mRNA_Ecto-sp9_F_contig9377.17537.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9377.17537.1
Unique NamemRNA_Ecto-sp9_F_contig9377.17537.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 727 bits (1877), Expect = 1.130e-262
Identity = 380/409 (92.91%), Postives = 389/409 (95.11%), Query Frame = 1
Query:   16 GELRSFHERLTKEKEQVRMNGEQLREKQLVFLRQQQTAAHSSQKLGAASGGSPQTSPRSTGRACVSPAADSVKEGGAGSSGRSGSAADAGALASQAAVGEGTTDSVGDEDENEISFSINALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLRKPVILLYPPAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDSRVSRSFALDGSRSFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSYD 1242
            GELRSFHERLTKEKEQ+RMNGEQLREKQLV LRQQQTAAHSSQKLGAASGGS QTSPRSTGRACVS AADSVKEGGAGSS RS SAADAGALASQAAVGE TTDSV DEDENEISFSI  LTGKQ+TIRAFPSETVLDVKKKVQDTQ IPCEQQRIIY GQQT+DDRTLRDCNIRNGSVAHLVLSLRKPVILLYPPAPVDI VAVELSPLWSFS+LYPKLQPRNLKQLAADYEAGSQ NVAGGQQCKWNVHAS  GSLKDLSTGREYPYLFWEADSSD RV+RSF LDGSRSFCVAG+AAGVFLDV LER+GLN RERCDMVTCWLP+LESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRG HAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVS+D
Sbjct:   45 GELRSFHERLTKEKEQLRMNGEQLREKQLVILRQQQTAAHSSQKLGAASGGSSQTSPRSTGRACVSSAADSVKEGGAGSSARSSSAADAGALASQAAVGEDTTDSVADEDENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLRKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ27_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 8.040e-81
Identity = 147/208 (70.67%), Postives = 151/208 (72.60%), Query Frame = 1
Query:  346 ENEISFSIN-ALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLRKPVILLYPPAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDSRVSRSFALDGSRSFCVAGDAAGVFLDVVLERVGLNARE 966
            ENEISFSIN  LTGK YT RAFPSETVLDV KKVQDTQ IPCEQQRII  GQQT+DDRTLRDCNIRNGSVAHLVLSLRKPVILLY  APVDI  A                         ADYEA     VAGGQQ KWNVHAS DGSLKDL+ GREYPYLFWEADSSD RVSRSF LDGS   CVAGDAAGV L V++ R G   RE
Sbjct:   20 ENEISFSINNTLTGKHYTTRAFPSETVLDVNKKVQDTQGIPCEQQRIIDVGQQTSDDRTLRDCNIRNGSVAHLVLSLRKPVILLYLTAPVDITPA-------------------------ADYEA----TVAGGQQFKWNVHASPDGSLKDLTIGREYPYLFWEADSSDGRVSRSFGLDGSSLMCVAGDAAGVVLWVLVLRQGRATRE 198          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J338_9AGAM)

HSP 1 Score: 182 bits (461), Expect = 1.570e-50
Identity = 117/321 (36.45%), Postives = 161/321 (50.16%), Query Frame = 1
Query:  367 INALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVD-IMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDS-----RVSR--------SFALDGSR-------SFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAEL------------DTAKIEELRSPAREGFVAVEWGGMNL 1224
