prot_Ecto-sp9_F_contig928.17440.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig928.17440.1
Unique Nameprot_Ecto-sp9_F_contig928.17440.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length105
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.020e-29
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 0 
Query:   28 TGQVGVEATADGGEWGVDSPSSEMGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLHQLLAE 105
            T  VG+EA ADGGE GVDSPSS MGTTDSY SFTIRVPDESLRCRL   RRYRAG PG V RQIF RHLA LHQ+LAE
Sbjct:  302 THMVGMEAAADGGESGVDSPSSVMGTTDSYASFTIRVPDESLRCRLVRGRRYRAGLPGGVSRQIFRRHLAALHQVLAE 379
[Close]
BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.170e-29
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 0 
Query:   28 TGQVGVEATADGGEWGVDSPSSEMGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLHQLLAE 105
            T  VG+EA ADGG  GVD P S MGTTDSYTSFTIRVPDESLRCRL   RRYRAGTPG VRRQIF RHLA LHQ+LAE
Sbjct:  228 TCMVGMEAAADGGVRGVDRPPSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVRRQIFRRHLAALHQVLAE 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.020e-2979.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
PHD-type8.170e-2979.49domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig928contigEcto-sp9_F_contig928:20624..20938 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig928.17440.1mRNA_Ecto-sp9_F_contig928.17440.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig928 20624..20938 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig928.17440.1 ID=prot_Ecto-sp9_F_contig928.17440.1|Name=mRNA_Ecto-sp9_F_contig928.17440.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
LRVSPSTYLRRTCFNSFCSYSLVTRKLTGQVGVEATADGGEWGVDSPSSE
MGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLH
QLLAE
back to top