mRNA_Ecto-sp9_F_contig9466.17611.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9466.17611.1
Unique NamemRNA_Ecto-sp9_F_contig9466.17611.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9466.17611.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9466contigEcto-sp9_F_contig9466:25..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_005900.1
Exons1
Model size461
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9466.17611.1prot_Ecto-sp9_F_contig9466.17611.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9466 96..320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.6860118-UTR-Ecto-sp9_F_contig9466:24..951622931029.6860118-UTR-Ecto-sp9_F_contig9466:24..95Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9466 25..95 +
1692279000.1597497-UTR-Ecto-sp9_F_contig9466:24..951692279000.1597497-UTR-Ecto-sp9_F_contig9466:24..95Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9466 25..95 +
1622931029.7200832-UTR-Ecto-sp9_F_contig9466:320..4851622931029.7200832-UTR-Ecto-sp9_F_contig9466:320..485Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9466 321..485 +
1692279000.1845706-UTR-Ecto-sp9_F_contig9466:320..4851692279000.1845706-UTR-Ecto-sp9_F_contig9466:320..485Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9466 321..485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.7033439-CDS-Ecto-sp9_F_contig9466:95..3201622931029.7033439-CDS-Ecto-sp9_F_contig9466:95..320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9466 96..320 +
1692279000.1742158-CDS-Ecto-sp9_F_contig9466:95..3201692279000.1742158-CDS-Ecto-sp9_F_contig9466:95..320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9466 96..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9466.17611.1

>prot_Ecto-sp9_F_contig9466.17611.1 ID=prot_Ecto-sp9_F_contig9466.17611.1|Name=mRNA_Ecto-sp9_F_contig9466.17611.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
MRGVLRCTVQREASSLSTWAPKECGVADWLPALVWWPALATGILPVAMFA
TSQHCVSYDPRHPLCIGQNSLLLS*
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mRNA from alignment at Ecto-sp9_F_contig9466:25..485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9466.17611.1 ID=mRNA_Ecto-sp9_F_contig9466.17611.1|Name=mRNA_Ecto-sp9_F_contig9466.17611.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=461bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9466:25..485+ (Ectocarpus species9 EcSCA_722f female)
ATGCCACAGCGCCGAGGGGGAGGGGCAAGGGCACGGGCAAGGACAAGACC
AACAAAAAGGTGACATCGTCAATGAGAGGAGTTTTGCGCTGTACTGTACA
GCGCGAAGCGTCCAGCTTGAGCACATGGGCTCCAAAGGAGTGTGGCGTTG
CCGATTGGTTGCCGGCTCTTGTTTGGTGGCCTGCGCTAGCGACGGGAATA
CTGCCTGTAGCGATGTTTGCAACCTCTCAACACTGCGTGAGTTATGACCC
AAGGCATCCCCTCTGCATTGGGCAAAACTCACTGCTGCTGTCATGAACGA
GTACGAGAGCAAAGCCCATTTCGCGATTGCCAGAACAAGTCTGTGTCCTC
ATGCTTCTGTGGTGCTCGGTGCTACACCCCATGTATATGCGCGTACAGTA
TCTCCGTTTTTCTGTTTGTGAGGTCGGAACGATGAACAAGTTGCGACTCG
AGTGGCCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9466:25..485+

>mRNA_Ecto-sp9_F_contig9466.17611.1 ID=mRNA_Ecto-sp9_F_contig9466.17611.1|Name=mRNA_Ecto-sp9_F_contig9466.17611.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9466:25..485+ (Ectocarpus species9 EcSCA_722f female)
ATGAGAGGAGTTTTGCGCTGTACTGTACAGCGCGAAGCGTCCAGCTTGAG
CACATGGGCTCCAAAGGAGTGTGGCGTTGCCGATTGGTTGCCGGCTCTTG
TTTGGTGGCCTGCGCTAGCGACGGGAATACTGCCTGTAGCGATGTTTGCA
ACCTCTCAACACTGCGTGAGTTATGACCCAAGGCATCCCCTCTGCATTGG
GCAAAACTCACTGCTGCTGTCATGAATGAGAGGAGTTTTGCGCTGTACTG
TACAGCGCGAAGCGTCCAGCTTGAGCACATGGGCTCCAAAGGAGTGTGGC
GTTGCCGATTGGTTGCCGGCTCTTGTTTGGTGGCCTGCGCTAGCGACGGG
AATACTGCCTGTAGCGATGTTTGCAACCTCTCAACACTGCGTGAGTTATG
ACCCAAGGCATCCCCTCTGCATTGGGCAAAACTCACTGCTGCTGTCATGA
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