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Homology
BLAST of mRNA_Ecto-sp9_F_contig9458.17605.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM66_ECTSI) HSP 1 Score: 312 bits (799), Expect = 3.180e-100 Identity = 221/249 (88.76%), Postives = 226/249 (90.76%), Query Frame = 1
Query: 1 KRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFEIDNSSDSFGLSLRRKRERGAALPSLLPPPPFALSSLPSLLSPGAAVTPTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVAGKAEQKNNKPRPPAHRYNGKGQTDRRSSESSYNRRPRSPQREAXXXXXXX--SGGVCGAGGRLSAFATTSAVPLSTTGGVGAAXXXXXXXXXXXGKDSRDRACVRVTVTTEMSYK 741
+RTSSGGDVWVCVDRLCGMSRELVVVCPA+NEADPLHISAEFEIDNSSDSFGL+LRRKRE GAALPS LPPPPFALSSLPSLLSPGAAVTPTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPVAG+AEQKNNKP PPAHRYNG GQ RRSSE SYNRRPRSPQREA SGG+CGAGGRLSAFAT S VPLST GGVGAAXXXXXXXXXXXGK SRDRACVRVTVTTEMSYK
Sbjct: 149 ERTSSGGDVWVCVDRLCGMSRELVVVCPATNEADPLHISAEFEIDNSSDSFGLNLRRKREGGAALPSPLPPPPFALSSLPSLLSPGAAVTPTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TPVAGEAEQKNNKPPPPAHRYNGTGQAHRRSSEGSYNRRPRSPQREAAAAVAAAVTSGGICGAGGRLSAFATASTVPLSTRGGVGAAXXXXXXXXXXXGKVSRDRACVRVTVTTEMSYK 394
BLAST of mRNA_Ecto-sp9_F_contig9458.17605.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG52_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.880e-73 Identity = 224/563 (39.79%), Postives = 232/563 (41.21%), Query Frame = 1
Query: 1 KRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFEIDNSSDSFGLSLRRKRERGAALPSLLPPPPFALSSLPSLLSPGAAVTPTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPVA------------GKAEQKNNKPRPPAHRYNGKGQTDRRSSESSYNRRPRSPQREAXXXXXXXSGGVCGAGGRLSAFATTSAVPLSTTGGVGAAXXXXXXXXXXXGKDSRDRACVRVTVTTEMSYKICDANPSSEDDAVIAVVTGVFERVFRVRVSGAVQGVQPTDENPIVGIKLER 894
KRTSSGGDVWVCVDRLCGMSRELVVVCPASNE D LHISAEFEIDNSSDSFGLSL +KRE GAA P LPSLLSPGA+VTPTTA XXXXXXXXXXXXXXXX TPVA G+AE+KNNKPRPP H +G GQ DRRSSE SYNRRPRSPQ EA + GVCGAGGRLSAFA+TSAVP ST GGVGAA GKDSRDRACVRVTVTTEMSYKICDANPS+EDDAVIAVVTGVFERVFRV VSGAVQGVQPTDENPIVGIKLER
Sbjct: 324 KRTSSGGDVWVCVDRLCGMSRELVVVCPASNETDSLHISAEFEIDNSSDSFGLSLSKKREGGAAAP------------LPSLLSPGASVTPTTAMTAGTACGTSSGDKAGNVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPFSPLSATWNGTGSGRWSPVEMNSVLGVIPVGDYAMEAGGAADEKTAPGQQTPPARQPGRVSMPATTPQAASCVSACSEDAIYPSRRKSYPAPAALPLASPPRRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPRPALXXXXXXXXGAGSVGVPTATGATTPVAAXXXXXXXXXLAGEAEKKNNKPRPPTHLDSGTGQADRRSSEGSYNRRPRSPQGEAAAAAAATNEGVCGAGGRLSAFASTSAVP-STRGGVGAATGAAGPGAGEGGKDSRDRACVRVTVTTEMSYKICDANPSNEDDAVIAVVTGVFERVFRVGVSGAVQGVQPTDENPIVGIKLER 873
