mRNA_Ecto-sp9_F_contig9387.17543.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9387.17543.1
Unique NamemRNA_Ecto-sp9_F_contig9387.17543.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9387.17543.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.750e-36
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = -1 
Query:   94 APTCLLGDLLPVDAAVPLGRLESGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 300
            APTCLLGDLLPVDAAVPLGRLE GAEHGATVRLTAARAGLARLSSLCLRDALTGSVY PSCPYEVFVEG
Sbjct:  325 APTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSCPYEVFVEG 393
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BLAST of mRNA_Ecto-sp9_F_contig9387.17543.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.510e-34
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = -1 
Query:   94 PTCLLGDLLPVDAAVPLGRLESGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 297
            PTCLLGDLLPVDAAVPLGRLE GAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG
Sbjct:  652 PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9387.17543.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.750e-3697.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.510e-3498.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9387contigEcto-sp9_F_contig9387:4829..5194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.9334304-CDS-Ecto-sp9_F_contig9387:4828..51941622931018.9334304-CDS-Ecto-sp9_F_contig9387:4828..5194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9387 4829..5194 +
1692278995.3264983-CDS-Ecto-sp9_F_contig9387:4828..51941692278995.3264983-CDS-Ecto-sp9_F_contig9387:4828..5194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9387 4829..5194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9387.17543.1prot_Ecto-sp9_F_contig9387.17543.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9387 4829..5194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9387.17543.1

>prot_Ecto-sp9_F_contig9387.17543.1 ID=prot_Ecto-sp9_F_contig9387.17543.1|Name=mRNA_Ecto-sp9_F_contig9387.17543.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
NGTRTRRTRLQPTVTDVRPVRALLLLYSLPLPLHEHLVRARRDVDRPGQR
VPEAEARQPGQARPRRREPDRRPVLRAALQPAEGHRRVHRQEVPEEARRR
CCRRRHRCCRCGSGGLGGLSW*
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mRNA from alignment at Ecto-sp9_F_contig9387:4829..5194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9387.17543.1 ID=mRNA_Ecto-sp9_F_contig9387.17543.1|Name=mRNA_Ecto-sp9_F_contig9387.17543.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9387:4829..5194+ (Ectocarpus species9 EcSCA_722f female)
AATGGCACACGCACGAGACGCACACGTCTCCAACCAACCGTCACTGACGT
TCGGCCGGTTCGTGCACTACTACTACTGTACAGCCTTCCTCTACCCCTCC
ACGAACACCTCGTAAGGGCAAGAAGGGACGTAGACCGACCCGGTCAGCGC
GTCCCTGAGGCAGAGGCTCGACAGCCGGGCCAGGCCCGCCCTCGCCGCCG
TGAGCCTGACCGTCGCCCCGTGCTCCGCGCCGCTCTCCAGCCGGCCGAGG
GGCACCGCCGCGTCCACCGGCAGGAGGTCCCCGAGGAGGCACGTCGGCGC
TGCTGCCGCCGCCGCCACCGCTGCTGCCGCTGTGGCAGCGGCGGCTTGGG
CGGTCTCTCGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9387:4829..5194+

>mRNA_Ecto-sp9_F_contig9387.17543.1 ID=mRNA_Ecto-sp9_F_contig9387.17543.1|Name=mRNA_Ecto-sp9_F_contig9387.17543.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9387:4829..5194+ (Ectocarpus species9 EcSCA_722f female)
AATGGCACACGCACGAGACGCACACGTCTCCAACCAACCGTCACTGACGT
TCGGCCGGTTCGTGCACTACTACTACTGTACAGCCTTCCTCTACCCCTCC
ACGAACACCTCGTAAGGGCAAGAAGGGACGTAGACCGACCCGGTCAGCGC
GTCCCTGAGGCAGAGGCTCGACAGCCGGGCCAGGCCCGCCCTCGCCGCCG
TGAGCCTGACCGTCGCCCCGTGCTCCGCGCCGCTCTCCAGCCGGCCGAGG
GGCACCGCCGCGTCCACCGGCAGGAGGTCCCCGAGGAGGCACGTCGGCGC
TGCTGCCGCCGCCGCCACCGCTGCTGCCGCTGTGGCAGCGGCGGCTTGGG
CGGTCTCTCGTGGTAGAATGGCACACGCACGAGACGCACACGTCTCCAAC
CAACCGTCACTGACGTTCGGCCGGTTCGTGCACTACTACTACTGTACAGC
CTTCCTCTACCCCTCCACGAACACCTCGTAAGGGCAAGAAGGGACGTAGA
CCGACCCGGTCAGCGCGTCCCTGAGGCAGAGGCTCGACAGCCGGGCCAGG
CCCGCCCTCGCCGCCGTGAGCCTGACCGTCGCCCCGTGCTCCGCGCCGCT
CTCCAGCCGGCCGAGGGGCACCGCCGCGTCCACCGGCAGGAGGTCCCCGA
GGAGGCACGTCGGCGCTGCTGCCGCCGCCGCCACCGCTGCTGCCGCTGTG
GCAGCGGCGGCTTGGGCGGTCTCTCGTGGTAG
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