prot_Ecto-sp9_F_contig939.17546.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig939.17546.1
Unique Nameprot_Ecto-sp9_F_contig939.17546.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length290
Homology
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 3.920e-178
Identity = 277/289 (95.85%), Postives = 280/289 (96.89%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAATSASLDAXXXXXXXXXXXXXXXXXXXXXXXXTPTTGGMTKTLAATKPTR 289
            M+FPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPG PAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYY+MEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEA TSASLDA XXXXXXXXXXXXXXXXXX     TPTTGGMTKTLAATKPTR
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAAXXXXXXXXXXXXXXXXXX-----TPTTGGMTKTLAATKPTR 284          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 5.340e-103
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 150
            MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPG PAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYY+MEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.010e-46
Identity = 97/216 (44.91%), Postives = 127/216 (58.80%), Query Frame = 0
Query:    8 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGV-DPREGLLNLTGLEFMLVELPPEMSFLP-PGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGEG 220
            ED  Q SF D +WL+ + LGPE A+DYFALSPFYD+  NNE CRMQG+ D    +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV+ +YY+M+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.590e-29
Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPP--EMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 172
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML ++PP  E   LP GH  P       LF++ KQ R S + V  QA+YY+++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGH-EPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 120 bits (302), Expect = 3.850e-29
Identity = 77/219 (35.16%), Postives = 123/219 (56.16%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            M+    A+D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELL-------------PNAAKQLPQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (292), Expect = 8.040e-28
Identity = 74/211 (35.07%), Postives = 117/211 (55.45%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVG1_PHYPA)

HSP 1 Score: 112 bits (281), Expect = 7.650e-27
Identity = 74/201 (36.82%), Postives = 104/201 (51.74%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 212
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V  QA YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G     + +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:    9 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTG-----EADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 176          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JVT5_PHYPA)

HSP 1 Score: 113 bits (282), Expect = 2.990e-26
Identity = 76/206 (36.89%), Postives = 106/206 (51.46%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQK-----EAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 212
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V  QA YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G D   +K     +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:   17 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTGTDNENEKVVGEADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 194          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 3.050e-26
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 152
            M+  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Match: Mediator (of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 110 bits (276), Expect = 3.540e-26
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 166
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig939.17546.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mediator3.920e-17895.85of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator5.340e-10398.00of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator1.010e-4644.91of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator1.590e-2944.72of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator3.850e-2935.16of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator8.040e-2835.07of RNA polymerase II transcription subunit 6 n=15 ... [more]
Mediator7.650e-2736.82of RNA polymerase II transcription subunit 6 (Frag... [more]
Mediator2.990e-2636.89of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator3.050e-2640.26of RNA polymerase II transcription subunit 6 n=1 T... [more]
Mediator3.540e-2638.61of RNA polymerase II transcription subunit 6 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 14..156
e-value: 3.1E-38
score: 130.6
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..267
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 6..152
e-value: 4.9E-35
score: 122.1
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig939contigEcto-sp9_F_contig939:5417..9595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig939.17546.1mRNA_Ecto-sp9_F_contig939.17546.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig939 5355..9879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig939.17546.1 ID=prot_Ecto-sp9_F_contig939.17546.1|Name=mRNA_Ecto-sp9_F_contig939.17546.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=290bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQC
RMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGHPAPAGPQPRRLFVIK
KQVRKSPSSVEVQAIYYMMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAATSASLDAASA
AATSTAATSTMATSTAATSSATPTTGGMTKTLAATKPTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007018Mediator_Med6
IPR038566Med6_sf