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_002650.1 |
| Exons | 4 |
| Model size | 1116 |
| Cds size | 843 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931028.6948943-UTR-Ecto-sp9_F_contig9458:1359..1578 | 1622931028.6948943-UTR-Ecto-sp9_F_contig9458:1359..1578 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig9458 1360..1578 - |
| 1692278999.6913574-UTR-Ecto-sp9_F_contig9458:1359..1578 | 1692278999.6913574-UTR-Ecto-sp9_F_contig9458:1359..1578 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig9458 1360..1578 - |
| 1622931028.8055654-UTR-Ecto-sp9_F_contig9458:4847..4901 | 1622931028.8055654-UTR-Ecto-sp9_F_contig9458:4847..4901 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig9458 4848..4901 - |
| 1692278999.7709694-UTR-Ecto-sp9_F_contig9458:4847..4901 | 1692278999.7709694-UTR-Ecto-sp9_F_contig9458:4847..4901 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig9458 4848..4901 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931028.720651-CDS-Ecto-sp9_F_contig9458:1578..1597 | 1622931028.720651-CDS-Ecto-sp9_F_contig9458:1578..1597 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 1579..1597 - |
| 1692278999.7040658-CDS-Ecto-sp9_F_contig9458:1578..1597 | 1692278999.7040658-CDS-Ecto-sp9_F_contig9458:1578..1597 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 1579..1597 - |
| 1622931028.741667-CDS-Ecto-sp9_F_contig9458:2696..2833 | 1622931028.741667-CDS-Ecto-sp9_F_contig9458:2696..2833 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 2697..2833 - |
| 1692278999.717359-CDS-Ecto-sp9_F_contig9458:2696..2833 | 1692278999.717359-CDS-Ecto-sp9_F_contig9458:2696..2833 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 2697..2833 - |
| 1622931028.7618446-CDS-Ecto-sp9_F_contig9458:3371..3793 | 1622931028.7618446-CDS-Ecto-sp9_F_contig9458:3371..3793 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 3372..3793 - |
| 1692278999.737284-CDS-Ecto-sp9_F_contig9458:3371..3793 | 1692278999.737284-CDS-Ecto-sp9_F_contig9458:3371..3793 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 3372..3793 - |
