mRNA_Ecto-sp9_F_contig95.17635.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig95.17635.1
Unique NamemRNA_Ecto-sp9_F_contig95.17635.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI)

HSP 1 Score: 1077 bits (2785), Expect = 0.000e+0
Identity = 600/638 (94.04%), Postives = 610/638 (95.61%), Query Frame = 1 
Query:  418 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEKVVKRVARATATSTKESADGDCNSSESSGAXXXXXXXXXXXXXXXSPSSDEALTATPDQPHQGEPENHSSGPPNAEGWTQRTEMDELLHCPPRVDSNKGVDDFGSSESRTDEPPAPRRPAPPVSRGAVVVKANAKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXXXXRTPEKGKGKGKA--AAGTPAARSLAARLAQRQSADTPFGGGLTPGRQRRRTNRSGGGAGANRG 2325
            MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIG STD DGL+LRV+GG+ +GPSSS  +GNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSE+VVKRVARATATSTKESADGDC+SS+SSGA XXXXXXXXXXXXXX PSSDEALTATPDQPHQGEPE  SSGPPNA G TQRTEMDE LHCPPRVDSN+GVDDFGSSESR DEPPAP RPAPPVSRGAVVVKAN KVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAG GAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXX   RTP KGKG      AA TPAARSLAARLAQRQS DTPFGGGLTPGRQRRRT+RSGGGAGANRG
Sbjct:    1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSGGNSDGPSSSNCAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCHSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESRADEPPAPPRPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGRGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGXXXXXXAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 638
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.020e-30
Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGEST--DEDGLKLRVNGGDP-EGPSSSKDSGNGG-ALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 1128
            +K VLEEEEYV+ LG+IIE D+FP+ +K+ +    L D  ++   + T    + +    T  RS    +  DE    L  + G P +    ++D       L +FV THTSEDNEAF ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P+L  + +IC++E  P   AQLL+++G
Sbjct:    3 RKVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVASMTRGNTSERSNASDSGWDEPTPTLEQSTGSPLQDEDHAEDKSRASMTLNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRQIADKACAPKGPK--DDRPSAPQTWKYRARNPLLFPPDLETTREICQVESGPR--AQLLLENG 220
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.770e-29
Identity = 92/226 (40.71%), Postives = 122/226 (53.98%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS 1131
            KK VLEEEEYVD L +IIE D+FP+  K+ R    L D       + T    +  G       + G   D+         G P    +   S     L +FVATHTSEDNE+F ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R   D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC++E  P   +QLL+++ S
Sbjct:    3 KKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDEEDLPWTNTTLRAATTQGNMSVRSDASGSGWDQPTPMAEQLTGSPVVEPAEDKSQASMTLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRLLADKACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVE--PGSKSQLLLENVS 217
