mRNA_Ecto-sp9_F_contig9412.17566.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9412.17566.1
Unique NamemRNA_Ecto-sp9_F_contig9412.17566.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9412.17566.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9412contigEcto-sp9_F_contig9412:3387..4076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.8644812-CDS-Ecto-sp9_F_contig9412:3386..38121622931022.8644812-CDS-Ecto-sp9_F_contig9412:3386..3812Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9412 3387..3812 +
1692278997.3030794-CDS-Ecto-sp9_F_contig9412:3386..38121692278997.3030794-CDS-Ecto-sp9_F_contig9412:3386..3812Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9412 3387..3812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.8836439-UTR-Ecto-sp9_F_contig9412:3812..40761622931022.8836439-UTR-Ecto-sp9_F_contig9412:3812..4076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9412 3813..4076 +
1692278997.3134174-UTR-Ecto-sp9_F_contig9412:3812..40761692278997.3134174-UTR-Ecto-sp9_F_contig9412:3812..4076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9412 3813..4076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9412.17566.1prot_Ecto-sp9_F_contig9412.17566.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9412 3387..3812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9412.17566.1

>prot_Ecto-sp9_F_contig9412.17566.1 ID=prot_Ecto-sp9_F_contig9412.17566.1|Name=mRNA_Ecto-sp9_F_contig9412.17566.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=142bp
MGAREGGGEGCWLPPSAGWRRPDWGKGQHILLVEFCFVIVSVSRRLFHVS
VRGCSCSFAEAQMSGENVLWKLSSFICVRFSFLPCLLWGGWERGESRKYV
PPLFWHVTGPLFFFCIPARLRESAKVEGKTPRTVATNIPED*
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mRNA from alignment at Ecto-sp9_F_contig9412:3387..4076+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9412.17566.1 ID=mRNA_Ecto-sp9_F_contig9412.17566.1|Name=mRNA_Ecto-sp9_F_contig9412.17566.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9412:3387..4076+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCGCACGGGAGGGGGGGGGGGAGGGGTGCTGGTTGCCCCCCTCTGC
TGGATGGAGGAGGCCAGACTGGGGCAAAGGGCAGCATATCCTACTTGTCG
AATTCTGTTTTGTCATCGTTTCTGTCTCTCGTCGCTTGTTTCATGTGTCT
GTCCGTGGGTGTTCATGCTCCTTTGCGGAGGCACAGATGTCCGGCGAGAA
TGTTCTCTGGAAGCTTTCGTCATTTATTTGCGTTCGTTTTTCGTTTTTGC
CTTGCTTGTTGTGGGGGGGTTGGGAAAGAGGAGAGAGCAGAAAATACGTG
CCACCCCTCTTTTGGCATGTCACGGGGCCTCTTTTTTTTTTCTGCATCCC
CGCCCGCTTACGTGAGTCGGCGAAGGTAGAAGGGAAAACACCGAGAACGG
TAGCAACCAACATCCCGGAGGATTGAACGAACAATTATAACCTCTTATTT
TCCTTCTTCTACCGTAGTTTAGAGCTGAAATACGCACAAGTGGTCTCAGG
GTCACGGGCTAGGCTGAGCTGGGTGTTGTCTAGACGGCGAGGAATCGAAA
GTGCGCGGGGGCGGAATATGACACGAGAAATTTTCAGTCATGCCGTGAGC
ACAAAGTTTTGGCGAACGGGGGCAGGGTTGTGTATCGACAACGAGGGTTT
TGCTGTATCCCATGCGCGACAATGTTGGGGCAGCCGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9412:3387..4076+

>mRNA_Ecto-sp9_F_contig9412.17566.1 ID=mRNA_Ecto-sp9_F_contig9412.17566.1|Name=mRNA_Ecto-sp9_F_contig9412.17566.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9412:3387..4076+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCGCACGGGAGGGGGGGGGGGAGGGGTGCTGGTTGCCCCCCTCTGC
TGGATGGAGGAGGCCAGACTGGGGCAAAGGGCAGCATATCCTACTTGTCG
AATTCTGTTTTGTCATCGTTTCTGTCTCTCGTCGCTTGTTTCATGTGTCT
GTCCGTGGGTGTTCATGCTCCTTTGCGGAGGCACAGATGTCCGGCGAGAA
TGTTCTCTGGAAGCTTTCGTCATTTATTTGCGTTCGTTTTTCGTTTTTGC
CTTGCTTGTTGTGGGGGGGTTGGGAAAGAGGAGAGAGCAGAAAATACGTG
CCACCCCTCTTTTGGCATGTCACGGGGCCTCTTTTTTTTTTCTGCATCCC
CGCCCGCTTACGTGAGTCGGCGAAGGTAGAAGGGAAAACACCGAGAACGG
TAGCAACCAACATCCCGGAGGATTGAATGGGCGCACGGGAGGGGGGGGGG
GAGGGGTGCTGGTTGCCCCCCTCTGCTGGATGGAGGAGGCCAGACTGGGG
CAAAGGGCAGCATATCCTACTTGTCGAATTCTGTTTTGTCATCGTTTCTG
TCTCTCGTCGCTTGTTTCATGTGTCTGTCCGTGGGTGTTCATGCTCCTTT
GCGGAGGCACAGATGTCCGGCGAGAATGTTCTCTGGAAGCTTTCGTCATT
TATTTGCGTTCGTTTTTCGTTTTTGCCTTGCTTGTTGTGGGGGGGTTGGG
AAAGAGGAGAGAGCAGAAAATACGTGCCACCCCTCTTTTGGCATGTCACG
GGGCCTCTTTTTTTTTTCTGCATCCCCGCCCGCTTACGTGAGTCGGCGAA
GGTAGAAGGGAAAACACCGAGAACGGTAGCAACCAACATCCCGGAGGATT
GA
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