prot_Ecto-sp9_F_contig936.17522.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig936.17522.1
Unique Nameprot_Ecto-sp9_F_contig936.17522.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.190e-56
Identity = 154/187 (82.35%), Postives = 159/187 (85.03%), Query Frame = 0 
Query:    1 RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKG 187
            RDLVAGGTWLGVSRSGKFAT+TNVSSTWE++LE V LGGWANK A V XXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXX       VSSLGLSRPAGSS+ SSSLGWLYALCAAAGLVT ASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYC+RLSK  R   G
Sbjct:   56 RDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXX-------VSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSKERRRYAG 235
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BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.840e-51
Identity = 163/187 (87.17%), Postives = 164/187 (87.70%), Query Frame = 0 
Query:    1 RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKG 187
            RDLVAGGTWLGVSRSGKFAT+TNV STWE MLEVVALGGWANKAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       SLG S PAGSS  SS LGWLYALCAAAGLVT ASVPLAVAVAR KARKSRGGLVADFLKGDEDAETYCARLSK  R   G
Sbjct:   64 RDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP------SLGFSTPAGSSSSSSLLGWLYALCAAAGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSKERRRFAG 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.190e-5682.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.840e-5187.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008551Transport and Golgi organisation protein 2PFAMPF05742TANGO2coord: 2..26
e-value: 8.5E-5
score: 22.7
IPR008551Transport and Golgi organisation protein 2PANTHERPTHR17985SER/THR-RICH PROTEIN T10 IN DGCR REGIONcoord: 1..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 150..192
NoneNo IPR availableTMHMMTMhelixcoord: 126..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig936contigEcto-sp9_F_contig936:41..619 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig936.17522.1mRNA_Ecto-sp9_F_contig936.17522.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig936 41..619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig936.17522.1 ID=prot_Ecto-sp9_F_contig936.17522.1|Name=mRNA_Ecto-sp9_F_contig936.17522.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVAAA
AAAAAAAAILRARAGHEHGSSSSDATSGSSGGGGDGGGGGDGGGGGWGAA
AAAAVVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVAR
AKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKGVPKWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008551TANGO2