            +  LTGK  T+    S+T+ +VK K+QD +  P EQQR+++ G+Q  DD TL D NI+     H V +LR  KPV+ L+PP P + I V + L+P WSFSALYP    R                  GGQ   W V A  DG+L D  TGRE  YLFWEA ++ +      VSR        +   D SR       S  +  D A  ++D VL  +GL+   RC  +T WLP L+  +   + F+    YE AA + + P+PDVT RVFM FRGV   +  L            D   ++  ++  +  F  +EWGGM +
Sbjct:    5 VKTLTGKTITLEVESSDTIANVKAKIQDKEGYPPEQQRLMFAGKQIEDDCTLGDYNIQKEYTIHFVSTLRGGKPVVYLFPPLPTNRIRVDLALAPAWSFSALYPSASVRP--------------TAGGGQSVAWIVDAKPDGTLSDRGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPVITPDNSTVIPFDKATGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFRGVEEAELTLWEGSAKGAHEWKDVVGVDIQKASDKNMFRVLEWGGMEV 311          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MJY2_9AGAM)

HSP 1 Score: 177 bits (449), Expect = 9.200e-49
Identity = 116/321 (36.14%), Postives = 163/321 (50.78%), Query Frame = 1
Query:  367 INALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVD-IMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDS-----RVSR--------SFALDGSR-------SFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAEL------------DTAKIEELRSPAREGFVAVEWGGMNL 1224
            +  LTGK+ TI    S+T+ +VK K+QD   +P +QQR+++ G+Q  D RTL D NI+  S   LV  LR  KPV+ L+PP P + + + + L+P WSFSALYP +  R     A D           GQ   W V A  DG+L D  TGRE  YLFWEA ++ +      VSR        +   D SR       S  +  D    ++D VL  +GL+   RC  +T WLP L+  +   + F+    YE AA + + P+PDVT RVFM FRGV   +  L            D   ++  ++  +  F  +EWGGM +
Sbjct:    5 VKTLTGKKTTIEVESSDTIDNVKAKIQDKDGVPPDQQRLLFAGKQMEDGRTLSDYNIQRESTVILVYRLRGGKPVVYLFPPLPTNNVRIDLALTPAWSFSALYPSVPVR---PTAGD-----------GQSVAWIVDAKPDGTLSDHGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVASTFDPSRPVITPDNSTVLPFDKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFRGVEEEELALWEGSPKGVHEWKDVVGVDVQKASDKNMFRVLEWGGMEV 311          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.910e-46
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 1
Query:  961 RERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSYD 1242
            RERCDMVT WLP+LESS FNVIYFV VERYE+AARLTI P PDVTIR+FMAFRG+ AYD ELDTAK+E+LR+P R+GFVAVEWGGMNLN VS+D
Sbjct:    2 RERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JUT6_9AGAM)

HSP 1 Score: 169 bits (427), Expect = 1.890e-44
Identity = 111/322 (34.47%), Postives = 162/322 (50.31%), Query Frame = 1
Query:  364 SINALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPV-DIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDS-----RVSRSF--------ALDGSR-------SFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAEL------------DTAKIEELRSPAREGFVAVEWGGMNL 1224
            +I + +GK+  +   P +T+ DVK K QD + +P +QQR+I+ G+Q  D RTL + +I+ G + H++  LR  KPVI L+PP    D+ V + L+  W FS LYP   P ++K             V GGQ   W V A  DG+L +  TGRE  YLFWEA +  +      VSR          A D SR       S  +  D    ++D VL  +GL+   RC  +T WLP L+  +   + F+   +YE AA + + P+PDVT RVFM FRG+   + +L            D   +   ++     F  +EWGGM +
