mRNA_Ecto-sp9_F_contig9534.17661.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9534.17661.1
Unique NamemRNA_Ecto-sp9_F_contig9534.17661.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9534.17661.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9534contigEcto-sp9_F_contig9534:3576..5114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size591
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9534.17661.1prot_Ecto-sp9_F_contig9534.17661.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9534 3613..4980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.1450205-UTR-Ecto-sp9_F_contig9534:3575..36121622931038.1450205-UTR-Ecto-sp9_F_contig9534:3575..3612Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9534 3576..3612 +
1692279003.6487522-UTR-Ecto-sp9_F_contig9534:3575..36121692279003.6487522-UTR-Ecto-sp9_F_contig9534:3575..3612Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9534 3576..3612 +
1622931038.204581-UTR-Ecto-sp9_F_contig9534:4980..51141622931038.204581-UTR-Ecto-sp9_F_contig9534:4980..5114Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9534 4981..5114 +
1692279003.6914697-UTR-Ecto-sp9_F_contig9534:4980..51141692279003.6914697-UTR-Ecto-sp9_F_contig9534:4980..5114Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9534 4981..5114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.1581848-CDS-Ecto-sp9_F_contig9534:3612..37661622931038.1581848-CDS-Ecto-sp9_F_contig9534:3612..3766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 3613..3766 +
1692279003.661324-CDS-Ecto-sp9_F_contig9534:3612..37661692279003.661324-CDS-Ecto-sp9_F_contig9534:3612..3766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 3613..3766 +
1622931038.173682-CDS-Ecto-sp9_F_contig9534:4682..49091622931038.173682-CDS-Ecto-sp9_F_contig9534:4682..4909Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 4683..4909 +
1692279003.6712615-CDS-Ecto-sp9_F_contig9534:4682..49091692279003.6712615-CDS-Ecto-sp9_F_contig9534:4682..4909Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 4683..4909 +
1622931038.1910467-CDS-Ecto-sp9_F_contig9534:4941..49801622931038.1910467-CDS-Ecto-sp9_F_contig9534:4941..4980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 4942..4980 +
1692279003.681562-CDS-Ecto-sp9_F_contig9534:4941..49801692279003.681562-CDS-Ecto-sp9_F_contig9534:4941..4980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9534 4942..4980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9534.17661.1

>prot_Ecto-sp9_F_contig9534.17661.1 ID=prot_Ecto-sp9_F_contig9534.17661.1|Name=mRNA_Ecto-sp9_F_contig9534.17661.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=140bp
MPPTSAGSVGDASSRDVDEIGQWEDYTCQGQFEDLVRSFETVLREWRISD
RDHALLSNEAVAVEGIVSSLTESSGPSTSLPAVSYSRCLEHDGQLFSIQL
VPPPDQRTVTAAAEAPPTTAAPPPTTTRRRIERRPRPVS*
back to top