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MY39_PHYIT)

HSP 1 Score: 130 bits (326), Expect = 8.240e-29
Identity = 91/215 (42.33%), Postives = 124/215 (57.67%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADH-GQDTTPSRTPAGGSMVGTPVTGLRSIGEST--DEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQ 1089
            KK VLEE+EYV+ LG+IIE D+FP+  K+ +    L D  G   T +   A  +  G  V  +RS    +  D+    +     D +G  S+K S     L  FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D +G+     KL +L NG  +S E+R+  DAACA + PK  D RP+  +TW +R RN L+F P L A+ DIC++ Q
Sbjct:    3 KKVVLEEDEYVEALGQIIERDFFPDLPKLKKQTELLRDEEGLPWTDTTLRAASTSRG--VVSVRSNANESGWDQPTPMVEQYALDEDGHDSTKASM---TLNHFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDDDKD-KGD----PKLHLLTNGTWISKEQRQIADAACAPKGPK--DDRPSAPETWTYRARNPLLFPPELDATRDICQVGQ 205
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.970e-28
Identity = 99/246 (40.24%), Postives = 135/246 (54.88%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQ-----DTT--PSRTPAGGSMVG-----------TPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1137
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +    L D  +     DTT   + T  G + V            TP+    +I ++ DE        G D    +S         L +FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D E  +    KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P   AQLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEEGLPWTDTTLHAASTSRGNASVRSGASGSGWDQPTPIVEQPAIDQAQDE--------GADDNAKASM-------TLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDN--DKEKGDP---KLHLLTNGTWISKEQRQIADDACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVKADP--GAQLLLENSSKS 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.070e-27
Identity = 86/209 (41.15%), Postives = 117/209 (55.98%), Query Frame = 1 
Query:  460 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRI 1083
            K VLEEEEYV+ LGEIIE D+FP+   + R  A +       +P+R P          +G  ++        ++ R    D E  +   +      L +FVATHTSEDNEAF ELQEK  E  +RRY WA+D   DG+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  +TWK R RN L+F P+LA + DICR+
Sbjct:  444 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTA-VPSGWDQPSPAREPT--------ASGTNAL--------VRSRTRNEDDEKSAVESEGVQNMTLNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-DGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATARDICRL 628
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q457_PHYPN)

HSP 1 Score: 127 bits (319), Expect = 1.090e-27
Identity = 91/233 (39.06%), Postives = 131/233 (56.22%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLA--DHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPE--GPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAY-DTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 1137
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +    L   + G   T +      +  G  V+   +I +S  +    +  +  D +  G  S   +     L +FVATHTSEDNE+F ELQEK  +  +RRY WA+ D    G+       KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P +  QLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKKQTKLLRGEEEGLPWTDTTLRVASTSRGN-VSVWSNISDSGWDQPTPVVEHSADDQVQGEDSDDSAKTSMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFVDDKEKGD------PKLHLLTNGTWISKEQRQIADEACASKGPK--DYRPSAPETWKYRARNPLLFPPELEATRDICQVKADPGD--QLLLENSSKS 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTQ1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.230e-27
Identity = 91/208 (43.75%), Postives = 117/208 (56.25%), Query Frame = 1 
Query:  460 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICR 1080
            K VLEEEEYV+ LGEIIE D+FP+   + R  A L+   Q + P+R P             RS      ED  K  V   + EG  +         L++FVATHTSEDNEAF ELQEK  E  +RRY WA+D    G+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  +TWK R RN L+F P+LA + DICR
Sbjct:    5 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVLSSWDQPS-PAREPTANRANALVRNRTRS------EDDEKSAV---ESEGVQNM-------TLSRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-SGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATTRDICR 188
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIQ7_PHYSP)

HSP 1 Score: 126 bits (316), Expect = 2.060e-27
Identity = 89/242 (36.78%), Postives = 119/242 (49.17%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYR-----------------ALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 1128
            KK VLEEEEYVD LG+IIE D+FP+  K+ R                  L      G  +  S     G    TP +G  ++  + + D  +               D+     L  FVATHTSEDNE+FAELQEK     +RRY WA+D     +       KL +L NG  +S E+R   D ACA + PK  D RP+  +TW+ R RN L+F P L A+ DIC++        QLL+++G
Sbjct:    3 KKVVLEEEEYVDALGQIIERDFFPDLPKLKRQTELLREEEGGVPWTDTTLRAANTRGNASVRSSASGTGWDQPTPQSGESAVDATQESDAAEA--------------DAKASMTLNHFVATHTSEDNESFAELQEKAVIDHQRRYHWAFD-----DDKKRGDPKLHLLTNGTWISKEQRRIADEACAPKGPK--DDRPSAPETWRFRARNPLLFPPELEATRDICQVRSGN----QLLLENG 219
[Close]
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Match: Nuclear (protein ES2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A564_PLAHL)

HSP 1 Score: 126 bits (316), Expect = 2.500e-27
Identity = 86/229 (37.55%), Postives = 124/229 (54.15%), Query Frame = 1 
Query:  457 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMY--RALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLKLRVN--GGDPEGPSSSKDSGN-------------GGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQA 1092
            KK VLEE+EYV+ LG IIE D+FP+  K+   R L  LAD G +T                  LR+I  ++D+  ++   +  G D   P +   +G+                L +FVATHTSEDNE+F ELQEK     +R+Y WA+D     E  +   +KL +L NG  +S ++R+ +D ACA +  + D RP   +TW++R RN L+F P L A+ DIC+I+ A
