mRNA_Ecto-sp9_F_contig9452.17602.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9452.17602.1
Unique NamemRNA_Ecto-sp9_F_contig9452.17602.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9452.17602.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 5.070e-94
Identity = 140/156 (89.74%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:    1 MCDDNFSSFPTCVLKGRAHFHHDLQRLLGKAKWRAFKRSRAAATGGENEWYDKQWKAGACHGQGKIHFADSGDMHVGSWVGN*MHGKGKIVHRGEGGGDEGTHNTSVNCVGWRGAWDNGQLSGQATAQYNYGDRYTGGFERGRRSGEGTMFAATQV 468
            MCD++ SS PTCVL+GRAHFHHDLQRLLGKAKWRAFKRS AAATGGENEWYDKQWKAGACHGQG I FA SGDM VGSWVGN MHGKGKIVH GEGG DEGTHNTSVNCVG RG WDNGQLSGQATAQYNYG+RYTGGFERGRRSGEGTMFAATQV
Sbjct:    1 MCDESLSSLPTCVLEGRAHFHHDLQRLLGKAKWRAFKRSCAAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCVGSWVGNQMHGKGKIVHGGEGGEDEGTHNTSVNCVGSRGVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAATQV 156
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BLAST of mRNA_Ecto-sp9_F_contig9452.17602.1 vs.
Match: Phosphatidylinositol-4-phosphate (5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.690e-8
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  118 RAAATGGENEWYDKQWKAGACHGQGKIHFADSGDMHV 228
            + AATGGENEWYD QWK+GA HGQG+ HFA+SGD++V
Sbjct:  152 KVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYV 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9452.17602.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.070e-9489.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Phosphatidylinositol-4-phosphate6.690e-872.975-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9452contigEcto-sp9_F_contig9452:1215..5038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D7G0U8
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002220.1
Exons5
Model size1444
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9452.17602.1prot_Ecto-sp9_F_contig9452.17602.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9452 1215..2732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.2298636-CDS-Ecto-sp9_F_contig9452:1214..13101622931028.2298636-CDS-Ecto-sp9_F_contig9452:1214..1310Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 1215..1310 +
1692278999.4850678-CDS-Ecto-sp9_F_contig9452:1214..13101692278999.4850678-CDS-Ecto-sp9_F_contig9452:1214..1310Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 1215..1310 +
1622931028.246121-CDS-Ecto-sp9_F_contig9452:2320..24141622931028.246121-CDS-Ecto-sp9_F_contig9452:2320..2414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 2321..2414 +
1692278999.4999099-CDS-Ecto-sp9_F_contig9452:2320..24141692278999.4999099-CDS-Ecto-sp9_F_contig9452:2320..2414Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 2321..2414 +
1622931028.2619545-CDS-Ecto-sp9_F_contig9452:2673..27321622931028.2619545-CDS-Ecto-sp9_F_contig9452:2673..2732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 2674..2732 +
1692278999.5080292-CDS-Ecto-sp9_F_contig9452:2673..27321692278999.5080292-CDS-Ecto-sp9_F_contig9452:2673..2732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9452 2674..2732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.2805328-UTR-Ecto-sp9_F_contig9452:2732..27841622931028.2805328-UTR-Ecto-sp9_F_contig9452:2732..2784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 2733..2784 +
