mRNA_Ecto-sp9_F_contig9463.17610.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9463.17610.1
Unique NamemRNA_Ecto-sp9_F_contig9463.17610.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9463.17610.1 vs.
Match: Similar (to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.160e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 GCAAFVVKVSVVGGLSRSARLCGLARRLGAEAVLSSAFETGVGLAHASILASCFTTPG 174
            GCAAFVVKVSVVGGLSRSARLCGLARRLGAEAVLSSAFETGVGLAHASILASCFTTPG
Sbjct: 2519 GCAAFVVKVSVVGGLSRSARLCGLARRLGAEAVLSSAFETGVGLAHASILASCFTTPG 2576
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BLAST of mRNA_Ecto-sp9_F_contig9463.17610.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.470e-26
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 GCAAFVVKVSVVGGLSRSARLCGLARRLGAEAVLSSAFETGVGLAHASILASCFTTPG 174
            GCAAFVVKVSVVGGLSRSARLCGLAR LGAEAVLSSAFETGVGLAHASILASCFTTPG
Sbjct: 1009 GCAAFVVKVSVVGGLSRSARLCGLARHLGAEAVLSSAFETGVGLAHASILASCFTTPG 1066
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9463.17610.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Similar1.160e-26100.00to Isochorismate Synthase n=1 Tax=Ectocarpus silic... [more]
Uncharacterized5.470e-2698.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9463contigEcto-sp9_F_contig9463:136..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.7e-22
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.637246-CDS-Ecto-sp9_F_contig9463:135..3151622931029.637246-CDS-Ecto-sp9_F_contig9463:135..315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9463 136..315 +
1692279000.1472123-CDS-Ecto-sp9_F_contig9463:135..3151692279000.1472123-CDS-Ecto-sp9_F_contig9463:135..315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9463 136..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9463.17610.1prot_Ecto-sp9_F_contig9463.17610.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9463 136..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9463.17610.1

>prot_Ecto-sp9_F_contig9463.17610.1 ID=prot_Ecto-sp9_F_contig9463.17610.1|Name=mRNA_Ecto-sp9_F_contig9463.17610.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=60bp
GCAAFVVKVSVVGGLSRSARLCGLARRLGAEAVLSSAFETGVGLAHASIL
ASCFTTPGE*
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mRNA from alignment at Ecto-sp9_F_contig9463:136..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9463.17610.1 ID=mRNA_Ecto-sp9_F_contig9463.17610.1|Name=mRNA_Ecto-sp9_F_contig9463.17610.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9463:136..315+ (Ectocarpus species9 EcSCA_722f female)
GGTTGCGCCGCCTTCGTGGTTAAGGTTAGCGTCGTCGGGGGGCTCAGCAG
GAGCGCGCGGCTGTGCGGCTTGGCGCGGCGCCTGGGAGCGGAGGCCGTGT
TGAGCTCGGCGTTCGAGACGGGCGTCGGCCTCGCCCACGCCTCGATTCTC
GCGTCGTGCTTCACGACCCCGGGTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9463:136..315+

>mRNA_Ecto-sp9_F_contig9463.17610.1 ID=mRNA_Ecto-sp9_F_contig9463.17610.1|Name=mRNA_Ecto-sp9_F_contig9463.17610.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9463:136..315+ (Ectocarpus species9 EcSCA_722f female)
GGTTGCGCCGCCTTCGTGGTTAAGGTTAGCGTCGTCGGGGGGCTCAGCAG
GAGCGCGCGGCTGTGCGGCTTGGCGCGGCGCCTGGGAGCGGAGGCCGTGT
TGAGCTCGGCGTTCGAGACGGGCGTCGGCCTCGCCCACGCCTCGATTCTC
GCGTCGTGCTTCACGACCCCGGGTGAGTGAGGTTGCGCCGCCTTCGTGGT
TAAGGTTAGCGTCGTCGGGGGGCTCAGCAGGAGCGCGCGGCTGTGCGGCT
TGGCGCGGCGCCTGGGAGCGGAGGCCGTGTTGAGCTCGGCGTTCGAGACG
GGCGTCGGCCTCGCCCACGCCTCGATTCTCGCGTCGTGCTTCACGACCCC
GGGTGAGTGA
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