Sbjct:    3 KKVVLEEDEYVETLGLIIERDFFPDLPKLQKQRRLL-LADEGTETA-----------------LRAISTTSDDTSVRSNASVVGWDQPTPYAKLAAGDRVQVEDDSNSVMASMTLNRFVATHTSEDNESFKELQEKAVNDHQRKYHWAFD-----ENKDKGDSKLHLLANGTWISKDQRKLVDEACAPKG-LKDDRPGFPETWRYRARNPLIFQPELEATRDICQIKAA 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig95.17635.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized0.000e+094.04protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6... [more]
Uncharacterized5.020e-3040.17protein n=2 Tax=Phytophthora palmivora var. palmiv... [more]
Uncharacterized1.770e-2940.71protein n=1 Tax=Phytophthora megakarya TaxID=4795 ... [more]
Uncharacterized8.240e-2942.33protein n=1 Tax=Phytophthora infestans (strain T30... [more]
Uncharacterized1.970e-2840.24protein n=1 Tax=Phytophthora cactorum TaxID=29920 ... [more]
Uncharacterized1.070e-2741.15protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized1.090e-2739.06protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q4... [more]
Uncharacterized1.230e-2743.75protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized2.060e-2736.78protein (Fragment) n=1 Tax=Phytophthora sojae (str... [more]
Nuclear2.500e-2737.55protein ES2 n=1 Tax=Plasmopara halstedii TaxID=478... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig95contigEcto-sp9_F_contig95:18218..22115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1093.2
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LRU6
EggNOG free text desc.Nuclear protein Es2
EggNOG OGs2E6IQ@1,2SD85@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear protein DGCR14
Ec32 orthologEc-08_002490.1
Exons3
Model size3065
Cds size2199
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig95.17635.1prot_Ecto-sp9_F_contig95.17635.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig95 18449..21480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.5422199-UTR-Ecto-sp9_F_contig95:18217..184481622931033.5422199-UTR-Ecto-sp9_F_contig95:18217..18448Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig95 18218..18448 +
1692279001.9224834-UTR-Ecto-sp9_F_contig95:18217..184481692279001.9224834-UTR-Ecto-sp9_F_contig95:18217..18448Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig95 18218..18448 +
1622931033.600845-UTR-Ecto-sp9_F_contig95:21480..221151622931033.600845-UTR-Ecto-sp9_F_contig95:21480..22115Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig95 21481..22115 +
1692279001.9694993-UTR-Ecto-sp9_F_contig95:21480..221151692279001.9694993-UTR-Ecto-sp9_F_contig95:21480..22115Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig95 21481..22115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.55904-CDS-Ecto-sp9_F_contig95:18448..190241622931033.55904-CDS-Ecto-sp9_F_contig95:18448..19024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 18449..19024 +
