mRNA_Ecto-sp9_F_contig9416.17569.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN79_9PHAE) HSP 1 Score: 679 bits (1751), Expect = 6.480e-244 Identity = 357/379 (94.20%), Postives = 364/379 (96.04%), Query Frame = 1
Query: 241 MRLSVLAEVAVVFCFSGGVLSPAAAEKSTPAPAATQRNLDNPSTTNGAXXXXXXXXWRGGEVEAKESWLSAVALKIKQHAPAAGSNRAKVAWTEYESRKAELTRNPDDPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWRKHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALEKDAGGARDRGTGSGRGGRRRTRGGRQGGKLVAADASSTPSSKSAAFVRSNLAADW 1377
MRL VLA VAVVFCFSG VLSPAAA+KSTPAPAATQRNLDNP TT+GAXXXXXXXX GGEVEAKESWLSAVALKIKQHAP+AGSNRAKVAW EYESR++EL RNPDDPRL LDTAEALLKWIRHTTNGNFPRVSAEG+VCDGDSPASRAIWRKHAPEALRLLKTGA HALDSGS DGGYDLAKYRFL AEASTYLSSAKGVLRAALQADA+AFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRC PTSAEEEDV DFFHAESRGALTALEKDAGGARDRGTGSGRGGRRRTRGGRQGGKLVAADASSTPSS SAAFVRSNLAADW
Sbjct: 1 MRLPVLAGVAVVFCFSGSVLSPAAAKKSTPAPAATQRNLDNPYTTSGAXXXXXXXXRGGGEVEAKESWLSAVALKIKQHAPSAGSNRAKVAWMEYESRRSELKRNPDDPRLHLDTAEALLKWIRHTTNGNFPRVSAEGKVCDGDSPASRAIWRKHAPEALRLLKTGATHALDSGSCDGGYDLAKYRFLQAEASTYLSSAKGVLRAALQADAVAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCTPTSAEEEDVRDFFHAESRGALTALEKDAGGARDRGTGSGRGGRRRTRGGRQGGKLVAADASSTPSSTSAAFVRSNLAADW 379
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB3_ECTSI) HSP 1 Score: 176 bits (446), Expect = 1.140e-50 Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1
Query: 1084 MGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALEKDAGGARDRGTGSGRGGRRRTRGGRQGGKLVAADASSTPSSKSAAFVRSNLAADW 1377
MGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAES GALTALEKDAGGARDRGTGSGRGGRRRTRGG QGGKLVAADASSTPSSKSAAFVRS LAADW
Sbjct: 1 MGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESLGALTALEKDAGGARDRGTGSGRGGRRRTRGGEQGGKLVAADASSTPSSKSAAFVRSKLAADW 98
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB6_9STRA) HSP 1 Score: 182 bits (462), Expect = 4.470e-50 Identity = 108/237 (45.57%), Postives = 140/237 (59.07%), Query Frame = 1
Query: 514 WTEYESRKAELTRNPDDPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWRKHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALEKDAG 1224
W Y K EL R D L+L TAEALL +IR T+GN R A+G+ DSP +R +WR HAPEAL LL+ + + G L + FL+AEA Y S + GV++AAL+ DA F+ N KPL++ HP++ GVGHTF+G+FYL APWPVH+ +KA+ HF AA C RN Y GL AL G A+A+F AL S EE D+GDF ++ R L L+ D G
Sbjct: 84 WRAYTLCKEELQRR-SDAALKLRTAEALLAYIRGKTDGNALR--ADGK--HSDSPENRRLWRTHAPEALSLLE-------EVKAEKGQEPL--HAFLYAEAFMYCSCSTGVVKAALKGDAFHFKSNAKPLLEQHPSFGNGVGHTFMGAFYLGAPWPVHSASKARQHFKAAQAAFPNCRRNQYYVGLEALRAGRRDEARAAFTTALATPVGSTEEGDIGDFLLSQCRLGLEQLDDDGG 306
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BBW8_CHRCT) HSP 1 Score: 113 bits (283), Expect = 2.300e-24 Identity = 75/219 (34.25%), Postives = 110/219 (50.23%), Query Frame = 1
Query: 562 DPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWRKHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALK-IDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALEK 1215
+P L L+ A +L +R TN N ++ D+P + +WR++ P AL L T A A L Y A+A + +S +GVL+AA+ + F+ N K LI P + GG+GH +LG+FYL+APWP+HN A+ H AA + + SR RN Y G++ G A+ F A+ S EED GDF E+ A+ E+
Sbjct: 133 EPTLCLEAAISLNTLMRIRTNSNTLHITRML-----DTPEHKKVWREYGPRALELA-TIAKRARPRDPEA----LCAY----ADAFFFSTSTRGVLKAAVSGSGLQFKANAKELIAKCPTHDGGIGHCYLGAFYLMAPWPLHNAQLAEQHLSAAHRLVPSR--RNSYYMGVLCFRCGRLREAQDYFAAAVAAPCNSPSEEDFGDFMAREASDAIRECER 335
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: 3-hydroxyisobutyryl-hydrolase (n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQZ8_9EUKA) HSP 1 Score: 112 bits (281), Expect = 3.230e-23 Identity = 79/216 (36.57%), Postives = 112/216 (51.85%), Query Frame = 1