1692278999.516586-UTR-Ecto-sp9_F_contig9452:2732..27841692278999.516586-UTR-Ecto-sp9_F_contig9452:2732..2784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 2733..2784 +
1622931028.2955933-UTR-Ecto-sp9_F_contig9452:3641..38061622931028.2955933-UTR-Ecto-sp9_F_contig9452:3641..3806Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 3642..3806 +
1692278999.5246248-UTR-Ecto-sp9_F_contig9452:3641..38061692278999.5246248-UTR-Ecto-sp9_F_contig9452:3641..3806Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 3642..3806 +
1622931028.3149178-UTR-Ecto-sp9_F_contig9452:4060..50381622931028.3149178-UTR-Ecto-sp9_F_contig9452:4060..5038Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 4061..5038 +
1692278999.5384138-UTR-Ecto-sp9_F_contig9452:4060..50381692278999.5384138-UTR-Ecto-sp9_F_contig9452:4060..5038Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9452 4061..5038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9452.17602.1

>prot_Ecto-sp9_F_contig9452.17602.1 ID=prot_Ecto-sp9_F_contig9452.17602.1|Name=mRNA_Ecto-sp9_F_contig9452.17602.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MCDDNFSSFPTCVLKGRAHFHHDLQRLLGKAKWRAFKRSRAAATGGENEW
YDKQWKAGACHGQGKIHFADSGDMHVGSWVGN*
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mRNA from alignment at Ecto-sp9_F_contig9452:1215..5038+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9452.17602.1 ID=mRNA_Ecto-sp9_F_contig9452.17602.1|Name=mRNA_Ecto-sp9_F_contig9452.17602.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3824bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9452:1215..5038+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCGATGACAATTTCTCTTCATTCCCGACTTGCGTGTTGAAAGGGCG
AGCTCACTTTCATCACGACCTACAGCGGCTGCTGGGAAAGGCCAAGGTAT
GCCGGGTGGAAGTCGCAATCATTACAATATACCGCGTCTTGATTTGGAAT
TGATTGTTGGACCGTCATTTGGGATGTGCAGTTCTTTCCGTACTATCAAC
AGTGTTCCAGGGAGCGCTGATGGAGGCGGCGGAAACCAAGGATATTCACT
CCACCTTATCAGTATTTTTGGGAAAGTGTTATTTGGAATGGAAGTGAAAT
CAAGACCTCAAGGCTACGACGTGACGATGGCCACACGATTTCACTTTCGT
TCGACGTCGGCACTGTCTCCAACCTTGAGTCGTGGTCGGGATGAAGAGGG
CCCGGGTCTAGTGCTTCGAGAATTGAGGGATGATGCCTTCCTTGACTGGA
ACATGATCCGAGTCGACGTTGTTGTCCTTCTCCATGACGTTCACACGCTC
ACCGTGAATACCGGTTTCCCAGATCAAGACCGATGCATCTTTGCACTCGC
ATCACAGAGCCGGCCAATGGTGGCCATGCAGTACTATTTCGCTCTCGCGT
CGAGGGAACTACGAAACACGAAGACCTTCTCAAAATTGACGTAGCTATAA
CAATTTTGGTGTTCCTAAATTCACTCGGCGATTGTTCCGTTGTCAACCCG
GCTGTCGTGGGCGACCAGACTGATGTTTGGGACCCGCACGACAAATTTGT
TCCTCACAGTGAATATTCCACCGGAGCCCGCATACAGAGGGACAAGCCCT
CAACAAAAAGCTACGACTCGCGCTATTCTCGCTGAGGAAAAGGTCATGCA
TGGAGTTTCTGCCGCCTTTAGTGACAGGTGTTGAGGGAGTGAATCGGTAT
AAGAAAAGCGTAAACGTTTTTGTGCTTGCTTCCGGGACTATGGCACTAAA
CGAACGGAAATACCTACGCGGGTAGACGGAAGTAGGTAAAGCTTGCGGAT
ACTAGGACCAGACCTTCGTTAACAGCGACTGCTAAGCCAAAGGTGGGACA
TACGGCGTGATGAACGGTAGGGTAAGTTGCGCCGGCATTTCCCTCGACAT
ATGCAGTGGCGGGCTTTCAAACGATCTCGTGCGGCAGCTACCGGTGGTGA
GAACGAGTGGTACGACAAGCAGTGGAAAGCTGGAGCCTGTCACGGTCAAG
GTGAGCCCTCCTCCCGCTGACCCCGACAATAGAAGTAGGAGAATGTCTCA
CTGTAGTTCAAGAATGAAATGTTTCATAACTTGCCTGTTCTCATGTGAAC
GGCTTTCCGGCCCACTGCTGACGACAAATAGGCGCAGAATCTACTACACC
TGCCAGCTTCTGGGAGCGTGATGCAGCACGGGTGCGATCTTTACACTCCC
ACCTGGCTGCGAAATTGAAACGATAACCTTGCCCGCCCCAAGCGCACGTT
TGATGACAGGAAAAATCCACTTTGCCGATAGCGGCGACATGCATGTCGGC
