-sp9_F_contig9537:1992..2037Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 1993..2037 +
1692279003.7086368-CDS-Ecto-sp9_F_contig9537:1992..20371692279003.7086368-CDS-Ecto-sp9_F_contig9537:1992..2037Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 1993..2037 +
1622931038.2694037-CDS-Ecto-sp9_F_contig9537:2963..30641622931038.2694037-CDS-Ecto-sp9_F_contig9537:2963..3064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 2964..3064 +
1692279003.7227468-CDS-Ecto-sp9_F_contig9537:2963..30641692279003.7227468-CDS-Ecto-sp9_F_contig9537:2963..3064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 2964..3064 +
1622931038.2846024-CDS-Ecto-sp9_F_contig9537:3847..39381622931038.2846024-CDS-Ecto-sp9_F_contig9537:3847..3938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 3848..3938 +
1692279003.7347016-CDS-Ecto-sp9_F_contig9537:3847..39381692279003.7347016-CDS-Ecto-sp9_F_contig9537:3847..3938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9537 3848..3938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9537.17662.1

>prot_Ecto-sp9_F_contig9537.17662.1 ID=prot_Ecto-sp9_F_contig9537.17662.1|Name=mRNA_Ecto-sp9_F_contig9537.17662.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
GQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWC
DVLDRMDETLETNMLRHPSLLLIQPADHQ
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mRNA from alignment at Ecto-sp9_F_contig9537:1993..3938+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9537.17662.1 ID=mRNA_Ecto-sp9_F_contig9537.17662.1|Name=mRNA_Ecto-sp9_F_contig9537.17662.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1946bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9537:1993..3938+ (Ectocarpus species9 EcSCA_722f female)
GGCCAACCCGAACCTCGCCTCTCTAGGGAACTGGAGCCCTTGAAGGTAGG
GCATGCTCGCCACGTCCTACTACTATTGTATTCAAAATGTTAGTGTTGCT
GCCTCAATCGCTTGTGAACTACCGCTGCTGCTACTTTTACTACGGCTGCT
GCTGCCACTGCTACCGCTACTAGCACGACAACTGCCCCTTCCCCCCCCCC
CCACACAGGCGAAGTACTTCTGAGCAACGGGGGGCACGGGCAGTAGGGGC
ATCGCTAGACAGCAGTAGTGCCTGTGGTTTGTTACAAACCGTCTGCCGTC
GAACGACGTGCGGGTGTCACTTCGACGAGGACAAGCGCGGAGCGTGTGCA
CGGGCGTCATTGTTGTACATGAAGTAGGATTAACATCTTGGAACGCGGTT
GTTTTTTTGCCTTTGGTGAGACTGCTAATGTTGTTGTGAGCCCGCAGGGG
GAAAAAACGGTAGCACCCGGGCCTTGATGAAGCCTTGAGGCGAAATATTG
GGTTCTCACGGTGGCGCCGCTTTCTGAGCCGGCCATCTGTCAACGGGCAG
ACAGATGCTCACGCCCAGGGTTGTTCCCTAGTGCGAGTCCAAAACCGAAC
TCTGGCTGTGTGCTGTACCGGACTTGGTGGTGCGGTTTCGCACACTTTGG
CCCTGAAAATACCCTTAAAAGTTCTCAAAAGAGTCTCCTCAGTAGCCTCT
CTTTGTTTTGTGCCGCCTCTACCTTCTGCTACATGCCCTCTAGAACCCAT
CCCCTCTCCGAAGTGATGTGTCCGCGATCGAGATATCCGCGTGTATTTTC
GTTTCGCCCAGCGCTGAGACAGAAAAGACGCTAACCTATCTTAGACTCTT
TTCTTAGATAGAGATAGATTCCCTGGGTCACATTAGGACAATAAAAATTA
AAACATTAGTGGAAATCGCGCATTGATTGTTGTTTCTGTGTGATGCTCGC
GCGAACCGACATTATTTCCAGCGCGCCATCCTCGAAGCCAAAACCGATGC
GGAGTTGATCGCCGCGTTGAAGCTGGTGAAGGGGGAGGACGAATGGGAGG
AGCAGCCAGACCTCTACGACTGGTGAGTCGCGCATCGGTTGGCGGTGGTG
GTGGTGGTGGTGATAGTGCACCCGCATGGTAGGTGATGTGCGGGGTCCCA
GAGAGAGGGGTCCCGGAGACAATGGAAGCTTTTTTTGGACGATGCCGGAG
TGGGTGGTGTTTGTGTTTGCGGTGGAGTTCTCTCCTGATTTATGGGACTT
CAGGCTTTTTTTTTTTGCGTGGTATGCATACGAATGCATATAGGTGCAAG
GCACGAAGAGAAGGGCCGTGCTGAACGAGTACGCTTGTTGGTATCACCCG
CGCGAAAAATAAAAAGCTCTCTTACGGGAAATATAGCAGAGCCCTTGGGA
CCGTTAAGAATAATCCTCTTTGTTGTAATGGGCCGGTGAACGCAGTCAGT
GCTAACGACCAAGGAAGGCGCATGCGCACTTGCTAGAAAGCGTGCGTTTT
TATTTTTTCTGGTTTCGTTTCCCGCTGAGGCCGATTTTTTTGCAGGTGCT
GCTGCTGCTGCTGCTTGTTTGCTTGGTCGACGCTACATAACTTCATGGAA
GACTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCC
CCCACGCCCCCCCCCCCCCCCCGCGGCGCGCCCCTCGGCCGCAGGCGGCG
CCCGCGNNNNNNNNNNGGCTCTCCTTTCCTCTGCCGGTTTGTCTTTGGCA
CCCCCCCCAAATCCCCTTAAGACTCCCCCCCCCCCCCCCCCCCCCCCCCG
CTAATCCTACTCCTTCTAATGACGGCGCACGAACAACACCTCGGCTGGGT
GTCAGGTGCGATGTGCTGGACCGAATGGACGAGACGCTCGAGACGAACAT
GCTCCGCCACCCGTCTCTGCTACTCATCCAGCCCGCCGACCACCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9537:1993..3938+

>mRNA_Ecto-sp9_F_contig9537.17662.1 ID=mRNA_Ecto-sp9_F_contig9537.17662.1|Name=mRNA_Ecto-sp9_F_contig9537.17662.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9537:1993..3938+ (Ectocarpus species9 EcSCA_722f female)
GGCCAACCCGAACCTCGCCTCTCTAGGGAACTGGAGCCCTTGAAGGGCCA
ACCCGAACCTCGCCTCTCTAGGGAACTGGAGCCCTTGAAGCGCGCCATCC
TCGAAGCCAAAACCGATGCGGAGTTGATCGCCGCGTTGAAGCTGGTGAAG
GGGGAGGACGAATGGGAGGAGCAGCCAGACCTCTACGACTGCGCGCCATC
CTCGAAGCCAAAACCGATGCGGAGTTGATCGCCGCGTTGAAGCTGGTGAA
GGGGGAGGACGAATGGGAGGAGCAGCCAGACCTCTACGACTGGTGCGATG
TGCTGGACCGAATGGACGAGACGCTCGAGACGAACATGCTCCGCCACCCG
TCTCTGCTACTCATCCAGCCCGCCGACCACCAGGTGCGATGTGCTGGACC
GAATGGACGAGACGCTCGAGACGAACATGCTCCGCCACCCGTCTCTGCTA
CTCATCCAGCCCGCCGACCACCAG
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