Sbjct:  109 TIVSRSGKRTDVAYDPFDTIDDVKAKYQDKEGVPPDQQRLIFAGKQLEDGRTLSNYSIQRGDIIHMICRLRGGKPVIYLFPPVSTSDVRVDLALTSAWEFSVLYP---PTSIKST-----------VEGGQTIAWTVDAKPDGTLLEHGTGREVSYLFWEAHTKPALPLSPTVSRPGSPVQDAIEAFDPSRPIIAPTNSVVLPLDQVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQNQYESAAPMRVTPSPDVTTRVFMLFRGIEESNLDLWGGAVKGVGEWKDIVGVNVQKATDTNIFRVLEWGGMEV 416          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D1A5_9AGAR)

HSP 1 Score: 167 bits (423), Expect = 1.130e-43
Identity = 107/333 (32.13%), Postives = 160/333 (48.05%), Query Frame = 1
Query:  340 EDENEISFSINALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSD---------------SRVSRSFA-----LDGSRSFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAEL----------------DTAKIEELRSPAREGFVAVEWGGMNL 1224
            ED +    +I  L+GK + +    S+TV ++K KV+D      E QR+IY G+Q  DD TL  C I++G++ HLVL  R  KPVI LYPP+   +   + L P W FSA+YP +  +   Q               GQ+ +W V AS +G+LK+++T  E  YL+WEA+++                S V  +F      L+   S  +       +LD  L+ +GL+   R   +T WLP +   +   + F+    YE+AA L + PTPDV  R+FM F+GV   D E+                D   ++  R      F  +EWGGM +
Sbjct:  121 EDSDPYHVNIQGLSGKTFRVSCSRSDTVANLKAKVEDQDGTLPEDQRLIYAGRQLADDPTLAACGIQSGAMIHLVLRQRGGKPVIYLYPPSATRVSTKLSLVPEWEFSAIYPVVPAKTTPQ---------------GQELEWVVDASPNGTLKEVNTDLEVSYLYWEAETNTHNLLSPPPSPSLIPTSNVDETFVPNRATLNAKNSVLLEVKKITPYLDTSLKALGLHVEARTSFITYWLPSILKHKHVALRFLPQSAYERAAPLNLDPTPDVVARIFMLFKGVEEEDLEIWAEASEKTRIAVDFWKDVVGVDVDRLQDASLFRVIEWGGMEV 438          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (family protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=V2XEN0_MONRO)

HSP 1 Score: 166 bits (419), Expect = 3.140e-43
Identity = 116/339 (34.22%), Postives = 160/339 (47.20%), Query Frame = 1
Query:  316 GTTDSVGDEDENEISFSINALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEA------------------DSSDSRVSRSFALDGSRSFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYD----------AELDTAKIEEL------RSPAREGFVAVEWGGMNL 1224
            G+ D++  E+    +  I  LTGK   + A P ET+  +K K+QD   IP ++QR+I+ G+Q  D RTL D NI   S  HLVL  R  KPVI L  P   +  V + L P W FSA+YP              E G     + GQ  +W V    DG+L +LSTG +  YLFWEA                   SS+  +     L+ + S  +       +LD  L  +GL+   R   +T WLP L    +  + F+    YE AA L + P PDVT+R+FM FRGV A D          A+LD     E+      R+  ++ F  +EWGGM +
Sbjct:   97 GSADALHVENSKVYTLFIKTLTGKTIRLEAAPLETIDKIKVKIQDLNGIPPDEQRLIFAGKQLEDGRTLSDYNIEKNSTIHLVLMRRGGKPVIYLLSPCEQEARVQLSLVPQWEFSAIYP----------VVPIEQGC--FPSKGQSIEWLVKTHKDGNLTELSTGADVSYLFWEALTDPDSLQMSPPPSPRMGQSSECFIPNKPVLNSANSVVLPIGMIPQYLDKALLALGLHTEARTSFITYWLPSLLKHTYVALRFLPQAVYEPAAPLNVSPPPDVTMRIFMLFRGVCAEDVAEWHESVKKADLDVEMWREIVGVDIDRALDKDLFRVLEWGGMEV 423          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin-like (domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DIF9_9AGAR)

HSP 1 Score: 163 bits (412), Expect = 3.770e-43
Identity = 114/340 (33.53%), Postives = 160/340 (47.06%), Query Frame = 1
Query:  319 TTDSVGDEDENEISFSINALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEAD---------------SSDSRVSRSF-----ALDGSRSFCVAGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAYDAEL----------------DTAKIEELRSPAREGFVAVEWGGMNL 1224
            TT S GD+   EI   I  L G+   I    S+T+ +VK K+QD + IP +QQ++IY G+   D RTL D  +  G+  +LVL LR  KPVI LYPP    +   + L P W FSA+YP + P+N                  GQ+ +W V A  +G+LK++ TG E  YL+WEA+               SS   V  +F      L+ + S  +       +LD  L+ +GL+   R   +T WLP L    +  + F+    YE+A  L + PTPDV  R+FM FRGV     ++                D   I+  R      F  VEWGGM +
Sbjct:    6 TTSSRGDDPPYEI--MIKTLAGRPVRIECSSSDTIGEVKAKLQDREGIPPDQQKLIYVGKLLEDGRTLSDYGVPTGATLYLVLQLRGEKPVIYLYPPIATRVSTKLSLVPEWEFSAIYPVVPPKNTPH---------------GQEVEWVVDALPNGTLKEIITGLEVSYLYWEAETTIHNMLSPPASPLLSSTGIVVENFIPNRPTLNTTNSVLLEVGKITPYLDSSLKALGLHIEARTSFITHWLPPLLKHGYVALRFLPQSVYERATPLCLEPTPDVVARIFMLFRGVDGDSLDIWAEASERTKDAVEFWKDVVGIDVDRLQDASLFRVVEWGGMEV 328          
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Match: Ubiquitin (family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MML9_9AGAM)

HSP 1 Score: 160 bits (404), Expect = 3.620e-42
Identity = 114/321 (35.51%), Postives = 155/321 (48.29%), Query Frame = 1
Query:  367 INALTGKQYTIRAFPSETVLDVKKKVQDTQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVD-IMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQCKWNVHASADGSLKDLSTGREYPYLFWEADSSDS-----RVSR--------SFALDGSRSFCVAGDAAGV-------FLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGVHAY------DAELDTAK------IEELRSPAREGFVAVEWGGMNL 1224
            +  LTGK   +    S+TV +VK K+QD + I  E QR+I+ G+Q  D RTL D NI      H+V  LR  KPV+ L+PP P + I V + L+P WSFSALYP    R     A D           G    W V A  DG+L D  TGRE  YLFWEA ++ +      VSR        +   D SR      ++  +       ++D VL  +GL+   RC  +T WLP L+  +   + F+    YE AA + + P+PDVT RVFM FRGV         D   D  +      ++  +      F  +EWGGM +
Sbjct:    5 VKTLTGKTIWVEVETSDTVDNVKAKIQDKEGILPEVQRLIFAGKQMEDGRTLSDYNILKQRTIHVVTRLRGGKPVVYLFPPLPTNSIRVDLALTPAWSFSALYPSAPVR---PTAGD-----------GHSVAWIVDAKPDGTLSDHGTGREVSYLFWEAHTNPALPCSPAVSRPGSPVQEVAATFDPSRPVITPDNSTVLPFEKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFRGVDEPNIGAWGDVVKDVGEWKNIVGVDVQKVTDTSIFRVLEWGGMEV 311          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9377.17537.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquitin-like1.130e-26292.91domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Ubiquitin-like8.040e-8170.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Ubiquitin1.570e-5036.45family protein n=2 Tax=Ceratobasidium sp. AG-Ba Ta... [more]
Ubiquitin9.200e-4936.14family protein n=1 Tax=Ceratobasidium sp. AG-Ba Ta... [more]
Ubiquitin2.910e-4680.85fusion protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Ubiquitin1.890e-4434.47family protein n=2 Tax=Ceratobasidium sp. AG-Ba Ta... [more]
Ubiquitin-like1.130e-4332.13domain-containing protein n=1 Tax=Candolleomyces a... [more]
Ubiquitin3.140e-4334.22family protein n=2 Tax=Moniliophthora roreri TaxID... [more]
Ubiquitin-like3.770e-4333.53domain-containing protein n=1 Tax=Candolleomyces a... [more]
Ubiquitin3.620e-4235.51family protein n=1 Tax=Ceratobasidium sp. AG-Ba Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9377contigEcto-sp9_F_contig9377:646..4046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score731.5
Seed ortholog evalue2.2e-208
Seed eggNOG ortholog2880.D7G4B4
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-02_002050.1
Exons6
Model size1245
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9377.17537.1prot_Ecto-sp9_F_contig9377.17537.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9377 646..4046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.085378-CDS-Ecto-sp9_F_contig9377:645..8231622931018.085378-CDS-Ecto-sp9_F_contig9377:645..823Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 646..823 +
1692278994.8754072-CDS-Ecto-sp9_F_contig9377:645..8231692278994.8754072-CDS-Ecto-sp9_F_contig9377:645..823Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 646..823 +
1622931018.1008153-CDS-Ecto-sp9_F_contig9377:1132..13021622931018.1008153-CDS-Ecto-sp9_F_contig9377:1132..1302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 1133..1302 +
1692278994.8885248-CDS-Ecto-sp9_F_contig9377:1132..13021692278994.8885248-CDS-Ecto-sp9_F_contig9377:1132..1302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 1133..1302 +
1622931018.1130724-CDS-Ecto-sp9_F_contig9377:1535..19011622931018.1130724-CDS-Ecto-sp9_F_contig9377:1535..1901Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 1536..1901 +
1692278994.9048069-CDS-Ecto-sp9_F_contig9377:1535..19011692278994.9048069-CDS-Ecto-sp9_F_contig9377:1535..1901Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 1536..1901 +
1622931018.1259847-CDS-Ecto-sp9_F_contig9377:2200..24021622931018.1259847-CDS-Ecto-sp9_F_contig9377:2200..2402Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 2201..2402 +
1692278994.9185236-CDS-Ecto-sp9_F_contig9377:2200..24021692278994.9185236-CDS-Ecto-sp9_F_contig9377:2200..2402Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 2201..2402 +
1622931018.1404767-CDS-Ecto-sp9_F_contig9377:3302..35041622931018.1404767-CDS-Ecto-sp9_F_contig9377:3302..3504Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 3303..3504 +
1692278994.9292397-CDS-Ecto-sp9_F_contig9377:3302..35041692278994.9292397-CDS-Ecto-sp9_F_contig9377:3302..3504Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 3303..3504 +
1622931018.1557596-CDS-Ecto-sp9_F_contig9377:3919..40461622931018.1557596-CDS-Ecto-sp9_F_contig9377:3919..4046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 3920..4046 +
1692278994.941624-CDS-Ecto-sp9_F_contig9377:3919..40461692278994.941624-CDS-Ecto-sp9_F_contig9377:3919..4046Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9377 3920..4046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9377.17537.1

>prot_Ecto-sp9_F_contig9377.17537.1 ID=prot_Ecto-sp9_F_contig9377.17537.1|Name=mRNA_Ecto-sp9_F_contig9377.17537.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=415bp
MEPLQGELRSFHERLTKEKEQVRMNGEQLREKQLVFLRQQQTAAHSSQKL
GAASGGSPQTSPRSTGRACVSPAADSVKEGGAGSSGRSGSAADAGALASQ
AAVGEGTTDSVGDEDENEISFSINALTGKQYTIRAFPSETVLDVKKKVQD
TQDIPCEQQRIIYEGQQTNDDRTLRDCNIRNGSVAHLVLSLRKPVILLYP
PAPVDIMVAVELSPLWSFSALYPKLQPRNLKQLAADYEAGSQGNVAGGQQ
CKWNVHASADGSLKDLSTGREYPYLFWEADSSDSRVSRSFALDGSRSFCV
AGDAAGVFLDVVLERVGLNARERCDMVTCWLPRLESSRFNVIYFVEVERY
EQAARLTIVPTPDVTIRVFMAFRGVHAYDAELDTAKIEELRSPAREGFVA
VEWGGMNLNGVSYD*
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mRNA from alignment at Ecto-sp9_F_contig9377:646..4046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9377.17537.1 ID=mRNA_Ecto-sp9_F_contig9377.17537.1|Name=mRNA_Ecto-sp9_F_contig9377.17537.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3401bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9377:646..4046+ (Ectocarpus species9 EcSCA_722f female)
ATGGAACCTCTCCAGGGCGAGCTCAGGAGCTTCCACGAACGGCTGACGAA GGAAAAGGAACAGGTCCGGATGAACGGCGAACAGCTTCGAGAGAAGCAGC TCGTTTTCCTCCGCCAGCAGCAAACGGCGGCGCACAGCAGCCAGAAGCTC GGAGCAGCATCAGGCGGAAGCCCACAAAGTACGTCCTCGTCGAACGCCGA ATGCAGAAATCCGTGTTTTGGTATGTGCGAGTGTAGGATCAGTACAATGC AAGCCGTGTCTGGATTGACGAGTATCGCGTAGGCACTTTTGCACGACTCG CCCTTGTTTTAGGGAAAAACAGATTTGGGGAGTATCGTACGCCTCAGTTT CCAGTCGACCATGCCGTTCTCAGACCTGACATGCACCACGTGTTGTTGCA CCCGGTGGACAAGCCGGAGGGCCCTTCTTTTCTTTGTCTCATACCTCGTG CTCCTCACCTGCTGCTGCTGATCTTCGTCTTCGCCAGCTTCGCCGAGGTC TACGGGGCGGGCGTGTGTCTCGCCGGCTGCCGACTCGGTCAAGGAAGGAG GGGCGGGCAGCTCAGGGAGGTCTGGCAGCGCAGCAGACGCCGGCGCTTTG GCCTCCCAAGCCGCTGTCGGAGAAGGCACAACCGATTCAGTTGGAGATGA AGATGAGGTGCAGTGCCGCAACTATTTAGCGTGCGCAATAGCAAGGGAAC GCATTTCTTCACGAGTGCAGGCATGTTGAACTACGCGTGCCAAGGTGCAG TCACCGTGAACTGGACTTGGGCAACCGAAAACGTAGTGAAACCGCATCGC CTTTTCATATGACGCCATTTGTAATGCTAACCTAGCGTTGACCGCTGCCC CCTGTCTTGTTCGTGTTCTGCTCGTTGCCTTGCGCGAAAGAACGAAATCA GCTTTTCCATCAATGCGCTAACCGGAAAACAATACACCATCAGAGCGTTT CCCAGCGAAACAGTGCTGGACGTCAAGAAGAAGGTTCAAGACACACAGGA CATCCCTTGCGAACAACAGCGCATCATCTACGAAGGCCAACAGACGAACG ATGACCGGACCCTGCGTGACTGCAACATTCGAAACGGGTCCGTGGCTCAT TTGGTTTTGAGTCTGAGGAAGCCCGTGATCCTCCTGTACCCGCCAGCCCC CGTCGATATCATGGTAGCGGTCGAGCTGAGCCCGCTCTGGAGCTTCTCCG CGCTGTACCCGAAGCTCCAGCCCAGGAACTTGAAGCAGCTAGCCGCAGAC TATGAGGTCAGTCTTGGGGACATGTAGAAAGCAACACACATCAGGCATCC CAGACGTCCTGTGGAGAGACACCAAAACGTGTAGCACATCTTTGTCGCTG AACCTGTGCCCTTTTGAACAACTCGCGTGCCAAGGCCGTTCGGACCGATA GGCGCCATATGACTTGTTTTGGTGACGTCAGGGTAGAACCAGGCTTTTTT TTGTCCTTGGCATCGGCTTGCCGTTGTGGCACCAAGATCACGCTTTGGTC GTTACGCACACCCTAAGCGTTGAAAGTCCCGTCCTTCTCTCCTTTCCTGT GCTAGGCTGGTTCCCAGGGTAACGTGGCTGGTGGCCAGCAGTGCAAATGG AACGTCCACGCCAGTGCCGACGGGTCTCTCAAAGACCTGAGCACCGGCAG GGAGTACCCGTATCTGTTCTGGGAAGCAGACTCTTCCGACAGCCGGGTTT CGCGGAGCTTTGCACTGGACGGCTCGAGGTCATTCTGTGTGGCAGGCGAT GCCGCAGGTGTGGTGTTATGGGTGCTGGTGCTGCGTCAAGGCAGGGCAAC GTGTGAATTCAGCGTGGCGTTACATGCGGTACATCGTTTGGTCGCTGTTC TGCGTCCAACCAACTACGGGAACCGAAGATCGTGTCACAGCGGAATCTAG CAGCTGTACAAACGAGCGCCACACATAGCGTATAAAGCTCGAGAGGTAGC TTTGGAGAAGGCTGCTGGGTCGACCAAGGAGTAGCTTGGTGACGGTGGAT GGCTCCCGAGATGTCATTCTGTCCATCCGAAGAGGACCGAGGCGTAGCGG GTACGATCACATGCCTGCACCGTATTTTGTTGTCAGGATTGGCTTCGCTC GTCCCGACGTCAATGCCCCGTAGCTCTGCTGCGGATGCTGGCTATACACC AATTTCGACGCCTATCCCATGCTGGTCGCCTCGGTAGTCTAGTTGATATC CTCGCAAACTTCCTATCTATTAATAGTGGCCAGGTTCAGGGGATCGAATA CCGGCGTAAGCGAGTTTTTCTTGCAAAGTGGGTTTTTCTCTCGCTCCCGT TCCTGGCCTGGGTGGAAAGCGCTAGTTCGTGTGAACACAGAGGGAAGAGA GTGCTGCACTGTTCTCGCCTATTGAAGGCAAAGCACCGCAGGGGGGCGAG TAGGGGGGCTCAGGGAGAAGAAATCTTCTGTGTGACCACGGTTTGGAGTA AACGGCACAGATGCTCTGAGCGCTGATTTGAAGTGAAGACAACAACACAA TCCCACGCGAAGCAGGTAAGGTCAGTTTAGGAGTGGACCTTCCCTACCAT ATTGTGCAACCTTGGATCACCTCCTGGCAGTTCGTTTGCACAACACCCTG CCTGGATGCGTTATCGCCAATGTGACTCATGTTTCGTTGCACGATACCAT TCGAAAGGCGTGTTCCTCGATGTCGTCCTGGAACGCGTCGGGCTCAACGC GCGGGAGCGCTGCGACATGGTCACTTGCTGGCTGCCGCGGCTGGAGTCGT CCCGCTTCAACGTGATCTACTTCGTGGAGGTCGAGCGGTACGAGCAAGCA GCCCGCCTGACCATCGTGCCTACTCCAGATGTCACGATCCGCGTCTTCAT GGCCTTCAGGTGGGTCGTGGCTGTGCGAAGTTGCTCGATTGGTCTGAGAG GCTATCAACGGACCACTCTGTGAAGGAGGACCATGTTGGGCTCATTGTAC TGAGCCATCTCATCTCAATTCAGGTTGCGCAGCTTCATTTGGGTGAGGTG ACAATAGTTCGGATGCCGACCCTGAAGTGTAACCCTGGTACAACCTATTG ACAAACATGAACATAATATCAACATCCCAGACTTGGCCACGCCTCGCACA GAACACCTTTTCGAAGTTGATGGCCCGTACCCAAAAGTGATCCGCCCATA CCGCTCGATAATTAAGTAGGTCACATGAGAAGCTTTCTATCGTTGCATCA GCTCGTTTCTCAGTACCGCACATCAGCCATTTCTGAACCTCGTCGGGTCA CGGCGAGGTGTTTTGTGTTTGCAGAGGCGTCCATGCGTACGACGCGGAGC TGGACACTGCTAAGATTGAAGAGCTACGATCGCCTGCCCGGGAGGGATTC GTGGCAGTAGAGTGGGGGGGCATGAACCTTAACGGAGTTTCGTACGACTA A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9377:646..4046+

>mRNA_Ecto-sp9_F_contig9377.17537.1 ID=mRNA_Ecto-sp9_F_contig9377.17537.1|Name=mRNA_Ecto-sp9_F_contig9377.17537.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2490bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9377:646..4046+ (Ectocarpus species9 EcSCA_722f female)
