prot_Ecto-sp9_F_contig9446.17598.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9446.17598.1
Unique Nameprot_Ecto-sp9_F_contig9446.17598.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length184
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P5_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.360e-86
Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0 
Query:    1 RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PEPPTPGSPEHIGWMKRMQKKMEAVKSALMGKGKAPKATPTGGKG 173
            RFHPLCGAVLTAETQSSSEGK WKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHK CHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PEPPTPGSPEHIGWMKRMQKKMEAVKSA MGKGKAPKATPTGG+G
Sbjct:  337 RFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKDCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKMEAVKSAFMGKGKAPKATPTGGRG 510
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BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.590e-57
Identity = 138/164 (84.15%), Postives = 140/164 (85.37%), Query Frame = 0 
Query:    1 RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGGIDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PEPPTPGSPEHIGWMKRMQKKMEAVKSALMGKG 161
            RFHPLCGAVLTAETQSSSEGK WKGLGADMTIQCDEHKHKA +               A CPTYYHKGCHDPPIPD+TGEKWWCATCTAALA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PEPPTPGSPEHIGWMKRMQKKMEAVKSA MGKG
Sbjct:  423 RFHPLCGAVLTAETQSSSEGKDWKGLGADMTIQCDEHKHKASQ---------------AGCPTYYHKGCHDPPIPDNTGEKWWCATCTAALAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPPTPGSPEHIGWMKRMQKKMEAVKSAFMGKG 571
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9446.17598.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
PHD-type1.360e-8697.13domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.590e-5784.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..126
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 44..88
e-value: 5.5E-8
score: 42.5
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 42..127
e-value: 1.3E-12
score: 50.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 45..89
e-value: 1.7E-8
score: 34.2
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 42..90
score: 8.644
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 45..87
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 32..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9446contigEcto-sp9_F_contig9446:1498..4319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9446.17598.1mRNA_Ecto-sp9_F_contig9446.17598.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9446 1497..4319 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9446.17598.1 ID=prot_Ecto-sp9_F_contig9446.17598.1|Name=mRNA_Ecto-sp9_F_contig9446.17598.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=184bp
RFHPLCGAVLTAETQSSSEGKGWKGLGADMTIQCDEHKHKADEPCAKCGG
IDGELVGCARCPTYYHKGCHDPPIPDDTGEKWWCATCTAALAMGGGESSE
DDEEQDEEEEEEQQEQEEGVQEEEEDDDPEPPTPGSPEHIGWMKRMQKKM
EAVKSALMGKGKAPKATPTGGKGGGGKAAKAKPE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR036427Bromodomain-like_sf
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD