mRNA_Ecto-sp9_F_contig9482.17620.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9482.17620.1
Unique NamemRNA_Ecto-sp9_F_contig9482.17620.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9482.17620.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK7_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 1.570e-81
Identity = 184/192 (95.83%), Postives = 186/192 (96.88%), Query Frame = 1 
Query:   55 MIRTTIAGVDSLLHRGAAAATSAARQGASSRGLGDR--HASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAVNVGDYSPDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHSRGRPAERRRVPSMMVVTPNARS 624
            MIRTTIAGVDSLLHRGAAAATSAARQGASSRGLGDR  HASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAV+VGDYSPDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +RGRPAERRRVPSMMVVTPNARS
Sbjct:    1 MIRTTIAGVDSLLHRGAAAATSAARQGASSRGLGDRQQHASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAVDVGDYSPDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGRPAERRRVPSMMVVTPNARS 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9482.17620.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.570e-8195.83protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9482contigEcto-sp9_F_contig9482:968..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.8e-71
Seed eggNOG ortholog2880.D7FRK7
KEGG rclassRC00037,RC00094
KEGG koko:K16342
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map01100,map01110,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
EC3.1.1.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size627
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.1861582-CDS-Ecto-sp9_F_contig9482:967..12131622931031.1861582-CDS-Ecto-sp9_F_contig9482:967..1213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9482 968..1213 +
1692279000.9488707-CDS-Ecto-sp9_F_contig9482:967..12131692279000.9488707-CDS-Ecto-sp9_F_contig9482:967..1213Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9482 968..1213 +
1622931031.2059858-CDS-Ecto-sp9_F_contig9482:1944..23221622931031.2059858-CDS-Ecto-sp9_F_contig9482:1944..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9482 1945..2322 +
1692279000.962164-CDS-Ecto-sp9_F_contig9482:1944..23221692279000.962164-CDS-Ecto-sp9_F_contig9482:1944..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9482 1945..2322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9482.17620.1prot_Ecto-sp9_F_contig9482.17620.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9482 968..2322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9482.17620.1

>prot_Ecto-sp9_F_contig9482.17620.1 ID=prot_Ecto-sp9_F_contig9482.17620.1|Name=mRNA_Ecto-sp9_F_contig9482.17620.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp
ARHVQTQACYHARTHPAAMIRTTIAGVDSLLHRGAAAATSAARQGASSRG
LGDRHASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAVNVGDYSPDAT
ATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARA
KKEAAARRHAATTAARASSKQPAGEAAAAAAAAPHSRGRPAERRRVPSMM
VVTPNARS
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mRNA from alignment at Ecto-sp9_F_contig9482:968..2323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9482.17620.1 ID=mRNA_Ecto-sp9_F_contig9482.17620.1|Name=mRNA_Ecto-sp9_F_contig9482.17620.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1356bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9482:968..2323+ (Ectocarpus species9 EcSCA_722f female)
