mRNA_Ecto-sp9_F_contig10139.175.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10139.175.1
Unique NamemRNA_Ecto-sp9_F_contig10139.175.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.820e-30
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXX    EAQYVSSRGRV IAKKRFPEVG
Sbjct:  144 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXRE--EAQYVSSRGRVSIAKKRFPEVG 234
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BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L780_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.140e-28
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXX    EAQYVSSRGRV IAKKRFPEVG
Sbjct:  533 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXRE--EAQYVSSRGRVSIAKKRFPEVG 623
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BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K188_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.400e-28
Identity = 87/93 (93.55%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRT GTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXX    EAQYVSSRGRV IAKKRFPEVG
Sbjct:  269 MVGRRTPGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXRE--EAQYVSSRGRVSIAKKRFPEVG 359
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.200e-22
Identity = 76/93 (81.72%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRTLGTQLTGVILPVISSDESPVAPTLD+SMGE             XXXXXXXXXXXXXXXXXXXXXX AQY+ SRGRVRIAKKRFPEVG
Sbjct:   21 MVGRRTLGTQLTGVILPVISSDESPVAPTLDQSMGE------------GXXXXXXXXXXXXXXXXXXXXXXXAQYIRSRGRVRIAKKRFPEVG 101
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BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.120e-21
Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGE       E+EXXXXXXXXX                EAQYVSSRGRV IAKKRFPEVG
Sbjct:  327 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGE-------EEEXXXXXXXXXE---------------EAQYVSSRGRVSIAKKRFPEVG 397
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BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Reverse (transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.730e-21
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    4 VGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAK 258
            VGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXX    EAQYVSSRGRV  A+
Sbjct:   22 VGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXRE--EAQYVSSRGRVDRAR 104
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.790e-21
Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGE       E+EXXXXXXXXX                EAQYVSSRGRV IAKKRFPEVG
Sbjct:  889 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGE-------EEEXXXXXXXXXE---------------EAQYVSSRGRVSIAKKRFPEVG 959
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF91_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-18
Identity = 63/92 (68.48%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    4 VGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRVRIAKKRFPEVG 279
            VGRRTLGTQLTGVILPVISSDESPVAPTLDE+M        +E+EXXXXXXXXXXX              EAQY SSRG V IAK+RFPEVG
Sbjct:    9 VGRRTLGTQLTGVILPVISSDESPVAPTLDETM--------REEEXXXXXXXXXXXRE------------EAQYESSRGCVGIAKRRFPEVG 80
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.790e-18
Identity = 54/82 (65.85%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEAQYVSSRGRV 246
            MVGRRT G QLTGVIL VISSDESPVAPTLDESMGEVGGGGEKEDE                         EAQYVSSRGRV
Sbjct:   21 MVGRRTRGAQLTGVILLVISSDESPVAPTLDESMGEVGGGGEKEDEGEELGERE-----------------EAQYVSSRGRV 85
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-13
Identity = 78/118 (66.10%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:    4 VGRRTLGTQLTGVILPVISSDESPVAPT--------LDESMGEVG------GGGEKEDEXXXXXXXXXXXXXXXXXXXXXXXXXEA------------QYVSSRGRVRIAKKRFPEVG 279
            VGRRTLGTQLTGVILPV+SSDESPVAPT        LDESMGE G      GG E ++EXXXXXXXXXXXXXXXXXXXXXXXXX               YVSSRGRVRIAK++F  +G
Sbjct:   18 VGRRTLGTQLTGVILPVMSSDESPVAPTPDPIPSPTLDESMGEGGAGWEEDGGEEMKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESYVSSRGRVRIAKRKFRALG 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10139.175.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized1.820e-3094.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.140e-2894.62protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.400e-2893.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.200e-2281.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.120e-2173.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse6.730e-2191.76transcriptase domain-containing protein (Fragment)... [more]
Uncharacterized6.790e-2173.12protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.100e-1868.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.790e-1865.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.290e-1366.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10139contigEcto-sp9_F_contig10139:407..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928207.716351-CDS-Ecto-sp9_F_contig10139:406..7151622928207.716351-CDS-Ecto-sp9_F_contig10139:406..715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10139 407..715 -
1692277795.3119402-CDS-Ecto-sp9_F_contig10139:406..7151692277795.3119402-CDS-Ecto-sp9_F_contig10139:406..715Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10139 407..715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10139.175.1prot_Ecto-sp9_F_contig10139.175.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10139 407..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10139.175.1

>prot_Ecto-sp9_F_contig10139.175.1 ID=prot_Ecto-sp9_F_contig10139.175.1|Name=mRNA_Ecto-sp9_F_contig10139.175.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEVGGGGEKEDEGEEE
DEEGEEDEEEEEEVEEEGEREEAQYVSSRGRVRIAKKRFPEVGLGMDGCV
GC*
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mRNA from alignment at Ecto-sp9_F_contig10139:407..715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10139.175.1 ID=mRNA_Ecto-sp9_F_contig10139.175.1|Name=mRNA_Ecto-sp9_F_contig10139.175.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10139:407..715- (Ectocarpus species9 EcSCA_722f female)
ATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGTTATTCTTCC
GGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTGACGAGAGCA
TGGGGGAGGTGGGGGGGGGAGGGGAGAAGGAAGATGAGGGAGAGGAGGAG
GACGAGGAGGGGGAGGAGGACGAGGAGGAGGAGGAGGAGGTGGAGGAGGA
GGGAGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTACGTA
TCGCGAAGAAGAGGTTCCCGGAGGTGGGGCTAGGGATGGATGGATGTGTT
GGCTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10139:407..715-

>mRNA_Ecto-sp9_F_contig10139.175.1 ID=mRNA_Ecto-sp9_F_contig10139.175.1|Name=mRNA_Ecto-sp9_F_contig10139.175.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10139:407..715- (Ectocarpus species9 EcSCA_722f female)
ATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGTTATTCTTCC
GGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTGACGAGAGCA
TGGGGGAGGTGGGGGGGGGAGGGGAGAAGGAAGATGAGGGAGAGGAGGAG
GACGAGGAGGGGGAGGAGGACGAGGAGGAGGAGGAGGAGGTGGAGGAGGA
GGGAGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCGTACGTA
TCGCGAAGAAGAGGTTCCCGGAGGTGGGGCTAGGGATGGATGGATGTGTT
GGCTGCTAAATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGT
TATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTG
ACGAGAGCATGGGGGAGGTGGGGGGGGGAGGGGAGAAGGAAGATGAGGGA
GAGGAGGAGGACGAGGAGGGGGAGGAGGACGAGGAGGAGGAGGAGGAGGT
GGAGGAGGAGGGAGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTC
GCGTACGTATCGCGAAGAAGAGGTTCCCGGAGGTGGGGCTAGGGATGGAT
GGATGTGTTGGCTGCTAA
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