mRNA_Ecto-sp9_F_contig939.17549.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig939.17549.1
Unique NamemRNA_Ecto-sp9_F_contig939.17549.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X3_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 7.420e-128
Identity = 176/177 (99.44%), Postives = 177/177 (100.00%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREPPAARRHDYEDV 531
            RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVI+AAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREPPAARRHDYEDV
Sbjct:  148 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVIAAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREPPAARRHDYEDV 324          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.500e-43
Identity = 75/164 (45.73%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVA-EEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGF 489
            RAHHCR+C RC+ RMDHHCPW+NNC+G  NQK FILFL Y L ++ Y +GL   +F  C + +E C +++  T+     +LV+S  A++FT++ML NQ H V+ G+GTVDR+QRRRK           R LRW  + G G+KL W+ P D  + +     +LG+
Sbjct:  155 RAHHCRVCRRCIARMDHHCPWVNNCIGALNQKAFILFLAYTLLLSVYGLGLGAAYFYACESGDESCLEHTPTTSTFAPTLLVLSFGALLFTVTMLANQTHSVVKGVGTVDRVQRRRKRQPPHPLTHVERALRWRRVVGTGSKLRWLLPLDIAYSERDAPLLLGY 318          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS54_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.010e-38
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGF 489
            R+HHCR+CGRC+VRMDHHCPWMNNC+G  NQK+F LFL Y       A+ + L     C    +C  +  LT +   AV+VI+   ++F  SM+ NQ + ++TG+GT+DRM+RR +   +        PL W+D+FG  N L+W  P DP F   + +++LG+
Sbjct:  113 RSHHCRICGRCIVRMDHHCPWMNNCIGAKNQKHFFLFLIYASIQCVIALVVPLVRITTC--STHC--FPGLTTHFSIAVVVIALLVLIFVSSMIYNQVYAIMTGIGTIDRMKRRARTFHLM-------PLDWSDVFGMDNWLLWPVPIDPTFE--EEDQVLGY 262          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.410e-34
Identity = 70/169 (41.42%), Postives = 98/169 (57.99%), Query Frame = 1
Query:    7 HHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYV-----LAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREP 498
            HHCR+C RCV RMDHHCPWMNNC+G AN K+FILFL Y      LA+  +A+   L HF      +    +S +   L+R + V++ ++++F  SM++N   G++TG GT+DRM+R      + G   +  PL   D+FG G    W  P DP FR    + +LGF  P
Sbjct:  258 HHCRICDRCVSRMDHHCPWMNNCIGAANLKHFILFLIYTWIASGLALVVFALNYFLCHFFHRNVNDGTCQFSPVLQTLVRGMTVVAISSLLFVSSMIVNVAFGLVTGTGTIDRMKR---NAGINGDGAEPAPLHPEDVFGMGPVWTWPLPIDPVFR--DHDAVLGFSTP 421          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY7_HETAK)

HSP 1 Score: 126 bits (316), Expect = 1.300e-31
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRR--KEGRVRGGPEDF-RPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGF 489
            RAHHC  CGRC+VRMDHHC W+NNC+G  NQK+F+LFL Y+   + Y++  + YH + C    YC+ +S L+  L+ +V V+S  +++FT  MLL+Q H + TGLG VDRM  +   K    +   +   +PL   DI G      W  PT   F  P  ++ LG+
Sbjct:  177 RAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVC-RHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTF--PNEQQALGY 339          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3T6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.940e-31
Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    7 HHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFREPPAARRHDYED 528
            HHCR+C RCV RMDHHCPWMNNCVG  N K+FILFL Y    TG ++ L+++ +   + E     ++ +   L+RA+ VI   +++FT SML+N  +G+ITG GT+DR++++          E   P+    +FG      W  P DP F     ++I+G+  P    R    D
Sbjct:  214 HHCRICDRCVSRMDHHCPWMNNCVGAGNMKHFILFLGYTW--TGSSLALLIFAWNYFLCESEICVFNVVLVQLVRAMSVICVGSLLFTSSMLMNVTYGIITGTGTIDRLKKKATNTLYLSEDE---PVPLEVVFGIQGYWSWFLPIDPVFA--DFDKIMGYSTPQRLLREQMRD 380          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JB85_PHYPR)

HSP 1 Score: 119 bits (298), Expect = 2.060e-29
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAM--VFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGN---KLMWIFPTDPHFRKPQRERILGF 489
            RAHHC +C RCV++MDHHCPW+NNCVG+ N K+F+LF+FYV  ++ YA+ LV + + +C+ E  C  Y       IR V +I  A +  +FT+ M+ +Q+  + TG   +DR++         G   D   LR  ++FG  +    L W+ P +  F    + ++LG+
Sbjct:  109 RAHHCSICDRCVIKMDHHCPWVNNCVGLGNHKFFLLFIFYVFVLSAYALTLVFFRYAKCINES-CPTYGA-----IRVVCLILEAVLFGLFTMCMMCDQYSVITTGTTQIDRLK---------GESADNLGLR--EVFGGSDCKFSLHWLLPVNIWFPTSVKNQVLGY 259          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GCL9_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 2.140e-29
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAM--VFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGN---KLMWIFPTDPHFRKPQRERILGF 489
            RAHHC +C RCV++MDHHCPW+NNCVG+ N K+F+LF+FYV  ++ YA+ LV + + +C+ E  C  Y       IR V +I  A +  +FT+ M+ +Q+  + TG   +DR++         G   D   LR  ++FG  +    L W+ P +  F    + ++LG+
Sbjct:  129 RAHHCSICDRCVIKMDHHCPWVNNCVGLGNHKFFLLFIFYVFVLSAYALTLVFFRYAKCINES-CPTYGA-----IRVVCLILEAVLFGLFTMCMMCDQYSVITTGTTQIDRLK---------GETADNLGLR--EVFGGSDYKFSLHWLLPVNIWFPSSVKNQVLGY 279          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=6 Tax=Peronosporaceae TaxID=4777 RepID=G4YWS3_PHYSP)

HSP 1 Score: 119 bits (299), Expect = 2.140e-29
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAM--VFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGN---KLMWIFPTDPHFRKPQRERILGF 489
            RAHHC +C RCV++MDHHCPW+NNCVG+ N K+F+LF+FYV  ++ YA+ LV + + +C+ E  C  Y       IR V +I  A +  +FT+ M+ +Q+  + TG   +DR++         G   D   LR  ++FG  +    L W+ P +  F    + ++LG+
Sbjct:  129 RAHHCSICDRCVIKMDHHCPWVNNCVGLGNHKFFLLFIFYVFVLSAYALTLVFFRYAKCINES-CPTYGA-----IRVVCLILEAVLFGLFTMCMMCDQYSVITTGTTQIDRLK---------GEAADSLGLR--EVFGGADCKFSLNWLLPVNIWFPTSVKNQVLGY 279          
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK54_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.370e-29
Identity = 62/165 (37.58%), Postives = 100/165 (60.61%), Query Frame = 1
Query:    1 RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTAN-LIRAVLVISAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGFR 492
            R+HHCR+C RC+VRMD         +G  NQK+FILFL Y +    Y++ L+LY+F   V       Y+  TA+ ++ A+LVI+ A ++F  +M+ NQ + ++TG+GT+DRM++R  +G       +F P+ W D+FG     M++ PTD  +R     R++G++
Sbjct:  113 RSHHCRICNRCIVRMDXXXXXXXXXIGANNQKHFILFLLYTIIECVYSLSLILYNFTHGVT------YANSTASAMVIALLVIALATLLFVSTMMYNQIYAIVTGIGTIDRMRKRGPKG-------NFAPVPWVDVFGVDPWPMYLLPTDVKYR--DFHRVMGYK 262          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig939.17549.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Palmitoyltransferase7.420e-12899.44n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X3_ECTSI[more]
Palmitoyltransferase4.500e-4345.73n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Y... [more]
Palmitoyltransferase2.010e-3842.94n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID... [more]
Palmitoyltransferase1.410e-3441.42n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4... [more]
Palmitoyltransferase1.300e-3141.57n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7... [more]
Palmitoyltransferase3.940e-3138.51n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=... [more]
Palmitoyltransferase2.060e-2936.90n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=... [more]
Palmitoyltransferase2.140e-2936.90n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GCL9_P... [more]
Palmitoyltransferase2.140e-2936.90n=6 Tax=Peronosporaceae TaxID=4777 RepID=G4YWS3_PH... [more]
Palmitoyltransferase3.370e-2937.58n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig939contigEcto-sp9_F_contig939:26286..26819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.9
Seed ortholog evalue3.3e-100
Seed eggNOG ortholog2880.D7G6X3
KEGG koko:K20029
KEGG TC9.B.37.2
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size534
Cds size534
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.73794-CDS-Ecto-sp9_F_contig939:26285..268191622931019.73794-CDS-Ecto-sp9_F_contig939:26285..26819Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 26286..26819 -
1692278995.7175093-CDS-Ecto-sp9_F_contig939:26285..268191692278995.7175093-CDS-Ecto-sp9_F_contig939:26285..26819Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig939 26286..26819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig939.17549.1prot_Ecto-sp9_F_contig939.17549.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig939 26286..26819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig939.17549.1