| 1622931028.7824569-CDS-Ecto-sp9_F_contig9458:4582..4847 | 1622931028.7824569-CDS-Ecto-sp9_F_contig9458:4582..4847 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 4583..4847 - |
| 1692278999.7567425-CDS-Ecto-sp9_F_contig9458:4582..4847 | 1692278999.7567425-CDS-Ecto-sp9_F_contig9458:4582..4847 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9458 4583..4847 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9458.17605.1 >prot_Ecto-sp9_F_contig9458.17605.1 ID=prot_Ecto-sp9_F_contig9458.17605.1|Name=mRNA_Ecto-sp9_F_contig9458.17605.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp
MSRELVVVCPASNEADPLHISAEFEIDNSSDSFGLSLRRKRERGAALPSL LPPPPFALSSLPSLLSPGAAVTPTTATTTGTASGTSSGGSVGVPTASGAA TPAAAPAAVAAATPVAGKAEQKNNKPRPPAHRYNGKGQTDRRSSESSYNR RPRSPQREAAAAAAATSGGVCGAGGRLSAFATTSAVPLSTTGGVGAAAGA AGAGAGEGGKDSRDRACVRVTVTTEMSYKICDANPSSEDDAVIAVVTGVF ERVFRVRVSGAVQGVQPTDENPIVGIKLER* back to topmRNA from alignment at Ecto-sp9_F_contig9458:1360..4901- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig9458.17605.1 ID=mRNA_Ecto-sp9_F_contig9458.17605.1|Name=mRNA_Ecto-sp9_F_contig9458.17605.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3542bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9458:1360..4901- (Ectocarpus species9 EcSCA_722f female) AAGCGCACGTCGAGCGGCGGGGACGTCTGGGTCTGCGTCGACCGCCTCTG
CGGGATGAGCCGCGAGCTGGTGGTCGTCTGCCCGGCGTCTAACGAGGCCG
ACCCCCTCCACATCTCCGCGGAGTTCGAGATCGACAACAGCAGCGACAGC
TTCGGGCTCAGCCTCAGGAGGAAGAGGGAAAGGGGGGCGGCGCTGCCGTC
CCTCCTGCCGCCGCCGCCGTTCGCGTTGTCGTCGCTGCCGTCCCTCCTGT
CGCCGGGTGCGGCGGTCACCCCGACAACGGCGACGACTACCGGGACCGCG
AGCGGGACCAGCAGCGGCGGTAAGGCCGGAGACGTGTTGCCTCCTCCTCC
TCCTCCTCCTCCTTCGAGTGCGCCTTCGAGCAGAGACTGTGGCGGCGGCG
GTGCCAGCGCCGCCGTTGCCGCTTCCGGCTTCACGTTGCCGTTACCACTC
CCGCAACAGCAGCAGCAGCATCAGCCGTTCTCTCCGTTGTCGGCCACTTG
GAACGGCACCGGGTCGGGGAGATGGAGCCCCGCCGAGATCAGCTCCGTGC
TGGGCGTTATTCCAGTCGGAGACCACGCCATGGAGGCAGGAGGGGCAGCG
GGCGAGAAGACGGCACTGGGGCAACAATCGCCGCGGGCACGGCAGCCCGG
CCGTGTTTCCATGCCTGCCACGACACCCCAAGCCGCGTCCTGTCTCCCCG
CCTGCTCCGAGGATGCGATCTCCCCCTACCGCAGAAAGTCGGACCCTGCG
CCTGCGGTGCCCCCTCTGTCTTCTCCACCACGCGGGGGCGTTGTTGTTGT
TGCTGGGAAACCGGCGGCGGAAACGACGGCGGAGGTTCAGGATAAGGCTG
GAGGAGGCCACGGTGGCGGTAGCACCACCAGCAGTGCCGGTACCGAGGGA
GGGGCAGGCACGGCCAGAGGAGGGGATAATGATGCTGCCAAGCTCGCCAG
TGCTACAAGTAAATCCAGCACCACCACCACCACCACCACCACCGGCGGCG
CCAGCAGCACCAGCACCACCAGCAATCGCAGCGGCGCCGGTGCCAGACCT
CCTCCGCTACCACCGCGACCCGCGTTGCCGCCGCCCTTGCCCCCGCGCCC
GGGAAAAGGTAGCGTCGGCGTACCGACCGCCTCGGGCGCGGCTACACCAG
CGGCGGCGCCAGCGGCGGTGGCGGCGGCGACTCCTGTAGCGGGTAAAGCG
GAGCAGAAAAACAACAAGCCGCGGCCACCGGCACACCGCTACAACGGGAA
GGGGCAGACCGACCGCCGCTCGTCGGAGAGCTCCTACAATAGGCGGCCGA
GATCGCCCCAGCGGGAAGCGGCGGCGGCGGCGGCGGCGACTAGTGGAGGC
GTTTGCGGGGCCGGGGGGCGTCTCTCGGCGTTCGCGACGACGTCTGCGGT
ACCGTTGTCGACGACAGGCGGGGTAGGGGCGGCGGCCGGGGCGGCCGGGG
CGGGGGCGGGAGAAGGCGGTAAAGATTCCCGGGATCGGGCCTGCGTGCGG
GTGACGGTGACAACGGAGATGAGCTACAAGGTGATAAATAAAACAATGTT
TTTTTGAGCTCGATTGCCGGAAGAGGCGGAGAGAGTGGCACCGTTTCCAA
GCTTGATTGCTCCGCAACCAAGAGGGAGCGGAAAGAGACCGATGCGTTGA
CGGAAAGCCCTCGACGAGATGTTTCGAAAAACCTCCATCCATTTTTCTTG
TGGATTAATTGAGCTTTTGGAAATCGGTCTAGGGGAGGTGCCGCATCTCC
TCCTCTTACTGTATTGTACGGTAATTTTTTTTGTGGGTCTCTTCCCGTAT
GTGGTGGTGGTGGTTCGGGGAGGCCGAGCCCATGAGACGGTGCTGCTATG
CGTCGAACTGTCTCGTGTGTGCTACAGTACTACGCTGCCGTGACCGATTT
GTTTCTCTGCGGCTACATGGGCTCGGCGGCGACCCAGCTCAGCTGTCGCG
CCCGTTTTGTTCCGGCGCGCCCACATGGGCCCGGGGGCCCCCCCCCCCCC
CCCCCCCCCCCGTTCCCAATCCCCGTCCCCCCCCCCCCCCCCCCGCGTGC
GTGCCGGTTCGGCTTCAGATCTGTGACGCTAACCCTTCCAGCGAGGACGA
TGCGGTGATCGCGGTCGTGACGGGCGTGTTCGAGAGAGTGTTCAGGGTGC
GCGTGAGCGGTGCGGTTCAAGGGGTTCAGCCGACGGACGAGAACCCGATC
GTTGGGTAAGGGGCGCCGCGATTTCGAGGACAAGGGGGCGGGGGCGGGGG
GGGGGCGTACTCATGATGTTTTGCATGCCTTTCAGTAGCGGGTATAGACC
ATTGACCACGCGTCCTACGGTTGGTTCCCTCAGGGCCGATCACCGATTGG
TGGCGGGGGGGGGATAGGGTAGGTTACGGTGGGGTAGGATTTCTTGTTCA
GTTTTGTTATTTTGTTCCTTCTCCCACCCACTCTCAGTACACGCAGGTAT
GTATACTGAATAAGTTGTTGTTATTCCTTTCGGTACTCATTCAAACATGC
TGCTGTTGCCTTCTTGGCTTGAGATGCGAGTCGAACAACCCCACTAGGTA
GGACTGTCCCCCTCAAGGCCCTGAGCGTTATCCCTTCCTTCCTTTCGTTC
TTGAGGTGACGGCGACTAGGGAGGGGGGGGGTAGCGGGGGAACGGGTCCA
CCCGACACAGACAGATAAATGTTGAGCACGCCTCAGAACTCCCTTGGTGT
GACGGTGATGCCGCCGGATGAGATGTAGGTGGGAAGAGGATCGAATGGGC
ATATTACCACTTCTGAACCCGTCGTGGGCGGGTGTGTGTGTGAGAGAGAA
AACAATCATACGAGGTGACCTTGCTCGAACGAAAAAAAAACCATCGCCGA
CAATGGGAGAGCGTGCCACGTTGTTCCCGTCGCTTGGTCTATTTTACGAT
TGGTCCGTTTCGACACAGGTGCAAGTCTATTGCCAGATGAAAGATCTATT
ACCAGATGAAAGATCTATTGCCAGATGAAATATCTACTGCCAGATGAAAC
ATCTATTGCCGTGGTGCCCACATCCATTCCCGGGTCTACTGTACATTCCC
ATTCCGCACTGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTT
TCCCCCTCCTCCCTCCCAAACCCGCACCCGGCGCGGCGGGAAACCACTGG
AGCGCTCCCTCCCGCCCTCCCCNNNNNNNNNNCAAAAAGAAACCTCCCTT
CCCCTGGGCCCCCCACCCCCCCCCCGGTCTCCCTTCCCTCCCCACCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCACCGTGTTATGCTTGCTGACTTCT