1692279001.9334993-CDS-Ecto-sp9_F_contig95:18448..190241692279001.9334993-CDS-Ecto-sp9_F_contig95:18448..19024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 18449..19024 +
1622931033.5756683-CDS-Ecto-sp9_F_contig95:19406..196011622931033.5756683-CDS-Ecto-sp9_F_contig95:19406..19601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 19407..19601 +
1692279001.9448907-CDS-Ecto-sp9_F_contig95:19406..196011692279001.9448907-CDS-Ecto-sp9_F_contig95:19406..19601Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 19407..19601 +
1622931033.587712-CDS-Ecto-sp9_F_contig95:20052..214801622931033.587712-CDS-Ecto-sp9_F_contig95:20052..21480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 20053..21480 +
1692279001.9582243-CDS-Ecto-sp9_F_contig95:20052..214801692279001.9582243-CDS-Ecto-sp9_F_contig95:20052..21480Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig95 20053..21480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig95.17635.1

>prot_Ecto-sp9_F_contig95.17635.1 ID=prot_Ecto-sp9_F_contig95.17635.1|Name=mRNA_Ecto-sp9_F_contig95.17635.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=733bp
MTTNKPGDGARPKMITADGSKFEVATPTTLARLEDPRAWHARGEGGIQRP
RPRPGSGAIALPMAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPN
NAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDEDGLK
LRVNGGDPEGPSSSKDSGNGGALTKFVATHTSEDNEAFAELQEKDQEAFR
RRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKI
GDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS
TSATATTKRRVIKQSEKVVKRVARATATSTKESADGDCNSSESSGATAVT
AVAATEGGCSSSPSSDEALTATPDQPHQGEPENHSSGPPNAEGWTQRTEM
DELLHCPPRVDSNKGVDDFGSSESRTDEPPAPRRPAPPVSRGAVVVKANA
KVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGY
EEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGAMDVA
SFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAA
ADGRGTHTPAPATPMTPQTPGTGRRTPGTGKRTPRGGRTPEKGKGKGKAA
AGTPAARSLAARLAQRQSADTPFGGGLTPGRQRRRTNRSGGGAGANRGGL
TPLPASPAPAKGKSGAPEGKRSSLTDGLLTLK*
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mRNA from alignment at Ecto-sp9_F_contig95:18218..22115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig95.17635.1 ID=mRNA_Ecto-sp9_F_contig95.17635.1|Name=mRNA_Ecto-sp9_F_contig95.17635.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3898bp|location=Sequence derived from alignment at Ecto-sp9_F_contig95:18218..22115+ (Ectocarpus species9 EcSCA_722f female)
CACCACCTCTACCACAGCTCCTTGTCGCTCTTCACCGATTATCACCACGT
TGTCGCCTTCAGCTCCTGTCCTTCATTCCAGGTTTGTTTGTAACCCACAT
AACATCACGGAACTGGTTCTCACTACTGCTTTTTGGCCTGCCCGTCGTGA
GCCAGCCTGTTCGACTGCTGTTGCAGTTGGGACGAACGCTCTTCAGCGTT
ACAGCTAACTGCTGCTGCTGCTGTAGATGCGATGACCACCAACAAGCCCG
GAGACGGGGCGCGGCCAAAGATGATCACTGCGGATGGGAGTAAATTCGAA
GTGGCAACACCAACCACTCTTGCGCGATTGGAGGATCCACGGGCATGGCA
CGCACGCGGGGAGGGGGGAATACAGCGCCCGAGACCTCGTCCCGGGAGCG
GGGCAATCGCCCTCCCCATGGCCCCACCACTACCAAAAGGGCGATCGGTT
