mRNA_Ecto-sp9_F_contig9459.17606.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9459.17606.1
Unique NamemRNA_Ecto-sp9_F_contig9459.17606.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9459.17606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.610e-39
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = 2 
Query:    5 MFDTLDNALNYQARCQRDDQFSLPILVAEDGTWLERNGFMPPAKDP-GLNKLKVVYAAMPPHLKPEYLKTERLIMQLKQNLIPALEEVLSWTTKVSEVDQSHDAD 316
            MFDT DNA  YQ RC++   FSLPILV EDG  LERNG+MPPAKDP  LN+LK+VY AMPPHL PEY+KTER + QLK NLIPALE+VL  T +VSEV+  +DAD
Sbjct:    1 MFDTHDNAHAYQVRCKKVGTFSLPILVEEDGASLERNGYMPPAKDPDSLNRLKIVYGAMPPHLTPEYVKTERFVKQLK-NLIPALEQVLEATAEVSEVESGNDAD 104
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BLAST of mRNA_Ecto-sp9_F_contig9459.17606.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.030e-37
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 2 
Query:    2 VMFDTLDNALNYQARCQRDDQFSLPILVAEDGTWLERNGFMPPAKDP-GLNKLKVVYAAMPPHLKPEYLKTERLIMQLKQNLIPALEEVLSWTTKVSEVDQSHDAD 316
            VMFDT DNA  YQ RC++   FSLPILV EDG  LERNG+MPPAKDP  LN+L++VY AMPPHL PEY+KTER + QLK NLIPALE+VL  T +VSEV+  HDAD
Sbjct: 2146 VMFDTHDNAHAYQVRCKKVGTFSLPILVEEDGASLERNGYMPPAKDPDSLNRLRIVYGAMPPHLTPEYVKTERFVKQLK-NLIPALEQVLEATAEVSEVESGHDAD 2250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9459.17606.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.610e-3968.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.030e-3768.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9459contigEcto-sp9_F_contig9459:3423..5290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001780.1
Exons3
Model size316
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9459.17606.1prot_Ecto-sp9_F_contig9459.17606.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9459 3423..5286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.8657448-CDS-Ecto-sp9_F_contig9459:3422..35031622931028.8657448-CDS-Ecto-sp9_F_contig9459:3422..3503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 3423..3503 -
1692278999.782928-CDS-Ecto-sp9_F_contig9459:3422..35031692278999.782928-CDS-Ecto-sp9_F_contig9459:3422..3503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 3423..3503 -
1622931028.8881724-CDS-Ecto-sp9_F_contig9459:4587..47161622931028.8881724-CDS-Ecto-sp9_F_contig9459:4587..4716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 4588..4716 -
1692278999.7954495-CDS-Ecto-sp9_F_contig9459:4587..47161692278999.7954495-CDS-Ecto-sp9_F_contig9459:4587..4716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 4588..4716 -
1622931028.910149-CDS-Ecto-sp9_F_contig9459:5184..52861622931028.910149-CDS-Ecto-sp9_F_contig9459:5184..5286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 5185..5286 -
1692278999.803971-CDS-Ecto-sp9_F_contig9459:5184..52861692278999.803971-CDS-Ecto-sp9_F_contig9459:5184..5286Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9459 5185..5286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.9293158-UTR-Ecto-sp9_F_contig9459:5286..52901622931028.9293158-UTR-Ecto-sp9_F_contig9459:5286..5290Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9459 5287..5290 -
1692278999.8126686-UTR-Ecto-sp9_F_contig9459:5286..52901692278999.8126686-UTR-Ecto-sp9_F_contig9459:5286..5290Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9459 5287..5290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9459.17606.1

>prot_Ecto-sp9_F_contig9459.17606.1 ID=prot_Ecto-sp9_F_contig9459.17606.1|Name=mRNA_Ecto-sp9_F_contig9459.17606.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