CCAGGATAAAGCTGGAACGGTGACGAGGGTCAAGCCTGGATCAGTCCTTT
CGCCTGCCCCCCATCAAAACCCCTCGTCGGGTGTCGCCAAAGGTTCGGAG
CGAATTTGAATAATTTATACCACAGACGGCGGCGGCGGAGAGGCGGGCGG
GCGCGGCGTCATGCCCAACATGAGTAAACTACTTCTGTGTTCAGTGTGCG
TTTGTTTGATGTTTTTCATCAAGGTACAGCAGTAATCCCTTC back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig9458:1360..4901- >mRNA_Ecto-sp9_F_contig9458.17605.1 ID=mRNA_Ecto-sp9_F_contig9458.17605.1|Name=mRNA_Ecto-sp9_F_contig9458.17605.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9458:1360..4901- (Ectocarpus species9 EcSCA_722f female) ATGAGCCGCGAGCTGGTGGTCGTCTGCCCGGCGTCTAACGAGGCCGACCC CCTCCACATCTCCGCGGAGTTCGAGATCGACAACAGCAGCGACAGCTTCG GGCTCAGCCTCAGGAGGAAGAGGGAAAGGGGGGCGGCGCTGCCGTCCCTC CTGCCGCCGCCGCCGTTCGCGTTGTCGTCGCTGCCGTCCCTCCTGTCGCC GGGTGCGGCGGTCACCCCGACAACGGCGACGACTACCGGGACCGCGAGCG GGACCAGCAGCGGCGATGAGCCGCGAGCTGGTGGTCGTCTGCCCGGCGTC TAACGAGGCCGACCCCCTCCACATCTCCGCGGAGTTCGAGATCGACAACA GCAGCGACAGCTTCGGGCTCAGCCTCAGGAGGAAGAGGGAAAGGGGGGCG GCGCTGCCGTCCCTCCTGCCGCCGCCGCCGTTCGCGTTGTCGTCGCTGCC GTCCCTCCTGTCGCCGGGTGCGGCGGTCACCCCGACAACGGCGACGACTA CCGGGACCGCGAGCGGGACCAGCAGCGGCGGTAGCGTCGGCGTACCGACC GCCTCGGGCGCGGCTACACCAGCGGCGGCGCCAGCGGCGGTGGCGGCGGC GACTCCTGTAGCGGGTAAAGCGGAGCAGAAAAACAACAAGCCGCGGCCAC CGGCACACCGCTACAACGGGAAGGGGCAGACCGACCGCCGCTCGTCGGAG AGCTCCTACAATAGGCGGCCGAGATCGCCCCAGCGGGAAGCGGCGGCGGC GGCGGCGGCGACTAGTGGAGGCGTTTGCGGGGCCGGGGGGCGTCTCTCGG CGTTCGCGACGACGTCTGCGGTACCGTTGTCGACGACAGGCGGGGTAGGG GCGGCGGCCGGGGCGGCCGGGGCGGGGGCGGGAGAAGGCGGTAAAGATTC CCGGGATCGGGCCTGCGTGCGGGTGACGGTGACAACGGAGATGAGCTACA AGGTAGCGTCGGCGTACCGACCGCCTCGGGCGCGGCTACACCAGCGGCGG CGCCAGCGGCGGTGGCGGCGGCGACTCCTGTAGCGGGTAAAGCGGAGCAG AAAAACAACAAGCCGCGGCCACCGGCACACCGCTACAACGGGAAGGGGCA GACCGACCGCCGCTCGTCGGAGAGCTCCTACAATAGGCGGCCGAGATCGC CCCAGCGGGAAGCGGCGGCGGCGGCGGCGGCGACTAGTGGAGGCGTTTGC GGGGCCGGGGGGCGTCTCTCGGCGTTCGCGACGACGTCTGCGGTACCGTT GTCGACGACAGGCGGGGTAGGGGCGGCGGCCGGGGCGGCCGGGGCGGGGG CGGGAGAAGGCGGTAAAGATTCCCGGGATCGGGCCTGCGTGCGGGTGACG GTGACAACGGAGATGAGCTACAAGATCTGTGACGCTAACCCTTCCAGCGA GGACGATGCGGTGATCGCGGTCGTGACGGGCGTGTTCGAGAGAGTGTTCA GGGTGCGCGTGAGCGGTGCGGTTCAAGGGGTTCAGCCGACGGACGAGAAC CCGATCGTTGGATCTGTGACGCTAACCCTTCCAGCGAGGACGATGCGGTG ATCGCGGTCGTGACGGGCGTGTTCGAGAGAGTGTTCAGGGTGCGCGTGAG CGGTGCGGTTCAAGGGGTTCAGCCGACGGACGAGAACCCGATCGTTGGGA TAAAGCTGGAACGGTGAGATAAAGCTGGAACGGTGA back to top
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