mRNA_Ecto-sp9_F_contig9390.17550.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9390.17550.1
Unique NamemRNA_Ecto-sp9_F_contig9390.17550.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.770e-70
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 396
            GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRV+NAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR
Sbjct:  311 GDSKCDGXXXXXXXXXXXXXXXNGATATNEDVELFTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVHNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 442
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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: HRDC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.830e-35
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  187 MGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR 396
            MGTKRGTDRVYNA MKPSFG+GKERGKTETFWKALFHQLVERQGFLEAVSFSS+NGGRSGTTYRLTR+GR
Sbjct:    1 MGTKRGTDRVYNATMKPSFGRGKERGKTETFWKALFHQLVERQGFLEAVSFSSENGGRSGTTYRLTRKGR 70
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BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Match: Werner (syndrome ATP-dependent helicase-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86CFF)

HSP 1 Score: 53.9 bits (128), Expect = 9.690e-6
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  103 FTGPARLVLQAVHDSGGRYGITVPIGLLMGTKRGTDRVYNAAMK-PSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGG 357
            F+  A L++ AV+  GGR+G+T+PI  L G+K  ++R+ +   K P FGKGK   KTE +WK L   L+ R G+LE        GG
Sbjct:  498 FSEDANLMMGAVNALGGRFGLTIPILFLRGSK--SNRLNDHHSKDPLFGKGKH--KTEAYWKNLGRLLI-RAGYLEECESKPFRGG 578
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9390.17550.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
ATP-dependent3.770e-7099.24DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
HRDC1.830e-3594.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Werner9.690e-641.86syndrome ATP-dependent helicase-like n=1 Tax=Ischn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9390contigEcto-sp9_F_contig9390:1385..3671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue1.8e-58
Seed eggNOG ortholog2880.D7G9E9
KEGG koko:K03654
KEGG Pathwayko03018,map03018
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0030145,GO:0031974,GO:0031981,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9390.17550.1prot_Ecto-sp9_F_contig9390.17550.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9390 1385..3671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.7783518-CDS-Ecto-sp9_F_contig9390:1384..14631622931019.7783518-CDS-Ecto-sp9_F_contig9390:1384..1463Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 1385..1463 -
1692278995.7325459-CDS-Ecto-sp9_F_contig9390:1384..14631692278995.7325459-CDS-Ecto-sp9_F_contig9390:1384..1463Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 1385..1463 -
1622931019.791485-CDS-Ecto-sp9_F_contig9390:2009..21571622931019.791485-CDS-Ecto-sp9_F_contig9390:2009..2157Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 2010..2157 -
1692278995.7481453-CDS-Ecto-sp9_F_contig9390:2009..21571692278995.7481453-CDS-Ecto-sp9_F_contig9390:2009..2157Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 2010..2157 -
1622931019.808973-CDS-Ecto-sp9_F_contig9390:2966..30451622931019.808973-CDS-Ecto-sp9_F_contig9390:2966..3045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 2967..3045 -
1692278995.7583115-CDS-Ecto-sp9_F_contig9390:2966..30451692278995.7583115-CDS-Ecto-sp9_F_contig9390:2966..3045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 2967..3045 -
1622931019.820912-CDS-Ecto-sp9_F_contig9390:3581..36711622931019.820912-CDS-Ecto-sp9_F_contig9390:3581..3671Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 3582..3671 -
1692278995.7694385-CDS-Ecto-sp9_F_contig9390:3581..36711692278995.7694385-CDS-Ecto-sp9_F_contig9390:3581..3671Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9390 3582..3671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9390.17550.1

>prot_Ecto-sp9_F_contig9390.17550.1 ID=prot_Ecto-sp9_F_contig9390.17550.1|Name=mRNA_Ecto-sp9_F_contig9390.17550.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=132bp
GDSKCDGCDVCDRTAAAAAASANGATATNEDVELFTGPARLVLQAVHDSG
GRYGITVPIGLLMGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQ
LVERQGFLEAVSFSSDNGGRSGTTYRLTRQGR
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mRNA from alignment at Ecto-sp9_F_contig9390:1385..3671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9390.17550.1 ID=mRNA_Ecto-sp9_F_contig9390.17550.1|Name=mRNA_Ecto-sp9_F_contig9390.17550.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2287bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9390:1385..3671- (Ectocarpus species9 EcSCA_722f female)
GGGGATTCGAAGTGCGACGGCTGCGACGTTTGTGACCGTACCGCTGCGGC
TGCGGCAGCATCCGCTAATGGCGCTACCGCGACCAACGAGGTGGGTGGTT
GCTTCCCTGTGGCAGGGCTGACATTGTCGGCATTTTTTGTTTTGTTTTGG
ACGCAACCACCCGTAGGCCATACAGCAGAAGTACAGCAGTGGGGCCCCCG
CAGTGTGCTGGTACGTGCCCGCCGAACACACTGATATGCCGGGTGACCAA
AGCGCCACTATTCAGAATCGTCCCAAATACTAAAAAAATGTATTTGGTGT
GCCATATTCCTGGGGGCTGGCTCTTGCTTCTCCCTGAGATTTTACCGCAT
GCACTTCTGCAGTGTACATACCAAGTGCTCGTGATAGCCTATCGGCGTAT
GTAGTTCTTTGCTGCGGCGTGAGTGTCTCTTTCGAGAGGGCGGGGCGGCA
CGACTGCGGCTCTTCGAAGCCAATCGGAACTGCTACCGCTCTTGCGTGTT
TCTGCGGTACTGTATTCATTCAACGTGCCTGTGGTATGATGCATACCACG
CCTATGTACAATTGTTGACATGACCCAAGCGTTTGTCGCGCGACGTCGTC
TTGACCTTCACCGCCGCTTCGCACAGGACGTCGAGCTGTTCACCGGCCCG
GCTAGGCTGGTGCTGCAGGCAGTGCACGACTCCGGAGGGCGGTACGGCAT
AACGGGTGAGGGGAGGGCAGCAAGAGGAGGGCAGGGAGGGCCTCTCGTTG
TCGTGTTTCACACCGGATGGGATACGCTTTGTGATGGGAGTGACTGGGAT
GGGATAGTAAGCCATTGTTATAGGAGTGTGGATGGGATGGACTGCTGTGC
CGATTACGTCGCTGAACCAGGCCTGTTTGTCGTCTTCGCCGCCGGACAAA
GTACTGTGCCGACCACACCCTGCTACATATTATAGTATTCCTGTGATACC
TGCGTTTTGCGTACTCTTACGCATACTACTGTGCTATTTTGTCTACTGTG
CTTGCCTAGTGGTGTGACGTGTTTGGCGGCCTCGCCGTTGGCTGCAACTT
TTACGCGATAGAAGGTGGTGTGACAGCATATGCATCCACGTACGTATAGT
CGGCGTAACTTGTAGGGCACCCGCGACTACGCCACAGAAAAGTGGTTTGA
CGGCATACCTCCGCGTGCGTTGCTTGGCGTAGCATGTTAGAGCACCCGCC
GGTGTGAGATTTATCCGCGTCACCCCCTTCGCATCTTAACAAGCGGATTC
GTCCACATAAGTAGAGAGACGGCATCCGTCCGTCCTCCTCCATGGAAAGA
GGCCCCCGTGGAAAGCACCTTTGTGAAAGGCAGGACTACATAAGCTTAAG
ACCGTCTGCGTGCTCCCTCAACAACGTACTTTTGTCAAGTCCTGCGTTTG
TTGGGTTGCTACTCGTTTGGTGAAGGTGCGAGAATACCATCTAAGTTGCC
CGCACGCACATGATGCATGCATACACACACACACACGACCCGTTTTTTTT
TTTTCGGTCTTAAGTGCCGATCGGTCTGCTGATGGGGACCAAGAGGGGAA
CGGACCGGGTGTACAACGCCGCCATGAAGCCATCGTTCGGCAAGGGCAAA
GAGAGAGGCAAGACGGAGACGTTCTGGAAGGCCTTGTTCCACCAACTTGT
CGAGAGACAGGGGTGAGTAGTGCGATCGCGCGCCTCAGGCGTGTGAACAA
ACGGCGCCTTGCTCATCTTGGCCAGATTGAGTCGGGCAAGCGGCGTCGTC
GTGTCGTCAATTCATTGGGCGGCGCCGTCAAACGCGGTCGTCGAAGCGAT
GGCAGGGTCCACGGCATCGTACATGGGTTATGTCCCCCTGAGCCCGTGGT
TCTCTTTGGAAGAAGTCAGATGACTTTTTGAGTGTTTTGTGTTGTGAGTG
TTTGAAGTCCCGCCGCATCGTATCAAACCCTTTTGATCTTTACGTGGTGA
TGGTCGTGCCCCCCACCCTTCCCGTATGATGATTTTGGTGTTGTAATTTC
TGCTTTTTGCTGTTCGTGTGGTGCTCTCACTGCTGAAGTTGGCGTGGTTG
TAGATAGTAGTCCCGGTGCTGTTGCTTCCCTGTCCCTTCCGTGTATCGAT
TTTGTTGCTGTACTTTACATACCAGGTACTGCTGTTTGTGTACCATATTG
TTCTCGCGGCTGAAGTTGGTATGGTTATTGATAGATTCTGGTGCTGGTGC
TGTCGCAGGTTCCTTGAAGCGGTGTCGTTCTCGAGTGACAACGGCGGGCG
GAGCGGGACGACCTACCGCTTGACCCGCCAGGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9390:1385..3671-

>mRNA_Ecto-sp9_F_contig9390.17550.1 ID=mRNA_Ecto-sp9_F_contig9390.17550.1|Name=mRNA_Ecto-sp9_F_contig9390.17550.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9390:1385..3671- (Ectocarpus species9 EcSCA_722f female)
GGGGATTCGAAGTGCGACGGCTGCGACGTTTGTGACCGTACCGCTGCGGC
TGCGGCAGCATCCGCTAATGGCGCTACCGCGACCAACGAGGGGGATTCGA
AGTGCGACGGCTGCGACGTTTGTGACCGTACCGCTGCGGCTGCGGCAGCA
TCCGCTAATGGCGCTACCGCGACCAACGAGGACGTCGAGCTGTTCACCGG
CCCGGCTAGGCTGGTGCTGCAGGCAGTGCACGACTCCGGAGGGCGGTACG
GCATAACGGGACGTCGAGCTGTTCACCGGCCCGGCTAGGCTGGTGCTGCA
GGCAGTGCACGACTCCGGAGGGCGGTACGGCATAACGGTGCCGATCGGTC
TGCTGATGGGGACCAAGAGGGGAACGGACCGGGTGTACAACGCCGCCATG
AAGCCATCGTTCGGCAAGGGCAAAGAGAGAGGCAAGACGGAGACGTTCTG
GAAGGCCTTGTTCCACCAACTTGTCGAGAGACAGGGTGCCGATCGGTCTG
CTGATGGGGACCAAGAGGGGAACGGACCGGGTGTACAACGCCGCCATGAA
GCCATCGTTCGGCAAGGGCAAAGAGAGAGGCAAGACGGAGACGTTCTGGA
AGGCCTTGTTCCACCAACTTGTCGAGAGACAGGGGTTCCTTGAAGCGGTG
TCGTTCTCGAGTGACAACGGCGGGCGGAGCGGGACGACCTACCGCTTGAC
CCGCCAGGGGAGGGTTCCTTGAAGCGGTGTCGTTCTCGAGTGACAACGGC
GGGCGGAGCGGGACGACCTACCGCTTGACCCGCCAGGGGAGG
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