prot_Ecto-sp9_F_contig940.17561.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig940.17561.1
Unique Nameprot_Ecto-sp9_F_contig940.17561.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length153
Homology
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BLAST of mRNA_Ecto-sp9_F_contig940.17561.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 7.050e-67
Identity = 142/153 (92.81%), Postives = 142/153 (92.81%), Query Frame = 0 
Query:    1 MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRPSSSASSPSRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXX-EEGADGGDAGVGDGEKA 152
            MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPR         RSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXX EEGADGGDAGVGDGE A
Sbjct:    1 MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRXXXXXXXXXRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAEXXXXXXXXXXXXXXXXXXXEEGADGGDAGVGDGETA 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig940.17561.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.050e-6792.81protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..152
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 34..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..38
score: 0.812
NoneNo IPR availableTMHMMTMhelixcoord: 21..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig940contigEcto-sp9_F_contig940:24478..25493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig940.17561.1mRNA_Ecto-sp9_F_contig940.17561.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig940 23050..26145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig940.17561.1 ID=prot_Ecto-sp9_F_contig940.17561.1|Name=mRNA_Ecto-sp9_F_contig940.17561.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
MLSRRPTGLRGRSSCRTGRPLLALFLAALLVVLSPASAFLSSSPPRPSSS
ASSPSRSAKRAERLAPLHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSD
ANALFDVIEKNKKKAAEAAAAAAAAADGNGDDDGDEEGADGGDAGVGDGE
KA*
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