TCCTGGGTGGGGAACTAAATGCACGGGAAAGGAAAGATCGTGCATAGAGG
TGAAGGTGGAGGGGACGAAGGTGGGCTTGCGTCTAACTAAACCTTTGCAT
TTAGGAGGGCATCGCACACGACCAACTAGACCCGAGATCAAGTGAATGGT
CGAGTGAACCGTCTGAATGTGGGTGCATCCTATCATTCGCATCGGGTATT
GCTGACGAATCGCCCATACCCGACAGGTGACCTATGGTGTGATCTTCGAC
ACGGTCACGGCGTATACAGTGGCCCCGACTCCACCTATGACGGTGCCTGG
AGCAACGACCGTCGGCACGGCCATGGAAAGCTCAGCGACAAGGACGGGAA
CGTGTTCGAGGTTTTTTTCAGAAGTTTGGACCGGAATCAACACGAGAACT
GGGTTGTATTCCGCGCGTAGGACGACGAGACACTGGTACTTAAGGTAGCT
GAGGACATGTGGGTATGAGTCCAGCTGCCAGTAGCGATACAACGATGTCA
ATCATGGCGTGTCGCGCATTGACTACGGTAGTAGACTATTGCTTCACCGC
CGGCAGCACTGTTTGGTGATTTTATCACATCCTTTTCCGACGCAGGAGAA
AGCATGGCAATGGTCAACTCAAGTCCGCGGCAGGCGACGCGATTGAATGT
GGTGACATGTAAGTCCCCTGTCTGCATTCAATGGATTTCAATGTAGCGCG
TGCGTCAGGGCGTACCATCGTTAATGAGTTTCTCGCCACGGCGGCACCGC
AAACGAGTGAAGCTTTACGCATGGTCGTCTTCACGAAATGCACGTGGTCC
CTGTCGTTGACGGTGCTCGGTCTTGGGCACGGGCTCTGTTGTACAAAGAC
TACACGCTAGACCATATCCTTCTGGGTAGGTAGTCAAAGTTGATTTGATG
CTTGTCACACCTTTTCTGGTATGACAGGAACGCACAACACTTCCGTGAAT
TGTGTGGGGTGGAGAGGTGCGTGGGACAACGGGCAGCTCTCCGGCCAAGC
GACGGCTCAGTACAACTACGGAGATCGGTACACTGGCGGCTTCGAAAGGG
GCCGGAGGAGCGGCGAGGGAACTATGTTCGCCGCCACACAGGGTGAGGCA
ATACCGGAGAAAAATCTTTGTTGAAAATGGCATAGCTACCCGAACAGATT
CAGTATGGCCTTTTGACTTATCTCCGCGATTTTGTGGTACCGGGGATACA
TCTACAGCCGTCGTCTGCGGGGGGTATTGATGATTGTCAGCTTCACGATA
TAGTTCGGAGCATCGTTGAGCCCGACCAAAAGCTCTCGGTGCCATGAACT
TCTGTTCGCTTTCGTCCCTCTCCCTTATGAAATCAATTCGTGAAAGTTTC
GAGTTCACGGGCACCTCCAAGAAAGGCGTCAAGAACGGTTCGGGACGCCT
GCGCCTTCCGTGCGGTAGGAGCGTGGAAGGCTATGGATATTGGGCAATCT
CGTCGGCAACTCGAAATTTTCGTTTGCGCCTGGCTCCGAATGGAACGGAA
TGATCCGGGTGACTGCTACTTGGCGATCCTTTTTTGGGTTTATGGGTTCG
AACTAATACGAAGGCGTCCCGCCCGCCTTCCTTTTCAAGTAAGATGCGTA
CATCGATGATCCCGAAAGTGCAATGAATCAACGCGGATTTGGGACTATAC
TTTTTCACAGGTTATTATTCGGTGATTGGATCATTGTCAGTCATAGACGA
AGTCGCTGTAGGTATAAGGGGCTCGTTGAAGAAGATGTATCGCTCCGAGC
AAGACATGCACCCCGGTTCCGCCCCCGCCAACGGGGCTCCCTGTTATTTT
CTCCGTTTTATACATGTGGTTTCTCCGTTTTATACGCGTACTTTTAGAAT
CAACCATCCACCCATGTTCGATTTACGGGCTGTTGTATTTTGCATAGAGA
GTAGGGCAGCGATCAAGGTCTATCTGTAAACCCTGTATGGCAATACGAAG
GCAGCGCAGTTTGCGCTTTCAACATAACGGAACATTGTCGCGTAGTTCGT
GAGATATCGGTTAGGGGTGGTCATTTCGACCATTGGTCGCATGAATAGGG
CGATATGTTCATGGTAGAGCGGGCGGTTGGGTCGGTCGGGAAGGAAACGA
GGGCGGTCACGTATGTGGGATCCGATTTGTTGGTGAGGCGGGCGTGACAG
GGCAGGGGAAGTTGGGTGAGTTCATTCTGTTGAGCTCAGGAGGGGGCAAC
GTAGACCGAACCCGATCCCTTGCCCGTGATGCGTCGCCTCGCTCAACTCC
GGCACTGGCACCCAGTTGTCGAACAGTGTGGAGTCTTCACGAAGAAGCAA
GAAGGGGGCAGGTTCTTGGTGGAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9452:1215..5038+

>mRNA_Ecto-sp9_F_contig9452.17602.1 ID=mRNA_Ecto-sp9_F_contig9452.17602.1|Name=mRNA_Ecto-sp9_F_contig9452.17602.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9452:1215..5038+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCGATGACAATTTCTCTTCATTCCCGACTTGCGTGTTGAAAGGGCG
AGCTCACTTTCATCACGACCTACAGCGGCTGCTGGGAAAGGCCAAGATGT
GCGATGACAATTTCTCTTCATTCCCGACTTGCGTGTTGAAAGGGCGAGCT
CACTTTCATCACGACCTACAGCGGCTGCTGGGAAAGGCCAAGTGGCGGGC
TTTCAAACGATCTCGTGCGGCAGCTACCGGTGGTGAGAACGAGTGGTACG
ACAAGCAGTGGAAAGCTGGAGCCTGTCACGGTCAAGTGGCGGGCTTTCAA
ACGATCTCGTGCGGCAGCTACCGGTGGTGAGAACGAGTGGTACGACAAGC
AGTGGAAAGCTGGAGCCTGTCACGGTCAAGGAAAAATCCACTTTGCCGAT
AGCGGCGACATGCATGTCGGCTCCTGGGTGGGGAACTAAGAAAAATCCAC
TTTGCCGATAGCGGCGACATGCATGTCGGCTCCTGGGTGGGGAACTAA
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