ATGGAACCTCTCCAGGGCGAGCTCAGGAGCTTCCACGAACGGCTGACGAA
GGAAAAGGAACAGGTCCGGATGAACGGCGAACAGCTTCGAGAGAAGCAGC
TCGTTTTCCTCCGCCAGCAGCAAACGGCGGCGCACAGCAGCCAGAAGCTC
GGAGCAGCATCAGGCGGAAGCCCACAAAATGGAACCTCTCCAGGGCGAGC
TCAGGAGCTTCCACGAACGGCTGACGAAGGAAAAGGAACAGGTCCGGATG
AACGGCGAACAGCTTCGAGAGAAGCAGCTCGTTTTCCTCCGCCAGCAGCA
AACGGCGGCGCACAGCAGCCAGAAGCTCGGAGCAGCATCAGGCGGAAGCC
CACAAACTTCGCCGAGGTCTACGGGGCGGGCGTGTGTCTCGCCGGCTGCC
GACTCGGTCAAGGAAGGAGGGGCGGGCAGCTCAGGGAGGTCTGGCAGCGC
AGCAGACGCCGGCGCTTTGGCCTCCCAAGCCGCTGTCGGAGAAGGCACAA
CCGATTCAGTTGGAGATGAAGATGAGCTTCGCCGAGGTCTACGGGGCGGG
CGTGTGTCTCGCCGGCTGCCGACTCGGTCAAGGAAGGAGGGGCGGGCAGC
TCAGGGAGGTCTGGCAGCGCAGCAGACGCCGGCGCTTTGGCCTCCCAAGC
CGCTGTCGGAGAAGGCACAACCGATTCAGTTGGAGATGAAGATGAGAACG
AAATCAGCTTTTCCATCAATGCGCTAACCGGAAAACAATACACCATCAGA
GCGTTTCCCAGCGAAACAGTGCTGGACGTCAAGAAGAAGGTTCAAGACAC
ACAGGACATCCCTTGCGAACAACAGCGCATCATCTACGAAGGCCAACAGA
CGAACGATGACCGGACCCTGCGTGACTGCAACATTCGAAACGGGTCCGTG
GCTCATTTGGTTTTGAGTCTGAGGAAGCCCGTGATCCTCCTGTACCCGCC
AGCCCCCGTCGATATCATGGTAGCGGTCGAGCTGAGCCCGCTCTGGAGCT
TCTCCGCGCTGTACCCGAAGCTCCAGCCCAGGAACTTGAAGCAGCTAGCC
GCAGACTATGAGAACGAAATCAGCTTTTCCATCAATGCGCTAACCGGAAA
ACAATACACCATCAGAGCGTTTCCCAGCGAAACAGTGCTGGACGTCAAGA
AGAAGGTTCAAGACACACAGGACATCCCTTGCGAACAACAGCGCATCATC
TACGAAGGCCAACAGACGAACGATGACCGGACCCTGCGTGACTGCAACAT
TCGAAACGGGTCCGTGGCTCATTTGGTTTTGAGTCTGAGGAAGCCCGTGA
TCCTCCTGTACCCGCCAGCCCCCGTCGATATCATGGTAGCGGTCGAGCTG
AGCCCGCTCTGGAGCTTCTCCGCGCTGTACCCGAAGCTCCAGCCCAGGAA
CTTGAAGCAGCTAGCCGCAGACTATGAGGCTGGTTCCCAGGGTAACGTGG
CTGGTGGCCAGCAGTGCAAATGGAACGTCCACGCCAGTGCCGACGGGTCT
CTCAAAGACCTGAGCACCGGCAGGGAGTACCCGTATCTGTTCTGGGAAGC
AGACTCTTCCGACAGCCGGGTTTCGCGGAGCTTTGCACTGGACGGCTCGA
GGTCATTCTGTGTGGCAGGCGATGCCGCAGGCTGGTTCCCAGGGTAACGT
GGCTGGTGGCCAGCAGTGCAAATGGAACGTCCACGCCAGTGCCGACGGGT
CTCTCAAAGACCTGAGCACCGGCAGGGAGTACCCGTATCTGTTCTGGGAA
GCAGACTCTTCCGACAGCCGGGTTTCGCGGAGCTTTGCACTGGACGGCTC
GAGGTCATTCTGTGTGGCAGGCGATGCCGCAGGCGTGTTCCTCGATGTCG
TCCTGGAACGCGTCGGGCTCAACGCGCGGGAGCGCTGCGACATGGTCACT
TGCTGGCTGCCGCGGCTGGAGTCGTCCCGCTTCAACGTGATCTACTTCGT
GGAGGTCGAGCGGTACGAGCAAGCAGCCCGCCTGACCATCGTGCCTACTC
CAGATGTCACGATCCGCGTCTTCATGGCCTTCAGGCGTGTTCCTCGATGT
CGTCCTGGAACGCGTCGGGCTCAACGCGCGGGAGCGCTGCGACATGGTCA
CTTGCTGGCTGCCGCGGCTGGAGTCGTCCCGCTTCAACGTGATCTACTTC
GTGGAGGTCGAGCGGTACGAGCAAGCAGCCCGCCTGACCATCGTGCCTAC
TCCAGATGTCACGATCCGCGTCTTCATGGCCTTCAGAGGCGTCCATGCGT
ACGACGCGGAGCTGGACACTGCTAAGATTGAAGAGCTACGATCGCCTGCC
CGGGAGGGATTCGTGGCAGTAGAGTGGGGGGGCATGAACCTTAACGGAGT
TTCGTACGACTAAAGGCGTCCATGCGTACGACGCGGAGCTGGACACTGCT
AAGATTGAAGAGCTACGATCGCCTGCCCGGGAGGGATTCGTGGCAGTAGA
GTGGGGGGGCATGAACCTTAACGGAGTTTCGTACGACTAA
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