mRNA_Ecto-sp9_F_contig9387.17542.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9387.17542.1
Unique NamemRNA_Ecto-sp9_F_contig9387.17542.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9387.17542.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9387contigEcto-sp9_F_contig9387:4412..4787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.8700838-UTR-Ecto-sp9_F_contig9387:4411..44871622931018.8700838-UTR-Ecto-sp9_F_contig9387:4411..4487Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9387 4412..4487 +
1692278995.3045812-UTR-Ecto-sp9_F_contig9387:4411..44871692278995.3045812-UTR-Ecto-sp9_F_contig9387:4411..4487Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9387 4412..4487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.884278-CDS-Ecto-sp9_F_contig9387:4487..47871622931018.884278-CDS-Ecto-sp9_F_contig9387:4487..4787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9387 4488..4787 +
1692278995.3154473-CDS-Ecto-sp9_F_contig9387:4487..47871692278995.3154473-CDS-Ecto-sp9_F_contig9387:4487..4787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9387 4488..4787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9387.17542.1prot_Ecto-sp9_F_contig9387.17542.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9387 4488..4787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9387.17542.1

>prot_Ecto-sp9_F_contig9387.17542.1 ID=prot_Ecto-sp9_F_contig9387.17542.1|Name=mRNA_Ecto-sp9_F_contig9387.17542.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MHPGMHIHVDNIGGPVDRVHGRTGCPSWSRVRSAFLRPPRTNHNARLIGN
IHYCRASPCYIASGQRTNHGARHFLRANYHGRLPLPPTNVHSKGLGCFEK
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mRNA from alignment at Ecto-sp9_F_contig9387:4412..4787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9387.17542.1 ID=mRNA_Ecto-sp9_F_contig9387.17542.1|Name=mRNA_Ecto-sp9_F_contig9387.17542.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=376bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9387:4412..4787+ (Ectocarpus species9 EcSCA_722f female)
CACCATATCAACAGATGATCATTAATCGAGAGCAACACCGAGAGGAGCGG
CTGCTGCGTACTTGCACTACTGTAGTATGCATCCTGGCATGCATATACAT
GTAGACAACATAGGTGGACCGGTGGACCGTGTGCATGGTCGCACGGGCTG
CCCGTCCTGGAGTCGTGTGCGTTCGGCCTTTCTGCGGCCTCCGAGGACGA
ACCACAACGCCCGGTTGATCGGCAACATACACTACTGTAGAGCCTCACCA
TGTTACATCGCCTCCGGCCAGCGTACCAATCATGGCGCCCGCCATTTTTT
ACGCGCGAACTACCATGGACGACTCCCCCTTCCCCCCACGAACGTCCATT
CGAAGGGGTTGGGTTGTTTCGAAAAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9387:4412..4787+

>mRNA_Ecto-sp9_F_contig9387.17542.1 ID=mRNA_Ecto-sp9_F_contig9387.17542.1|Name=mRNA_Ecto-sp9_F_contig9387.17542.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9387:4412..4787+ (Ectocarpus species9 EcSCA_722f female)
ATGCATCCTGGCATGCATATACATGTAGACAACATAGGTGGACCGGTGGA
CCGTGTGCATGGTCGCACGGGCTGCCCGTCCTGGAGTCGTGTGCGTTCGG
CCTTTCTGCGGCCTCCGAGGACGAACCACAACGCCCGGTTGATCGGCAAC
ATACACTACTGTAGAGCCTCACCATGTTACATCGCCTCCGGCCAGCGTAC
CAATCATGGCGCCCGCCATTTTTTACGCGCGAACTACCATGGACGACTCC
CCCTTCCCCCCACGAACGTCCATTCGAAGGGGTTGGGTTGTTTCGAAAAA
ATGCATCCTGGCATGCATATACATGTAGACAACATAGGTGGACCGGTGGA
CCGTGTGCATGGTCGCACGGGCTGCCCGTCCTGGAGTCGTGTGCGTTCGG
CCTTTCTGCGGCCTCCGAGGACGAACCACAACGCCCGGTTGATCGGCAAC
ATACACTACTGTAGAGCCTCACCATGTTACATCGCCTCCGGCCAGCGTAC
CAATCATGGCGCCCGCCATTTTTTACGCGCGAACTACCATGGACGACTCC
CCCTTCCCCCCACGAACGTCCATTCGAAGGGGTTGGGTTGTTTCGAAAAA
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