mRNA_Ecto-sp9_F_contig937.17532.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U7_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 1.080e-135 Identity = 236/268 (88.06%), Postives = 242/268 (90.30%), Query Frame = 1
Query: 49 MADNANNTAVGRREKWWSVAKAIAFELKPFSLPGVEDVKAAAVAARTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPALHHGDGNEDDNHRGANNNQDEDFVWVEPEPVARDVAAGDADEPEDGNGSEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEXXXXXXXXRRLALQAVEQDEWN 852
MADNANNTA+GR EKWWS+ KAIAFELKPFSLPGVEDVKAAAVA RTNVRQ+ DELVRVTPEA+GAVKAVNP RALGL AWLCGWALFIWLEFGAVYFIISSMAMIF+NLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPA HGDGNEDDNHRGANN+QDEDFVWVEPEPV RDVAAGDADEPEDGNGSEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FE RRLALQAVEQDEWN
Sbjct: 1 MADNANNTALGRGEKWWSLVKAIAFELKPFSLPGVEDVKAAAVAVRTNVRQLTDELVRVTPEALGAVKAVNPSRALGLMAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHQHGDGNEDDNHRGANNDQDEDFVWVEPEPVVRDVAAGDADEPEDGNGSEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKRARRG-FEERKERQEERRLALQAVEQDEWN 267
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA2_ECTSI) HSP 1 Score: 347 bits (891), Expect = 7.220e-118 Identity = 181/205 (88.29%), Postives = 182/205 (88.78%), Query Frame = 1
Query: 49 MADNANNTAVGRREKWWSVAKAIAFELKPFSLPGVEDVKAAAVAARTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPALHHGDGNEDDNHRGANNNQDEDFVWVEPEPVARDVAAGDADEPEDGNGSEYD 663
MADNANNTAVGRREKWWSV KAIAFELKPFSLP VEDVKAAAVA RTNVRQVVDELVRVTPEAVGAVKAVNPLRALGL AWLCGWALFIWLEFGAVYFIISSMAMIF+NLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPA H DEDFVWVEPEPV RDVAAGDADEPEDGNGSEYD
Sbjct: 1 MADNANNTAVGRREKWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLLAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHHXXXXX-----XXXXXXXDEDFVWVEPEPVVRDVAAGDADEPEDGNGSEYD 200
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K3_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.880e-28 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 94 WWSVAKAIAFELKPFSLPGVEDVKAAAVAARTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINLGERGE-SEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 495
WW V KA+AFEL+PF +P DV A + +A +N + + A V+ L L AWL W L EFG V+ I+S++A +F+NLGE GE E+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct: 7 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSNAAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 141
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6RAW5_ORNAN) HSP 1 Score: 76.3 bits (186), Expect = 7.190e-14 Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 265 LRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINL---GERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVA 498
L L + WL LF+ LEFG YF++S I++ GE+ E EWSAYSVFN GC A+ GT+ AEQ ER+++ Q +A
Sbjct: 31 LTLLKVLLWLVLLGLFVELEFGLPYFVLSLFYWIYVGTRGPGEKKEGEWSAYSVFNPGCEAIQGTLTAEQLERQLLNQPLA 111
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: DgyrCDS11346 (n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W5J8_9ANNE) HSP 1 Score: 77.4 bits (189), Expect = 1.190e-13 Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 244 AVKAVNPLRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINLGERGESEWSAYSVFNAGCRALLGTINAEQFEREI 480
A+ L AL + WL + LF+ LEFG V+ +IS +IFINLG R E SAYSVFN C L GT AEQFERE+
Sbjct: 89 AISESKALIALKVGLWLVLFGLFVELEFGFVFVVISIFFIIFINLGSRKRGEKSAYSVFNENCERLDGTFTAEQFEREL 167
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3ERM7_PRIPA) HSP 1 Score: 73.6 bits (179), Expect = 2.230e-12 Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 259 NPLRALGLSA--WLCGWALFIWLEFGAVYFIISSMAMIFINLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQ 489
+P L +A +L G F+W+EFGAV+F+ + + I + LG R + E SAYSVFN+ C LLG++ AE FER+++ +
Sbjct: 80 SPTATLAATALLYLVGQIYFVWIEFGAVFFVFACLTGICLGLGSRRQGEVSAYSVFNSNCERLLGSMTAEHFERDMLHR 158
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: Protein (CBG27167 n=1 Tax=Caenorhabditis briggsae TaxID=6238 RepID=B6IL76_CAEBR) HSP 1 Score: 70.9 bits (172), Expect = 3.570e-12 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 271 ALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQ 489
+L + ++ G AL +W FG V+FI+S + + N G R E SAYSVFN C L G++ AE FER+++RQ
Sbjct: 12 SLAIGIYVIGQALAVWAHFGCVFFILSLILFTYWNTGRRRHGEMSAYSVFNDNCERLAGSMTAEHFERDMLRQ 84
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSVFN (motif domain containing 1 n=3 Tax=Microchiroptera TaxID=30560 RepID=A0A7J8GT24_MOLMO) HSP 1 Score: 71.2 bits (173), Expect = 5.570e-12 Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 256 VNPLRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINL---GERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVA 498
+ + L + WL LF+ LEFG YF++S +++ + GE+ E E SAYSVFN GC A+ GT+ AEQFERE+ + +A
Sbjct: 31 LTSITFLKVLLWLILLGLFVELEFGLAYFVLSLFYWMYVGMRGPGEKKEGEKSAYSVFNPGCEAIQGTLTAEQFERELQLRPLA 114
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein (Fragment) n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=R4FQZ8_RHOPR) HSP 1 Score: 72.0 bits (175), Expect = 5.570e-12 Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 289 WLCGWALFIWLEFGAVYFIISSMAMIFINL--GERGESEWSAYSVFNAGCRALLGTINAEQFEREI 480
W+ + F+ +EFGAVYF+IS + I++N G + +E SAYSVFN GCR + GTI+AEQF+REI
Sbjct: 73 WIILYIFFVIIEFGAVYFVISILVFIYLNTRTGSKPANEISAYSVFNEGCRPIDGTIDAEQFDREI 138
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Match: SAYSvFN (domain-containing protein 1 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F7BD0E) HSP 1 Score: 72.0 bits (175), Expect = 6.110e-12 Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 265 LRALGLSAWLCGWALFIWLEFGAVYFIISSMAMIFINL---GERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVA 498
L L + WL LF+ LEFG YF++S I++ GE+ E EWSAYSVFN G A+ GT+ AEQ ER+++ Q +A
Sbjct: 65 LTLLKVLLWLVLLGLFVELEFGLPYFVLSLFYWIYVGTRGPGEKKEGEWSAYSVFNPGYEAIQGTLTAEQLERQLLNQPLA 145 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig937.17532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig937.17532.1 >prot_Ecto-sp9_F_contig937.17532.1 ID=prot_Ecto-sp9_F_contig937.17532.1|Name=mRNA_Ecto-sp9_F_contig937.17532.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=285bp CDYTQFITTRVIRGQSMADNANNTAVGRREKWWSVAKAIAFELKPFSLPGback to top mRNA from alignment at Ecto-sp9_F_contig937:13165..15870- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig937.17532.1 ID=mRNA_Ecto-sp9_F_contig937.17532.1|Name=mRNA_Ecto-sp9_F_contig937.17532.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2706bp|location=Sequence derived from alignment at Ecto-sp9_F_contig937:13165..15870- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig937:13165..15870- >mRNA_Ecto-sp9_F_contig937.17532.1 ID=mRNA_Ecto-sp9_F_contig937.17532.1|Name=mRNA_Ecto-sp9_F_contig937.17532.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1710bp|location=Sequence derived from alignment at Ecto-sp9_F_contig937:13165..15870- (Ectocarpus species9 EcSCA_722f female)back to top |