prot_Ecto-sp9_F_contig936.17524.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig936.17524.1
Unique Nameprot_Ecto-sp9_F_contig936.17524.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length756
Homology
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BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.180e-181
Identity = 624/647 (96.45%), Postives = 628/647 (97.06%), Query Frame = 0 
Query:  109 FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQRVEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXEMRDVGLAPTFFAYISAMSALKVAGQWKEALSLLDEMVKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNVLIDACARGGNHWEAARLLKKTKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALGLLDEMRKSXXXXXXXXXXXXXXSCAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 755
            FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALA   EGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXX MR VGLAPTFFAYISAMSA+KVAGQWKEALSLLDEM KGRLISDVFSFYNVVDAYGKDGQLARTLVQT+ANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFN+LIDACARGG+HW AARLL K KSLGLRPNSLSYNPIIHSCRGGTDEEWRLAL L       XXXXXXXXXXXXXX  AKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG
Sbjct:    4 FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALALGGEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXXMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 650
[Close]
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN1_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 1.580e-159
Identity = 330/409 (80.68%), Postives = 335/409 (81.91%), Query Frame = 0 
Query:  366 ALAQRVEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXEMRDVGLAPTFFAYISAMSALKVAGQWKEALSLLDEMVKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNVLIDACAR-------------------GGNHWEAARLLKKTKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALGLLDEMRKSXXXXXXXXXXXXXXSCAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 755
            ALAQR EGVPMSTTMYNFGI                 RMKSNPATPPDAQT                      EMR VGLAPTFFAYISAMSA+KVAGQWKEALSLLDEM KGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAE+PDELVKRMENNGVELDVMSFN+LIDACAR                   GG+HW AARLLKK KSLGLRPNSLSYNPIIHSCRGGTDEEWRLAL L       XXXXXXXXXXXXXX  AKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLL+PIPTSDVYLGGS GTPEGGEVG
Sbjct:   76 ALAQRGEGVPMSTTMYNFGIDAGVALLE---------RMKSNPATPPDAQTYAYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEEPDELVKRMENNGVELDVMSFNILIDACARYTAHRVPLPLPMSHVPFRKGGSHWAAARLLKKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLDPIPTSDVYLGGSSGTPEGGEVG 475
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.180e-18196.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.580e-15980.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 451..477
e-value: 0.0069
score: 16.6
coord: 344..365
e-value: 0.18
score: 12.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 162..210
e-value: 3.3E-8
score: 33.6
coord: 378..426
e-value: 2.3E-8
score: 34.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 539..597
e-value: 2.7E-10
score: 40.2
coord: 611..670
e-value: 1.8E-12
score: 47.1
coord: 220..253
e-value: 0.011
score: 15.8
coord: 255..316
e-value: 1.0E-12
score: 47.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 164..197
e-value: 3.3E-5
score: 21.8
coord: 416..448
e-value: 2.3E-5
score: 22.3
coord: 269..303
e-value: 1.6E-7
score: 29.1
coord: 199..233
e-value: 1.8E-6
score: 25.7
coord: 234..268
e-value: 2.3E-6
score: 25.4
coord: 625..659
e-value: 3.3E-6
score: 24.9
coord: 304..338
e-value: 5.1E-5
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 10.797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..688
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 377..411
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 448..482
score: 8.232
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 413..447
score: 11.213
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..196
score: 11.312
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 623..657
score: 11.411
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 11.367
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..622
score: 9.142
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..301
score: 11.411
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 337..371
score: 7.761
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..585
score: 11.071
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 302..336
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 127..161
score: 6.511
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 252..368
e-value: 1.0E-31
score: 112.5
coord: 599..731
e-value: 2.0E-27
score: 98.4
coord: 520..598
e-value: 1.4E-12
score: 49.6
coord: 369..519
e-value: 1.1E-28
score: 102.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 102..247
e-value: 3.9E-29
score: 103.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 534..597
coord: 604..705
coord: 293..501
coord: 143..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig936contigEcto-sp9_F_contig936:16523..25370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig936.17524.1mRNA_Ecto-sp9_F_contig936.17524.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig936 15777..25433 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig936.17524.1 ID=prot_Ecto-sp9_F_contig936.17524.1|Name=mRNA_Ecto-sp9_F_contig936.17524.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=756bp
MMEPASHPCFRINSRFAPLCFIPTTHRARPRPNEPWRLSRRKHRLGCSAA
GARTAAEGDHDAHGGVGVGNDGGGIGGGHEQAAARSPAPVQGWTARKGNE
SLNIKQMNFRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRL
LDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRMLSEGVRLDGYT
FSALIEACSKGGNVAKGVELLREMVDAGVARDCFSYNAALHGFVRNGDSK
NALLMLEDMVADGVRPDAITYGTLLACCGNSGEWKLCVSLMDRMRSEGIT
PNAYSFSPLIKACGKEGRWALAVKTLEDMEASGPTPNEHNWLMAIGACGN
AGQWEEALRLIDKLEALAQRVEGVPMSTTMYNFGIDACARAGRWDQGVAL
LERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRDVGLAPTFF
AYISAMSALKVAGQWKEALSLLDEMVKGRLISDVFSFYNVVDAYGKDGQL
ARTLVQTNANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVEL
DVMSFNVLIDACARGGNHWEAARLLKKTKSLGLRPNSLSYNPIIHSCRGG
TDEEWRLALGLLDEMRKSGLTPDVVSFNTAITSCAKAGDWRRSLNLFAGM
KVEGITPDILSYNAVISACAKGGQWRIGLELLAKVRADPTLEANQRTYTS
AINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPE
GGEVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf