mRNA_Ecto-sp9_F_contig9358.17520.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9358.17520.1
Unique NamemRNA_Ecto-sp9_F_contig9358.17520.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9358.17520.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.570e-45
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = -3 
Query:    1 GRRRVPGAVGAAIGLGGGEEVTEAATRQQRGVRRRQDGTGYRDGHGRGGTGDDDSGDGRDVPVSPASRRNGDGSSSLGERDRGTPETETTAAEA 282
            GRRRVPGAVGAAIGLGGGEEVTEAATRQQRGVRRRQDGTGYRDGHGRGG+ DDDSGDGRDVPVSPASRRNGDGSSSLGERDRGTPETETTAAEA
Sbjct:  946 GRRRVPGAVGAAIGLGGGEEVTEAATRQQRGVRRRQDGTGYRDGHGRGGSDDDDSGDGRDVPVSPASRRNGDGSSSLGERDRGTPETETTAAEA 1039
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9358.17520.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.570e-4597.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9358contigEcto-sp9_F_contig9358:3506..3816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size313
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.661753-CDS-Ecto-sp9_F_contig9358:3505..38141622931015.661753-CDS-Ecto-sp9_F_contig9358:3505..3814Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9358 3506..3814 +
1692278993.7854922-CDS-Ecto-sp9_F_contig9358:3505..38141692278993.7854922-CDS-Ecto-sp9_F_contig9358:3505..3814Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9358 3506..3814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.6813977-UTR-Ecto-sp9_F_contig9358:3814..38161622931015.6813977-UTR-Ecto-sp9_F_contig9358:3814..3816Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9358 3815..3816 +
1692278993.8003242-UTR-Ecto-sp9_F_contig9358:3814..38161692278993.8003242-UTR-Ecto-sp9_F_contig9358:3814..3816Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9358 3815..3816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9358.17520.1prot_Ecto-sp9_F_contig9358.17520.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9358 3506..3814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9358.17520.1

>prot_Ecto-sp9_F_contig9358.17520.1 ID=prot_Ecto-sp9_F_contig9358.17520.1|Name=mRNA_Ecto-sp9_F_contig9358.17520.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
RFSRRCFRFRRTPIPLAQTTAAVAVSSRGGRNRHIPAVARIIITGTPSAV
AISVPGPVLPPPHPPLLTGCRFGNLLAPAKADGGTNRPGHSSPAGRASGR
PR*
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mRNA from alignment at Ecto-sp9_F_contig9358:3506..3816+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9358.17520.1 ID=mRNA_Ecto-sp9_F_contig9358.17520.1|Name=mRNA_Ecto-sp9_F_contig9358.17520.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=311bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9358:3506..3816+ (Ectocarpus species9 EcSCA_722f female)
CGCTTCAGCCGCCGTTGTTTCCGTTTCCGGCGTACCCCTATCCCGCTCGC
CCAAACTACTGCTGCCGTCGCCGTTTCTTCGCGAGGCGGGAGAAACAGGC
ACATCCCTGCCGTCGCCAGAATCATCATCACCGGTACCCCCTCTGCCGTG
GCCATCTCGGTACCCGGTCCCGTCCTGCCGCCGCCGCACCCCCCGCTGCT
GACGGGTTGCCGCTTCGGTAACCTCCTCGCCCCCGCCAAGGCCGATGGCG
GCACCAACCGCCCCGGGCACTCGTCGCCGGCCGGCCGCGCCAGCGGCCGC
CCCCGATGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9358:3506..3816+

>mRNA_Ecto-sp9_F_contig9358.17520.1 ID=mRNA_Ecto-sp9_F_contig9358.17520.1|Name=mRNA_Ecto-sp9_F_contig9358.17520.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9358:3506..3816+ (Ectocarpus species9 EcSCA_722f female)
CGCTTCAGCCGCCGTTGTTTCCGTTTCCGGCGTACCCCTATCCCGCTCGC
CCAAACTACTGCTGCCGTCGCCGTTTCTTCGCGAGGCGGGAGAAACAGGC
ACATCCCTGCCGTCGCCAGAATCATCATCACCGGTACCCCCTCTGCCGTG
GCCATCTCGGTACCCGGTCCCGTCCTGCCGCCGCCGCACCCCCCGCTGCT
GACGGGTTGCCGCTTCGGTAACCTCCTCGCCCCCGCCAAGGCCGATGGCG
GCACCAACCGCCCCGGGCACTCGTCGCCGGCCGGCCGCGCCAGCGGCCGC
CCCCGATGACGCTTCAGCCGCCGTTGTTTCCGTTTCCGGCGTACCCCTAT
CCCGCTCGCCCAAACTACTGCTGCCGTCGCCGTTTCTTCGCGAGGCGGGA
GAAACAGGCACATCCCTGCCGTCGCCAGAATCATCATCACCGGTACCCCC
TCTGCCGTGGCCATCTCGGTACCCGGTCCCGTCCTGCCGCCGCCGCACCC
CCCGCTGCTGACGGGTTGCCGCTTCGGTAACCTCCTCGCCCCCGCCAAGG
CCGATGGCGGCACCAACCGCCCCGGGCACTCGTCGCCGGCCGGCCGCGCC
AGCGGCCGCCCCCGATGA
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