MFDTLDNALNYQARCQRDDQFSLPILVAEDGTWLERNGFMPPAKDPGLNK
LKVVYAAMPPHLKPEYLKTERLIMQLKQNLIPALEEVLSWTTKVSEVDQS
HDAD
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mRNA from alignment at Ecto-sp9_F_contig9459:3423..5290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9459.17606.1 ID=mRNA_Ecto-sp9_F_contig9459.17606.1|Name=mRNA_Ecto-sp9_F_contig9459.17606.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1868bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9459:3423..5290- (Ectocarpus species9 EcSCA_722f female)
GGTGATGTTCGACACGCTTGACAACGCCCTCAATTACCAGGCCCGGTGCC
AGCGCGACGATCAGTTCTCCCTGCCGATTCTCGTGGCAGAAGATGGGACT
TGGCTTGTGAGTAGATAGGATCACTTGTTTTGCTATAGTCTGTGTAGTCT
ATCCGTTTCCCGGTACGCTCATGGAGCAGTTTGGCCACATTTGTGGCCGC
ATGGTCCCGTTACCGACCGTGTGCGGTTGGTGCGAGTGAGTGACTTTTTA
CCGGTGGCCCGCGTTTACGTAACATCACCGTCGATTCAACGCAAACAACG
GGTACTTTTCTGGGCTCCATCATCTGTAATTTTTGGTTTGGAGGTGTTGG
TCTGTGTTGAGTCTTCGCGAAGTCATTTTTCATGAATAGCTAAGGGCGTC
CTCCTCTTCCTCACGTTGAAGTTGCAGCAGTGGAGACCTCGGAAGGGAGA
TCGGCCCAACTCGTGGAAGGATCTACAGTATATTCAAGAAGTACGATTGT
ATGCTTATGGCGTATTTTTGTCCTCCCCTCTTTTGGTTCGTCGGTTTCAC
TGTCAATTTGTTTTTTTGTTGCAGGAGCGGAACGGCTTCATGCCCCCCGC
CAAGGACCCGGGCCTGAACAAGCTCAAGGTTGTGTACGCCGCCATGCCGC
CTCACCTCAAGCCCGAGTATCTCAAGACGGAGCGGTTAATCATGCAGCTT
AAGGTGAAGAAATTACATGTAGTTGTTCTGTGGAGGAGATGGATTTTTGT
GCCATGAAATACAGTACTGTAAGAATGAAATAACAAAAAGTAGTGGGTGA
CGCTGCTTGGTGTGATGACGGCCATGGACGCGCGCAGTGTGCCTACTGAC
GGGTACAGCTCGAAGGAGACGTTTGTTGTTGTTGTTGTTGCTGCTGCTGG
TGAGTGGTGCTTGCCTCATTGCTAAAGTGCCTGAGACTGCAGTAACACCA
CCGGTATTTACCGCAGAGAAGGCTATCCCACTGCGAGGGAATGTGTTGCG
ATCACCGGCCTTCAGACGACCTTTGAGCGCCCATCGGTTCCGTCGTGAAG
ATGTCCCGCCGGTCGTTATGGGCGCCCGATATTTCACAACAATGCGCGTT
GCGATGTCGTGTGTGTGTTCGTGTGTACTTCTTACTATTAGCATCGACCG
CGGTAACCTGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTGAAAA
CACACAATGCTTGTATAGTCCGCAATCTGGGACCCTGCATCCGGGCGTCA
TGGGGAAGTCTACGCTACTCTCTGGATTAAAGACAGATACCGTAGCAATG
ACAGAAGAAAACTTCACGTGTTTGCCATGCCTTCTACTACTTTGGACCCG
CGCGTCCGTTTCCGAGTGCTTTCATCGTCTTCCCTGCATCTACGATCGCC
ACTCTCGTCGCCAACATTCCCACTACTTTTTGGCAGGTCCTCTCCAGTCC
TGCGGCGTTTGTTGTGAGGAAGGTCATCTGGCTCAAACCCTTTACTCTCT
TCCACGCCATGTTTTCCTCCTCCATCATCCTCCATCCTCCTTTCCCTTTC
CTTCATCTGCGTCACCCCCAATTACCCTGAATACCATCGTTATTGCTTTC
ACCCTACCTACTATGTACTGAAATCCCAACCTAATGGCCATGGTGGAAAT
TGGTCGGACCATCATTACATATTCCCAGTCCATGACGTTTGAAAACATCA
CGAATTCATACCGACAGAAAACGAGCCAGCTCGAAGGAAAAACGTCTCCG
AATTTGGTGTGTGTTTTTTTCTTTTTTTTTTTTGCAGCAAAACCTTATCC
CGGCGCTCGAGGAAGTCCTGAGTTGGACGACGAAGGTTTCGGAGGTGGAC
CAAAGTCACGATGCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9459:3423..5290-

>mRNA_Ecto-sp9_F_contig9459.17606.1 ID=mRNA_Ecto-sp9_F_contig9459.17606.1|Name=mRNA_Ecto-sp9_F_contig9459.17606.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9459:3423..5290- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGACACGCTTGACAACGCCCTCAATTACCAGGCCCGGTGCCAGCG
CGACGATCAGTTCTCCCTGCCGATTCTCGTGGCAGAAGATGGGACTTGGC
TTATGTTCGACACGCTTGACAACGCCCTCAATTACCAGGCCCGGTGCCAG
CGCGACGATCAGTTCTCCCTGCCGATTCTCGTGGCAGAAGATGGGACTTG
GCTTGAGCGGAACGGCTTCATGCCCCCCGCCAAGGACCCGGGCCTGAACA
AGCTCAAGGTTGTGTACGCCGCCATGCCGCCTCACCTCAAGCCCGAGTAT
CTCAAGACGGAGCGGTTAATCATGCAGCTTAAGGAGCGGAACGGCTTCAT
GCCCCCCGCCAAGGACCCGGGCCTGAACAAGCTCAAGGTTGTGTACGCCG
CCATGCCGCCTCACCTCAAGCCCGAGTATCTCAAGACGGAGCGGTTAATC
ATGCAGCTTAAGCAAAACCTTATCCCGGCGCTCGAGGAAGTCCTGAGTTG
GACGACGAAGGTTTCGGAGGTGGACCAAAGTCACGATGCCGACCAAAACC
TTATCCCGGCGCTCGAGGAAGTCCTGAGTTGGACGACGAAGGTTTCGGAG
GTGGACCAAAGTCACGATGCCGAC
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