GCACGACACGTCCAAACGCAGGCGTGCTACCACGCGCGCACACACCCCGC
TGCCATGATTAGAACCACCATTGCGGGGGTAGATTCTCTGCTGCACCGTG
GTGCTGCCGCTGCCACCAGTGCGGCTCGACAGGGCGCATCGTCGAGAGGT
CTCGGGGATCGTCATGCCTCAGCAGCAGTGGCGATTTGCTGGCGAGGAGG
TCCAACAAGGAGACATTGGTCGAGTCAGAAGGAGGCAGAGGAAAAGGTGT
GTCTGCGTTCTGCAGCGCGCTTTTGCAAGGTCGAAAGCAAGATGTTCGTG
TGGCTGAGATAGCGGTCGTCAATCGCAGTTTTTGAATGTCAGCAAGGAGA
GTGTGTCACTCGAAGCTGCTGTCATATTTGTTGGTTGTGGAGCTTTCAGT
GGCCAGCTCTATGGGCCTGGTCCTCGTCTGCGCAAGTGCGAGAGAGCCTT
GGCGGACACCTCTCCGTATGGTGATTGTTTGCGAGTTTTCGGGGTTTTGT
CTTTGTCAATAGCAGGCAGGAGAGAGCAGAGATACCTCCTGTCCAAGTGC
GTAGGTTGTGTCGGTATGTGTGCGAAAGTTTGAACGTTTGCCCTTGTTGA
TAGCGCAAGACATGATCTTGCTCCGTATGGATATGTCGTGATCTGTTGTC
TTATCCGGTGACATGGGAACTCAACACTCAACGAACCGCGTGTGTCTGGT
TGGCGCACAAATCGCGCATTGTGCTCTTTGCGCACCCTGCACGAGTGGAG
GTTGCATATCCAATTACTTTTGCTTCCGTTTTTTCGGGTCCAACCTGCTG
TTGTTCATGTATGCACTACATGCACTGAGGCCACCGGACCGTCGCCCGCT
CGCAGCACTTCCTTAGTTTCTGCAGGCTGTCTAACAAGTCCTTGCGATGG
CAGAAAACAAGCCGTCCTCCTCGCTTTTTCTACGAAAAGCGTCCCTAACA
TGAACGACCCCTCCCGCCTGCCAGCAGGATAGCGCCGGCGATGCCGCAGT
CAACGTCGGCGACTACTCCCCAGACGCGACTGCAACTACCGAGGAGCCCG
CCCCACCCAAGCCGCAGCGTACCTTCGTGGTGCGGACGCCCGACTCCTCC
TCCTCCCTCAAGGTCACCGTGCCGAGCACGACCGCCGAGGCGATGGCGAT
GAACCTGTCGATCAGGGAGAACGCCAGGGCGAAGAAGGAGGCGGCGGCGC
GCCGGCACGCGGCCACCACAGCGGCCAGGGCGTCGTCGAAGCAACCGGCA
GGTGAGGCGGCGGCGGCGGCGGCGGCCGCCCCCCACAGCAGAGGCAGGCC
GGCCGAACGGCGGCGGGTGCCGAGCATGATGGTGGTGACGCCCAACGCCC
GGTCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9482:968..2323+

>mRNA_Ecto-sp9_F_contig9482.17620.1 ID=mRNA_Ecto-sp9_F_contig9482.17620.1|Name=mRNA_Ecto-sp9_F_contig9482.17620.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9482:968..2323+ (Ectocarpus species9 EcSCA_722f female)
GCACGACACGTCCAAACGCAGGCGTGCTACCACGCGCGCACACACCCCGC
TGCCATGATTAGAACCACCATTGCGGGGGTAGATTCTCTGCTGCACCGTG
GTGCTGCCGCTGCCACCAGTGCGGCTCGACAGGGCGCATCGTCGAGAGGT
CTCGGGGATCGTCATGCCTCAGCAGCAGTGGCGATTTGCTGGCGAGGAGG
TCCAACAAGGAGACATTGGTCGAGTCAGAAGGAGGCAGAGGAAAAGGCAC
GACACGTCCAAACGCAGGCGTGCTACCACGCGCGCACACACCCCGCTGCC
ATGATTAGAACCACCATTGCGGGGGTAGATTCTCTGCTGCACCGTGGTGC
TGCCGCTGCCACCAGTGCGGCTCGACAGGGCGCATCGTCGAGAGGTCTCG
GGGATCGTCATGCCTCAGCAGCAGTGGCGATTTGCTGGCGAGGAGGTCCA
ACAAGGAGACATTGGTCGAGTCAGAAGGAGGCAGAGGAAAAGGATAGCGC
CGGCGATGCCGCAGTCAACGTCGGCGACTACTCCCCAGACGCGACTGCAA
CTACCGAGGAGCCCGCCCCACCCAAGCCGCAGCGTACCTTCGTGGTGCGG
ACGCCCGACTCCTCCTCCTCCCTCAAGGTCACCGTGCCGAGCACGACCGC
CGAGGCGATGGCGATGAACCTGTCGATCAGGGAGAACGCCAGGGCGAAGA
AGGAGGCGGCGGCGCGCCGGCACGCGGCCACCACAGCGGCCAGGGCGTCG
TCGAAGCAACCGGCAGGTGAGGCGGCGGCGGCGGCGGCGGCCGCCCCCCA
CAGCAGAGGCAGGCCGGCCGAACGGCGGCGGGTGCCGAGCATGATGGTGG
TGACGCCCAACGCCCGGTCGGATAGCGCCGGCGATGCCGCAGTCAACGTC
GGCGACTACTCCCCAGACGCGACTGCAACTACCGAGGAGCCCGCCCCACC
CAAGCCGCAGCGTACCTTCGTGGTGCGGACGCCCGACTCCTCCTCCTCCC
TCAAGGTCACCGTGCCGAGCACGACCGCCGAGGCGATGGCGATGAACCTG
TCGATCAGGGAGAACGCCAGGGCGAAGAAGGAGGCGGCGGCGCGCCGGCA
CGCGGCCACCACAGCGGCCAGGGCGTCGTCGAAGCAACCGGCAGGTGAGG
CGGCGGCGGCGGCGGCGGCCGCCCCCCACAGCAGAGGCAGGCCGGCCGAA
CGGCGGCGGGTGCCGAGCATGATGGTGGTGACGCCCAACGCCCGGTCG
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