mRNA from alignment at Ecto-sp9_F_contig9534:3576..5114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9534.17661.1 ID=mRNA_Ecto-sp9_F_contig9534.17661.1|Name=mRNA_Ecto-sp9_F_contig9534.17661.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1539bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9534:3576..5114+ (Ectocarpus species9 EcSCA_722f female)
GTGAGCATATCGGCACGAGCATAGGGTCTCCCAGACGATGCCTCCCACCT
CCGCAGGAAGCGTTGGGGATGCATCCAGCCGCGATGTCGACGAGATCGGA
CAGTGGGAGGACTATACGTGCCAAGGGCAGTTCGAAGACCTTGTCAGGTC
TTTCGAGACGGTGCTGCGAGAATGGAGAATTTCCGACAGAGGTGTGTTCA
CGCGTGCGGGGAATCTACTGTGTGCTACTCTCCCTGCTGCAGCTGCTGTC
GCGGTCGACCAGCAGGCACAGTCGACACCACTGCCGCTATCCGCTAGGCG
TAGACGACCAACGCCATGGAAATGTCTGAGTTTTGATTATCTCTTGCGTC
GGTGGACTCAGTTCACGCTTGGTGCCAAAGTTCAACAATGAACGGGTTCG
AGTGTCGCACCTCCTCGACGGCAGTGTCGTGACCACCTCAGTATGCCCGC
TGCTGTTGTACTTTGTAGTCTATGCACACGAGTTACCGAAAGCACGTTAC
CGCCGACCTCGCCAATTGCCTTGGCCACCTGGGGTATGATCTCCGCGTCG
CATTTGCCCTGTTTCCTTCTAGCTCGGCAGTTGTGTCCACCCTGTTCTAT
GACCATGGCAGTTGTTCCAGGGGATTTTCTCGCAGATAGATGTCGGCCAT
GTACATGCCGTGTCGCGCTCTCTTTGGAGCTTCAACTTCACTGTCATCAT
ACATAAAGGACTTCAGTAGTAGTAGTACCCCCGCCGTTTCCCTCTGTTAC
GTATTGTGCGTGAGCCAAGTATTGCAAATGCTCCTCCTATGCATAGCACT
GAACAGAAACCAGTAGAATCCAACGCAAGCTGTCCTACTCCTCAGGAAAT
ATGTGCATGACACAATTACCGAGACAGCAGTCAGTGCCCAATATGGTGTC
GCAGACTTTACATTTGAGTGTTGAATGAAACTGCAGCTTGGTCCTTCCCG
CAGCAAAAGGAACAAACGCATGCCTGCTGCCGTCGTTTTTGGCTCCCTGT
CGCGCACTACTATTGTCGGGGACTGACTATCCGACGACTTGGCCGGGACA
ACACCGCTCCCGTTCTTTTTCCCTCGCGTGTTCCGGAATGTGACCCGTGC
TGAGAAGACCACGCACTGCTGTCAAACGAAGCTGTTGCTGTTGAGGGCAT
CGTGTCGTCGTTGACGGAGTCCTCCGGGCCGTCGACGTCGCTCCCGGCCG
TGTCCTACTCGCGGTGCCTGGAGCACGATGGTCAGCTCTTCAGCATCCAG
CTGGTGCCCCCGCCCGACCAGCGTACCGTTACCGCTGCCGCTGAGGCTCC
GCCGACAACAGCAGCACCACCTCCAACAACAACAGCAGCCACGGCAGAAA
CCTCCAACAACAACAGCGACGCCGAATCGAACGGCGTCCGCGGCCTGTCA
GCTAGAGGACCGCCGCCTAGACTTCGCGGTGGGGGGGGGCGAGACCACCA
ACACGCCCCTGCACCGCTGGTTCGGGCTCAAGCAGTACGTCCTTGTTCGC
GCCTTCGGCCAGGGCGGGTCTCCCGGCATGGGGGTTGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9534:3576..5114+

>mRNA_Ecto-sp9_F_contig9534.17661.1 ID=mRNA_Ecto-sp9_F_contig9534.17661.1|Name=mRNA_Ecto-sp9_F_contig9534.17661.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9534:3576..5114+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCCCACCTCCGCAGGAAGCGTTGGGGATGCATCCAGCCGCGATGT
CGACGAGATCGGACAGTGGGAGGACTATACGTGCCAAGGGCAGTTCGAAG
ACCTTGTCAGGTCTTTCGAGACGGTGCTGCGAGAATGGAGAATTTCCGAC
AGAGATGCCTCCCACCTCCGCAGGAAGCGTTGGGGATGCATCCAGCCGCG
ATGTCGACGAGATCGGACAGTGGGAGGACTATACGTGCCAAGGGCAGTTC
GAAGACCTTGTCAGGTCTTTCGAGACGGTGCTGCGAGAATGGAGAATTTC
CGACAGAGACCACGCACTGCTGTCAAACGAAGCTGTTGCTGTTGAGGGCA
TCGTGTCGTCGTTGACGGAGTCCTCCGGGCCGTCGACGTCGCTCCCGGCC
GTGTCCTACTCGCGGTGCCTGGAGCACGATGGTCAGCTCTTCAGCATCCA
GCTGGTGCCCCCGCCCGACCAGCGTACCGTTACCGCTGCCGCTGAGGCTC
CGCCGACAACAGCAGCACCACCTCCAACAACAACAACCACGCACTGCTGT
CAAACGAAGCTGTTGCTGTTGAGGGCATCGTGTCGTCGTTGACGGAGTCC
TCCGGGCCGTCGACGTCGCTCCCGGCCGTGTCCTACTCGCGGTGCCTGGA
GCACGATGGTCAGCTCTTCAGCATCCAGCTGGTGCCCCCGCCCGACCAGC
GTACCGTTACCGCTGCCGCTGAGGCTCCGCCGACAACAGCAGCACCACCT
CCAACAACAACACGACGCCGAATCGAACGGCGTCCGCGGCCTGTCAGCTA
GCGACGCCGAATCGAACGGCGTCCGCGGCCTGTCAGCTAG
back to top