prot_Ecto-sp9_F_contig942.17574.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig942.17574.1
Unique Nameprot_Ecto-sp9_F_contig942.17574.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length238
Homology
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BLAST of mRNA_Ecto-sp9_F_contig942.17574.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA9_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.960e-64
Identity = 167/187 (89.30%), Postives = 172/187 (91.98%), Query Frame = 0 
Query:   51 SSRRRNSTGKAGSPRKANKARCGGVSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEDSVGGEEGGGTMKRVSSSCKVSAMFAVKTEADMDMPDHQDHQTPDLIEPQQLVVEEEEEDYEHDNTVVDAEEYEPTDPVFGFMIDDILSSNFNVVPSRDSSSAAGVAVN 237
            SSRRRNSTGKAGSPRKA KARCGGVSKA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        ASEDS+G EEG GTMKRVSSSCKVSAMFAVKTEAD+DMPDHQDHQ PDLIEPQQLVVEEEEEDYEHD+  +DAE+YEPTDPVFGFMIDDILSSNFNVVPSRDSSSAAGVAVN
Sbjct:  387 SSRRRNSTGKAGSPRKAKKARCGGVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSA---ASEDSLGDEEGRGTMKRVSSSCKVSAMFAVKTEADIDMPDHQDHQAPDLIEPQQLVVEEEEEDYEHDDAFIDAEDYEPTDPVFGFMIDDILSSNFNVVPSRDSSSAAGVAVN 570
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig942.17574.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CCT1.960e-6489.30domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig942contigEcto-sp9_F_contig942:20805..21518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig942.17574.1mRNA_Ecto-sp9_F_contig942.17574.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig942 20805..21518 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig942.17574.1 ID=prot_Ecto-sp9_F_contig942.17574.1|Name=mRNA_Ecto-sp9_F_contig942.17574.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=238bp
AKVTGLGPWPEDEEEAGGDAESLSDSSEGDGGSPAARPTATRCRSGGAGK
SSRRRNSTGKAGSPRKANKARCGGVSKAAAAAAAAAAAAAAAAAAAVTSM
DEDEEEEEDEELDLDDDDGDSSTSAASEDSVGGEEGGGTMKRVSSSCKVS
AMFAVKTEADMDMPDHQDHQTPDLIEPQQLVVEEEEEDYEHDNTVVDAEE
YEPTDPVFGFMIDDILSSNFNVVPSRDSSSAAGVAVN*
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