>prot_Ecto-sp9_F_contig939.17549.1 ID=prot_Ecto-sp9_F_contig939.17549.1|Name=mRNA_Ecto-sp9_F_contig939.17549.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
RAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIG
LVLYHFVECVAEEYCDDYSTLTANLIRAVLVISAAAMVFTLSMLLNQFHG
VITGLGTVDRMQRRRKEGRVRGGPEDFRPLRWADIFGDGNKLMWIFPTDP
HFRKPQRERILGFREPPAARRHDYEDV*
back to top

mRNA from alignment at Ecto-sp9_F_contig939:26286..26819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig939.17549.1 ID=mRNA_Ecto-sp9_F_contig939.17549.1|Name=mRNA_Ecto-sp9_F_contig939.17549.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:26286..26819- (Ectocarpus species9 EcSCA_722f female)
AGAGCCCACCACTGCCGGCTCTGTGGCCGCTGCGTAGTGAGAATGGACCA CCATTGCCCGTGGATGAACAACTGCGTGGGGATTGCAAACCAGAAGTACT TCATCCTATTCCTCTTCTACGTGCTGGCGGTCACGGGGTACGCGATCGGC CTCGTGCTGTATCACTTCGTAGAGTGCGTGGCGGAGGAGTACTGCGACGA CTACAGCACCCTCACGGCGAACTTGATCCGAGCGGTGCTGGTGATTTCCG CCGCGGCAATGGTCTTCACGCTCAGCATGCTGCTGAACCAGTTCCACGGA GTCATCACGGGTCTGGGCACGGTAGACAGGATGCAGCGCAGGAGAAAAGA GGGGAGAGTCAGGGGGGGACCCGAGGACTTCCGCCCCTTGCGTTGGGCCG ACATCTTCGGAGACGGGAACAAGCTCATGTGGATTTTCCCCACCGACCCG CACTTCCGCAAGCCCCAGAGAGAACGAATCCTTGGCTTCCGGGAGCCTCC TGCTGCCCGAAGGCACGATTACGAGGACGTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig939:26286..26819-

>mRNA_Ecto-sp9_F_contig939.17549.1 ID=mRNA_Ecto-sp9_F_contig939.17549.1|Name=mRNA_Ecto-sp9_F_contig939.17549.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig939:26286..26819- (Ectocarpus species9 EcSCA_722f female)
AGAGCCCACCACTGCCGGCTCTGTGGCCGCTGCGTAGTGAGAATGGACCA
CCATTGCCCGTGGATGAACAACTGCGTGGGGATTGCAAACCAGAAGTACT
TCATCCTATTCCTCTTCTACGTGCTGGCGGTCACGGGGTACGCGATCGGC
CTCGTGCTGTATCACTTCGTAGAGTGCGTGGCGGAGGAGTACTGCGACGA
CTACAGCACCCTCACGGCGAACTTGATCCGAGCGGTGCTGGTGATTTCCG
CCGCGGCAATGGTCTTCACGCTCAGCATGCTGCTGAACCAGTTCCACGGA
GTCATCACGGGTCTGGGCACGGTAGACAGGATGCAGCGCAGGAGAAAAGA
GGGGAGAGTCAGGGGGGGACCCGAGGACTTCCGCCCCTTGCGTTGGGCCG
ACATCTTCGGAGACGGGAACAAGCTCATGTGGATTTTCCCCACCGACCCG
CACTTCCGCAAGCCCCAGAGAGAACGAATCCTTGGCTTCCGGGAGCCTCC
TGCTGCCCGAAGGCACGATTACGAGGACGTTTGAAGAGCCCACCACTGCC
GGCTCTGTGGCCGCTGCGTAGTGAGAATGGACCACCATTGCCCGTGGATG
AACAACTGCGTGGGGATTGCAAACCAGAAGTACTTCATCCTATTCCTCTT
CTACGTGCTGGCGGTCACGGGGTACGCGATCGGCCTCGTGCTGTATCACT
TCGTAGAGTGCGTGGCGGAGGAGTACTGCGACGACTACAGCACCCTCACG
GCGAACTTGATCCGAGCGGTGCTGGTGATTTCCGCCGCGGCAATGGTCTT
CACGCTCAGCATGCTGCTGAACCAGTTCCACGGAGTCATCACGGGTCTGG
GCACGGTAGACAGGATGCAGCGCAGGAGAAAAGAGGGGAGAGTCAGGGGG
GGACCCGAGGACTTCCGCCCCTTGCGTTGGGCCGACATCTTCGGAGACGG
GAACAAGCTCATGTGGATTTTCCCCACCGACCCGCACTTCCGCAAGCCCC
AGAGAGAACGAATCCTTGGCTTCCGGGAGCCTCCTGCTGCCCGAAGGCAC
GATTACGAGGACGTTTGA
back to top