Query: 562 DPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWRKHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKI-DSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTA 1206
D RL L A+AL +R TN N ++ D+P ++A+WR P AL L A A + D +A +A+A + +S KGVL AA+ + F+ N K LI P GGVGH +LG+F+L+APWP+ N +A+ H A +I SR RN Y G++ +G A+ F++AL K SA E D G F E++ AL A
Sbjct: 311 DGRLSLACAKALNAIMRIRTNSNTLHITRLL-----DTPENKAVWRSLGPRALEL----ATRAKKARPQDPEALVA-----YADAYFFANSVKGVLAAAVTGSGLEFKGNSKELIRRCPRADGGVGHCYLGAFFLMAPWPLCNPKRAEEHLSTAHRIVPSR--RNSYYMGVLHYRLGRPAEAERYFRQALSAKCASASEADFGGFMLREAKAALDA 510
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AFS2_9EUKA) HSP 1 Score: 97.4 bits (241), Expect = 2.160e-20 Identity = 56/131 (42.75%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 823 YLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKI-DSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALE 1212
+ +S KGVL AA + F+ N K LI +P GGVGH +LG+FYL+APWP+ N AK H AA KI SR RN Y G++ +GD A F+ A + S E D GDF E+ AL E
Sbjct: 21 FANSVKGVLTAATTGSGLKFKANAKELIARYPKLDGGVGHCYLGAFYLMAPWPIKNERLAKQHLHAAHKIVQSR--RNCYYLGVMYYRLGDRAAAAPFFRAATKAACNSPSERDFGDFILKEAADALRVCE 149
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VSG3_9DELT) HSP 1 Score: 98.6 bits (244), Expect = 1.900e-19 Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 1
Query: 556 PDDPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWRKHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFF 1176
P++ +L+ +AL +R T+GN P + D+ + IW + PE L L + + + LA Y +A Y SSA G++ A ++ A + N + + P Y G+GH F+G+FYL+APWP+ + KA+A +AA ++ RN+Y G+VA G+ A F+RA K S E D F
Sbjct: 82 PNELDAKLNLVDALNCVMRIRTHGNIPLIEGTN-----DTEPHKKIWGQMGPETLALAEE-----VYKARPNDIRALAAYT----DAYMYRSSAWGIVNAVVKGAADQYVENAEKMTKKFPKYDSGLGHAFMGAFYLLAPWPLSDEEKARARMEAAHRVGPNSKRNNYYLGVVAYREGEFQEAIGHFERAKSAKCLSPAERDFCAFM 274
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Match: Uncharacterized (protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9ESJ2_9DELT) HSP 1 Score: 87.0 bits (214), Expect = 1.720e-15 Identity = 64/229 (27.95%), Postives = 103/229 (44.98%), Query Frame = 1
Query: 538 AELTRNPDDPRLQLDTAEALLKWIRHTTNGNFPRVSAEGEVCDGDSPASRAIWR---KHAPEALRLLKTGAMHALDSGSSDGGYDLAKYRFLHAEASTYLSSAKGVLRAALQADAIAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESRGALTALEK 1215
AEL + P D L L +L +R T GN V+ D+PA++ IW K + + ++ L++ AEA YLSS+ G+++A + A +++N ++ VG + G+FY+VAPWP++++ KA+ HF A + R RN Y GL A + GD A+ F A T+ E D A+++ L + K
Sbjct: 67 AELAKKPGDLDLSLKLCTSLNAVMRAKTQGNLALVNGTS-----DTPANKRIWGELGKRSHDLCTAVQKARPKDLETALQT------------AEAYMYLSSSMGIIQAVMSGAANQYKKNADVILALDKRADDDVGDIYHGAFYIVAPWPMNDVKKAREHFAKAAAVAPRSVRNRYYVGLGAYKDGDFATAEREFVFARDNPCTTKSEIDFCSAIKAQAKLGLDEIGK 278 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9416.17569.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9416.17569.1 >prot_Ecto-sp9_F_contig9416.17569.1 ID=prot_Ecto-sp9_F_contig9416.17569.1|Name=mRNA_Ecto-sp9_F_contig9416.17569.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=380bp MRLSVLAEVAVVFCFSGGVLSPAAAEKSTPAPAATQRNLDNPSTTNGAAAback to top mRNA from alignment at Ecto-sp9_F_contig9416:2196..4438- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9416.17569.1 ID=mRNA_Ecto-sp9_F_contig9416.17569.1|Name=mRNA_Ecto-sp9_F_contig9416.17569.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2243bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9416:2196..4438- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9416:2196..4438- >mRNA_Ecto-sp9_F_contig9416.17569.1 ID=mRNA_Ecto-sp9_F_contig9416.17569.1|Name=mRNA_Ecto-sp9_F_contig9416.17569.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2280bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9416:2196..4438- (Ectocarpus species9 EcSCA_722f female)back to top |