CCGTTGAAAAAGACGGTTCTCGAGGAGGAAGAGTACGTGGACCGCCTGGG
GGAGATTATTGAAGGGGACTACTTCCCCAACAACGCCAAGATGTATCGAG
CCCTCGCTGGGCTTGCCGACCATGGCCAAGACACTACACCTTCCCGCACA
CCGGCAGGTGGCTCCATGGTAGGCACCCCTGTGACTGGGCTACGGAGTAT
TGGCGAGTCTACTGATGAGGATGGCCTGAAGCTTCGAGTGAATGGGGGCG
ATCCGGAGGGACCATCGTCCTCGAAAGACTCGGGAAACGGCGGCGCCCTC
ACCAAGTTCGTTGCGACACATACGTCGGAGGACAACGAAGCCTTCGCCGA
GCTACAGGTGAGAGGGGCGGCAAGATAATGATCTACTGCTGTAACCTCTT
CTCACAAAAATGACCTACTGTAAGTAGCCGATGCACAGCAGTCATGTGTT
GGTTTCAGTCTTGTGCTGGCACTGGGGTGCGTACCCTCACTGGCGTTCGT
GGAGTTTCGATCCCTCTGCTTCTTCAGCTGCACCGATCTACGTTTTGTGC
TCTTTTGCCGTGAGACGGCGAGAGCTTGGAGAACACGTGCTTCCCATCAA
TGCCGTCTGTTTACCTTACTCAATCGGACCGGTCTTTGCTAGATTTTGGG
GTTAGCAACTGACACGAGTTTAATGTGAAGACAACAATAACACAACAACA
ACAACAACAACAATTGCCTTGATCCGCATTCGATTTCAGGAGAAAGACCA
GGAGGCTTTTCGAAGGCGATATTTCTGGGCTTACGATACCACACCAGACG
GGGAGGGCAACAACGCCACGTCTACCAAACTGTTGATACTCCCCAACGGC
AAGATGATGTCCGTCGAGCGGCGGGAGCAAATGGACGCAGCTTGCGCAGA
TCGTCCAAAAATAGGAGATTCACGACCAAATCAGGTGAGACGTCGCAGAC
TCGAGTGCAGTGCAGAGCACATTAGCGTGGCGCGTAGTAGACGGAGGTAC
TATTGTACGGCCTCGTGCTTTTCCGAACCCCAAACATGCCAGGCTTTGTT
TGGGAATCACCACGTCGGTTCACGTCTTTTAGCCAGTCCTGTCACTCAAG
ATACCTTCGCACTTAGTTGCGCACATGACAAACATTTCCCCCATGCAGTA
TTGCCACTCCCTTTTTTAAAGAAGATTGTCTGTACGGGGTGTTCTCCCGT
CAATGTTCTTGAACGGCACACCTCGTTGTTGGAGGATCATAGCAATCGCT
GCATTCAGCCGACGATATCACGGCTGTTGCTGCAACATCGCCTCCGTACT
CCGTACACGTAGGATGGATGTAACCCCCACGCGGTTATGAAAAAGTTGTG
TTTCACCTGTTGTCGTATCTTGCTACTTGCTGCAGGTGAAGACTTGGAAG
CACAGGACACGAAACCAGCTTATGTTTTCTCCGAACTTGGCAGCGTCGAA
TGACATATGCAGAATCGAGCAAGCGCCTACGGAGGCTGCTCAGCTTCTTG
TGAAGGACGGGTCAACATCGGCGACGGCAACAACGAAGCGAAGAGTAATC
AAGCAATCGGAAAAGGTCGTGAAGAGGGTGGCGCGGGCTACAGCAACATC
TACCAAAGAATCTGCAGATGGCGACTGCAATTCTTCAGAGTCGTCCGGGG
CAACCGCAGTAACAGCAGTCGCGGCAACTGAAGGAGGTTGTTCTTCTTCG
CCCTCTAGCGATGAAGCTCTCACCGCGACTCCCGACCAACCGCACCAGGG
CGAACCTGAAAATCATTCTTCAGGGCCACCGAACGCAGAAGGATGGACAC
AGCGGACCGAAATGGACGAACTTTTACATTGCCCGCCTCGCGTAGACTCG
AACAAAGGCGTTGATGATTTTGGATCATCGGAATCACGGACCGATGAGCC
GCCCGCACCACGACGACCAGCACCACCAGTTTCGCGCGGTGCGGTAGTCG
TCAAAGCGAACGCCAAGGTTATTCAGGCCCATGCAACGAGGTTCCCGGTC
CCCGCGCCACGGAAACCAAGCCGAGGTCCTTGGGCATCCCCAATTGAGAA
GCCCTCGTCGTCGCGAGAATCCGTTGCGGAGCTATTGGCGGGAACGGCGG
ACTCGTCGGGGTACGAGGAAGTACCTATGACACCTTCGAGAGTACCAGGC
GTGGATGGAGACTCTCCGCAGATCACCTGGGGTTCCATCGACGGCACTCC
CATGATCCTCGACCCGCGTGCCACTCCTCTCCCAGAGGCCGGCGGGGGGG
CTATGGACGTGGCGAGCTTCATGGAGACACTCGGAGGCGTCGTTGGCGGG
GTTGGCCAACAGCAGTTCGAGATTAAAGATCTCCCTGCGCGAGATAAGCT
TGCGCACCGCCTCGAGGCCGTAGACACTCGCCGGAAGCGAGCGAAGCTTG
GGGCCGGCGCGGCCGCAGACGGAAGGGGGACGCACACGCCCGCGCCGGCA
ACACCGATGACCCCTCAGACGCCCGGCACAGGACGACGAACCCCCGGGAC
GGGGAAACGAACGCCCAGGGGTGGGAGGACACCCGAGAAGGGAAAGGGAA
AGGGAAAGGCTGCGGCGGGGACGCCCGCCGCTCGAAGCCTGGCGGCGAGG
CTAGCTCAGCGGCAGAGCGCCGACACACCGTTCGGCGGTGGGCTCACTCC
TGGACGGCAAAGAAGGCGAACCAACCGCTCCGGGGGGGGAGCTGGTGCCA
ACCGAGGTGGGCTAACACCTCTGCCGGCTTCGCCTGCTCCGGCAAAGGGG
AAGTCGGGCGCGCCTGAAGGCAAAAGATCGTCGCTTACGGATGGCCTGTT
GACCTTGAAGTGAATAAACGCGTTTCCGTTCGTTGTTACATACGGTGATG
TTGCCGTTGGTAGGGTGGTGTTGATGACATGTACCCTCGCTGGTGGGGGT
TTACGCTGTCACTACCCAGAGGACGGCTAGCGCAGAATAAGGTCCAGTAA
AAAGAGGGTAGATAGCGTCTGTAAATTGAGGGTGATTGATGAGCGTTTGT
CGTAGAAAGTGAAGTACTCTTCCTCGAAAATCGTAGCGGTGTCGCTAAAG
GGTGACAGTTCTTTTGCTACATGAGGGGAGGATTTGCCGCTCTTTTGGTG
GCACGAACAGCGAATCGGATCTGGATTGCAACGCTGGTTTGTCCTGTGTG
TGAAACGTATGTAGCAACTTGACGACGCACCCACAGAGCTTTGTTGTGTG
TGGTATTCACTTCACACTTCTCCGGTTACAACCACAATCGGTTGTACGTC
AATACCCCCAAAATCCCATGCTGGCGAAGGCGTTGCTTATGAAGCGCAAG
CTGTTCTACCATGCATGTCGTTCCCGATGCTTCAGTGGAGAATCTCATTT
CGCTGATACACCCGCGAGGTTATCCCGCAGTGAGTAGAGAATTTGAAATA
TTGTGCGCTACCCAGGGGGAACGAGCACATTAAGTGCCTGCCCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig95:18218..22115+

>mRNA_Ecto-sp9_F_contig95.17635.1 ID=mRNA_Ecto-sp9_F_contig95.17635.1|Name=mRNA_Ecto-sp9_F_contig95.17635.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4398bp|location=Sequence derived from alignment at Ecto-sp9_F_contig95:18218..22115+ (Ectocarpus species9 EcSCA_722f female)
ATGACCACCAACAAGCCCGGAGACGGGGCGCGGCCAAAGATGATCACTGC
GGATGGGAGTAAATTCGAAGTGGCAACACCAACCACTCTTGCGCGATTGG
AGGATCCACGGGCATGGCACGCACGCGGGGAGGGGGGAATACAGCGCCCG
AGACCTCGTCCCGGGAGCGGGGCAATCGCCCTCCCCATGGCCCCACCACT
ACCAAAAGGGCGATCGGTTCCGTTGAAAAAGACGGTTCTCGAGGAGGAAG
AGTACGTGGACCGCCTGGGGGAGATTATTGAAGGGGACTACTTCCCCAAC
AACGCCAAGATGTATCGAGCCCTCGCTGGGCTTGCCGACCATGGCCAAGA
CACTACACCTTCCCGCACACCGGCAGGTGGCTCCATGGTAGGCACCCCTG
TGACTGGGCTACGGAGTATTGGCGAGTCTACTGATGAGGATGGCCTGAAG
CTTCGAGTGAATGGGGGCGATCCGGAGGGACCATCGTCCTCGAAAGACTC
GGGAAACGGCGGCGCCCTCACCAAGTTCGTTGCGACACATACGTCGGAGG
ACAACGAAGCCTTCGCCGAGCTACAGATGACCACCAACAAGCCCGGAGAC
GGGGCGCGGCCAAAGATGATCACTGCGGATGGGAGTAAATTCGAAGTGGC
AACACCAACCACTCTTGCGCGATTGGAGGATCCACGGGCATGGCACGCAC
GCGGGGAGGGGGGAATACAGCGCCCGAGACCTCGTCCCGGGAGCGGGGCA
ATCGCCCTCCCCATGGCCCCACCACTACCAAAAGGGCGATCGGTTCCGTT
GAAAAAGACGGTTCTCGAGGAGGAAGAGTACGTGGACCGCCTGGGGGAGA
TTATTGAAGGGGACTACTTCCCCAACAACGCCAAGATGTATCGAGCCCTC
GCTGGGCTTGCCGACCATGGCCAAGACACTACACCTTCCCGCACACCGGC
AGGTGGCTCCATGGTAGGCACCCCTGTGACTGGGCTACGGAGTATTGGCG
AGTCTACTGATGAGGATGGCCTGAAGCTTCGAGTGAATGGGGGCGATCCG
GAGGGACCATCGTCCTCGAAAGACTCGGGAAACGGCGGCGCCCTCACCAA
GTTCGTTGCGACACATACGTCGGAGGACAACGAAGCCTTCGCCGAGCTAC
AGGAGAAAGACCAGGAGGCTTTTCGAAGGCGATATTTCTGGGCTTACGAT
ACCACACCAGACGGGGAGGGCAACAACGCCACGTCTACCAAACTGTTGAT
ACTCCCCAACGGCAAGATGATGTCCGTCGAGCGGCGGGAGCAAATGGACG
CAGCTTGCGCAGATCGTCCAAAAATAGGAGATTCACGACCAAATCAGGAG
AAAGACCAGGAGGCTTTTCGAAGGCGATATTTCTGGGCTTACGATACCAC
ACCAGACGGGGAGGGCAACAACGCCACGTCTACCAAACTGTTGATACTCC
CCAACGGCAAGATGATGTCCGTCGAGCGGCGGGAGCAAATGGACGCAGCT
TGCGCAGATCGTCCAAAAATAGGAGATTCACGACCAAATCAGGTGAAGAC
TTGGAAGCACAGGACACGAAACCAGCTTATGTTTTCTCCGAACTTGGCAG
CGTCGAATGACATATGCAGAATCGAGCAAGCGCCTACGGAGGCTGCTCAG
CTTCTTGTGAAGGACGGGTCAACATCGGCGACGGCAACAACGAAGCGAAG
