prot_Ecto-sp9_F_contig9375.17536.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9375.17536.1
Unique Nameprot_Ecto-sp9_F_contig9375.17536.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length53
Homology
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske ((2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0
Query:   17 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 53
            SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL
Sbjct:  586 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 622          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.000e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0
Query:   17 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 52
            SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR
Sbjct:  821 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 856          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSE0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 0
Query:   17 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQP 48
            S +GW+ETTYL+  +RI RGNKG++FVLT+ P
Sbjct:  248 SDSGWLETTYLDDDVRIGRGNKGTLFVLTKDP 279          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LER3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.310e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 46
            +SF F  + K K + +S  GW+ETTY++  +RI RGNKGS+F+LTR
Sbjct:  205 ISFLFDIRAKIKGSYDS--GWVETTYVSDSVRIGRGNKGSMFILTR 248          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYX8_THAPS)

HSP 1 Score: 50.1 bits (118), Expect = 1.050e-5
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 47
            LSF F+ +   K    +  GW+ETTYL+  +RI RGNKGS+FVLTR+
Sbjct:  216 LSFLFAIRGAIKGTNEA--GWVETTYLSDDLRIGRGNKGSLFVLTRE 260          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP (fibrillin family protein n=2 Tax=Crinalium TaxID=241421 RepID=K9VW66_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 0
Query:   14 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 46
            N N   GW++ TYL++ +RI RGNKGS+FVLT+
Sbjct:  160 NSNDQQGWLDITYLDEDLRIGRGNKGSVFVLTK 192          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBF1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.470e-5
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 0
Query:   20 GWMETTYLNQGIRIARGNKGSIFVLTRQP 48
            GW+ETT++N+ +RI RGNKG++FVLTR P
Sbjct:  241 GWLETTHINKDMRIGRGNKGTLFVLTRDP 269          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.600e-5
Identity = 19/31 (61.29%), Postives = 29/31 (93.55%), Query Frame = 0
Query:   20 GWMETTYLNQGIRIARGNKGSIFVLTRQPVS 50
            GW++TT++++ IRI RGN+GSIFVLTR+P++
Sbjct:  905 GWLDTTFVDEHIRICRGNRGSIFVLTRRPLT 935          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS7_COCSC)

HSP 1 Score: 48.5 bits (114), Expect = 1.830e-5
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 47
            L   F P  K      +PTGW++TTYL+   RI RG+KGS+FV  RQ
Sbjct:  106 LKIGFLPALKIPLGFANPTGWVDTTYLDDDFRIGRGDKGSVFVTARQ 152          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Plastoglobulin-like (protein Pgl1 n=8 Tax=Cyanobacteria TaxID=1117 RepID=V5V5M0_9CYAN)

HSP 1 Score: 48.9 bits (115), Expect = 1.870e-5
Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 0
Query:   14 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 46
            N N   GW++ TYL++ +RI+RGN+GS+FVLTR
Sbjct:  160 NSNDQQGWLDITYLDEDLRISRGNEGSLFVLTR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rieske1.430e-15100.00(2Fe-2S) domain protein n=1 Tax=Ectocarpus silicul... [more]
Rieske5.000e-15100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical4.200e-662.50protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical5.310e-652.17protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
PAP_fibrillin1.050e-553.19domain-containing protein n=1 Tax=Thalassiosira ps... [more]
PAP1.340e-557.58fibrillin family protein n=2 Tax=Crinalium TaxID=2... [more]
Hypothetical1.470e-565.52protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Rieske1.600e-561.29domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
PAP_fibrillin1.830e-548.94domain-containing protein n=1 Tax=Coccomyxa subell... [more]
Plastoglobulin-like1.870e-557.58protein Pgl1 n=8 Tax=Cyanobacteria TaxID=1117 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 14..44
e-value: 3.4E-9
score: 37.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9375contigEcto-sp9_F_contig9375:5142..5300 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9375.17536.1mRNA_Ecto-sp9_F_contig9375.17536.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9375 5142..5300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9375.17536.1 ID=prot_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVS
SRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom