mRNA_Ecto-sp9_F_contig9460.17609.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9460.17609.1
Unique NamemRNA_Ecto-sp9_F_contig9460.17609.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9460.17609.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9460contigEcto-sp9_F_contig9460:1667..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9460.17609.1prot_Ecto-sp9_F_contig9460.17609.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9460 1755..2072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.5491753-UTR-Ecto-sp9_F_contig9460:1666..17541622931029.5491753-UTR-Ecto-sp9_F_contig9460:1666..1754Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9460 1667..1754 +
1692279000.1129816-UTR-Ecto-sp9_F_contig9460:1666..17541692279000.1129816-UTR-Ecto-sp9_F_contig9460:1666..1754Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9460 1667..1754 +
1622931029.5839534-UTR-Ecto-sp9_F_contig9460:2072..21411622931029.5839534-UTR-Ecto-sp9_F_contig9460:2072..2141Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9460 2073..2141 +
1692279000.136314-UTR-Ecto-sp9_F_contig9460:2072..21411692279000.136314-UTR-Ecto-sp9_F_contig9460:2072..2141Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9460 2073..2141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.566953-CDS-Ecto-sp9_F_contig9460:1754..20721622931029.566953-CDS-Ecto-sp9_F_contig9460:1754..2072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9460 1755..2072 +
1692279000.1266494-CDS-Ecto-sp9_F_contig9460:1754..20721692279000.1266494-CDS-Ecto-sp9_F_contig9460:1754..2072Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9460 1755..2072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9460.17609.1

>prot_Ecto-sp9_F_contig9460.17609.1 ID=prot_Ecto-sp9_F_contig9460.17609.1|Name=mRNA_Ecto-sp9_F_contig9460.17609.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
MQQCIVDSRCLLFCTQQGGGARKTRGTGDNAKTGEEEKRESTSFGGCFCV
RSRWNKRPGWKVKLKVEWYGSCVGMHRLCIVWPSLLCRERLQPGLPSAGL
LSYEA*
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mRNA from alignment at Ecto-sp9_F_contig9460:1667..2141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9460.17609.1 ID=mRNA_Ecto-sp9_F_contig9460.17609.1|Name=mRNA_Ecto-sp9_F_contig9460.17609.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=475bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9460:1667..2141+ (Ectocarpus species9 EcSCA_722f female)
CTTGCTTACTCCCCCCGGTGGTCTGCCTTGGATATTTTTCGTTTTTTTTT
TTTGTTGTTCCTCGAGGGTTTGTCATTGCCGAGGGACCATGCAGCAGTGC
ATCGTCGACTCTCGATGCCTGCTTTTTTGTACACAGCAGGGGGGGGGGGC
AAGGAAAACAAGAGGAACGGGAGATAATGCCAAGACGGGGGAAGAAGAGA
AAAGAGAATCGACTTCGTTCGGTGGTTGTTTCTGTGTTCGTTCCCGTTGG
AACAAGCGGCCGGGTTGGAAAGTGAAGTTGAAAGTCGAGTGGTACGGTTC
TTGTGTGGGTATGCATAGGTTGTGTATCGTCTGGCCTTCGCTGTTGTGTC
GCGAACGGCTCCAGCCGGGTTTGCCGTCTGCTGGTTTGTTGTCGTACGAA
GCTTGACTAGAATTTCTGGAGGGAGGGACGGCAAATGGTGAAGGGGGGGG
AAGGGGCCCAGCACGGCCAGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9460:1667..2141+

>mRNA_Ecto-sp9_F_contig9460.17609.1 ID=mRNA_Ecto-sp9_F_contig9460.17609.1|Name=mRNA_Ecto-sp9_F_contig9460.17609.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9460:1667..2141+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGCAGTGCATCGTCGACTCTCGATGCCTGCTTTTTTGTACACAGCA
GGGGGGGGGGGCAAGGAAAACAAGAGGAACGGGAGATAATGCCAAGACGG
GGGAAGAAGAGAAAAGAGAATCGACTTCGTTCGGTGGTTGTTTCTGTGTT
CGTTCCCGTTGGAACAAGCGGCCGGGTTGGAAAGTGAAGTTGAAAGTCGA
GTGGTACGGTTCTTGTGTGGGTATGCATAGGTTGTGTATCGTCTGGCCTT
CGCTGTTGTGTCGCGAACGGCTCCAGCCGGGTTTGCCGTCTGCTGGTTTG
TTGTCGTACGAAGCTTGAATGCAGCAGTGCATCGTCGACTCTCGATGCCT
GCTTTTTTGTACACAGCAGGGGGGGGGGGCAAGGAAAACAAGAGGAACGG
GAGATAATGCCAAGACGGGGGAAGAAGAGAAAAGAGAATCGACTTCGTTC
GGTGGTTGTTTCTGTGTTCGTTCCCGTTGGAACAAGCGGCCGGGTTGGAA
AGTGAAGTTGAAAGTCGAGTGGTACGGTTCTTGTGTGGGTATGCATAGGT
TGTGTATCGTCTGGCCTTCGCTGTTGTGTCGCGAACGGCTCCAGCCGGGT
TTGCCGTCTGCTGGTTTGTTGTCGTACGAAGCTTGA
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