AGTAATCAAGCAATCGGAAAAGGTCGTGAAGAGGGTGGCGCGGGCTACAG
CAACATCTACCAAAGAATCTGCAGATGGCGACTGCAATTCTTCAGAGTCG
TCCGGGGCAACCGCAGTAACAGCAGTCGCGGCAACTGAAGGAGGTTGTTC
TTCTTCGCCCTCTAGCGATGAAGCTCTCACCGCGACTCCCGACCAACCGC
ACCAGGGCGAACCTGAAAATCATTCTTCAGGGCCACCGAACGCAGAAGGA
TGGACACAGCGGACCGAAATGGACGAACTTTTACATTGCCCGCCTCGCGT
AGACTCGAACAAAGGCGTTGATGATTTTGGATCATCGGAATCACGGACCG
ATGAGCCGCCCGCACCACGACGACCAGCACCACCAGTTTCGCGCGGTGCG
GTAGTCGTCAAAGCGAACGCCAAGGTTATTCAGGCCCATGCAACGAGGTT
CCCGGTCCCCGCGCCACGGAAACCAAGCCGAGGTCCTTGGGCATCCCCAA
TTGAGAAGCCCTCGTCGTCGCGAGAATCCGTTGCGGAGCTATTGGCGGGA
ACGGCGGACTCGTCGGGGTACGAGGAAGTACCTATGACACCTTCGAGAGT
ACCAGGCGTGGATGGAGACTCTCCGCAGATCACCTGGGGTTCCATCGACG
GCACTCCCATGATCCTCGACCCGCGTGCCACTCCTCTCCCAGAGGCCGGC
GGGGGGGCTATGGACGTGGCGAGCTTCATGGAGACACTCGGAGGCGTCGT
TGGCGGGGTTGGCCAACAGCAGTTCGAGATTAAAGATCTCCCTGCGCGAG
ATAAGCTTGCGCACCGCCTCGAGGCCGTAGACACTCGCCGGAAGCGAGCG
AAGCTTGGGGCCGGCGCGGCCGCAGACGGAAGGGGGACGCACACGCCCGC
GCCGGCAACACCGATGACCCCTCAGACGCCCGGCACAGGACGACGAACCC
CCGGGACGGGGAAACGAACGCCCAGGGGTGGGAGGACACCCGAGAAGGGA
AAGGGAAAGGGAAAGGCTGCGGCGGGGACGCCCGCCGCTCGAAGCCTGGC
GGCGAGGCTAGCTCAGCGGCAGAGCGCCGACACACCGTTCGGCGGTGGGC
TCACTCCTGGACGGCAAAGAAGGCGAACCAACCGCTCCGGGGGGGGAGCT
GGTGCCAACCGAGGTGGGCTAACACCTCTGCCGGCTTCGCCTGCTCCGGC
AAAGGGGAAGTCGGGCGCGCCTGAAGGCAAAAGATCGTCGCTTACGGATG
GCCTGTTGACCTTGAAGTGAGTGAAGACTTGGAAGCACAGGACACGAAAC
CAGCTTATGTTTTCTCCGAACTTGGCAGCGTCGAATGACATATGCAGAAT
CGAGCAAGCGCCTACGGAGGCTGCTCAGCTTCTTGTGAAGGACGGGTCAA
CATCGGCGACGGCAACAACGAAGCGAAGAGTAATCAAGCAATCGGAAAAG
GTCGTGAAGAGGGTGGCGCGGGCTACAGCAACATCTACCAAAGAATCTGC
AGATGGCGACTGCAATTCTTCAGAGTCGTCCGGGGCAACCGCAGTAACAG
CAGTCGCGGCAACTGAAGGAGGTTGTTCTTCTTCGCCCTCTAGCGATGAA
GCTCTCACCGCGACTCCCGACCAACCGCACCAGGGCGAACCTGAAAATCA
TTCTTCAGGGCCACCGAACGCAGAAGGATGGACACAGCGGACCGAAATGG
ACGAACTTTTACATTGCCCGCCTCGCGTAGACTCGAACAAAGGCGTTGAT
GATTTTGGATCATCGGAATCACGGACCGATGAGCCGCCCGCACCACGACG
ACCAGCACCACCAGTTTCGCGCGGTGCGGTAGTCGTCAAAGCGAACGCCA
AGGTTATTCAGGCCCATGCAACGAGGTTCCCGGTCCCCGCGCCACGGAAA
CCAAGCCGAGGTCCTTGGGCATCCCCAATTGAGAAGCCCTCGTCGTCGCG
AGAATCCGTTGCGGAGCTATTGGCGGGAACGGCGGACTCGTCGGGGTACG
AGGAAGTACCTATGACACCTTCGAGAGTACCAGGCGTGGATGGAGACTCT
CCGCAGATCACCTGGGGTTCCATCGACGGCACTCCCATGATCCTCGACCC
GCGTGCCACTCCTCTCCCAGAGGCCGGCGGGGGGGCTATGGACGTGGCGA
GCTTCATGGAGACACTCGGAGGCGTCGTTGGCGGGGTTGGCCAACAGCAG
TTCGAGATTAAAGATCTCCCTGCGCGAGATAAGCTTGCGCACCGCCTCGA
GGCCGTAGACACTCGCCGGAAGCGAGCGAAGCTTGGGGCCGGCGCGGCCG
CAGACGGAAGGGGGACGCACACGCCCGCGCCGGCAACACCGATGACCCCT
CAGACGCCCGGCACAGGACGACGAACCCCCGGGACGGGGAAACGAACGCC
CAGGGGTGGGAGGACACCCGAGAAGGGAAAGGGAAAGGGAAAGGCTGCGG
CGGGGACGCCCGCCGCTCGAAGCCTGGCGGCGAGGCTAGCTCAGCGGCAG
AGCGCCGACACACCGTTCGGCGGTGGGCTCACTCCTGGACGGCAAAGAAG
GCGAACCAACCGCTCCGGGGGGGGAGCTGGTGCCAACCGAGGTGGGCTAA
CACCTCTGCCGGCTTCGCCTGCTCCGGCAAAGGGGAAGTCGGGCGCGCCT
GAAGGCAAAAGATCGTCGCTTACGGATGGCCTGTTGACCTTGAAGTGA
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