mRNA_Ecto-sp9_F_contig928.17440.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig928.17440.1
Unique NamemRNA_Ecto-sp9_F_contig928.17440.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.020e-29
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   82 TGQVGVEATADGGEWGVDSPSSEMGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLHQLLAE 315
            T  VG+EA ADGGE GVDSPSS MGTTDSY SFTIRVPDESLRCRL   RRYRAG PG V RQIF RHLA LHQ+LAE
Sbjct:  302 THMVGMEAAADGGESGVDSPSSVMGTTDSYASFTIRVPDESLRCRLVRGRRYRAGLPGGVSRQIFRRHLAALHQVLAE 379
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BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.170e-29
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:   82 TGQVGVEATADGGEWGVDSPSSEMGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLHQLLAE 315
            T  VG+EA ADGG  GVD P S MGTTDSYTSFTIRVPDESLRCRL   RRYRAGTPG VRRQIF RHLA LHQ+LAE
Sbjct:  228 TCMVGMEAAADGGVRGVDRPPSVMGTTDSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVRRQIFRRHLAALHQVLAE 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig928.17440.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.020e-2979.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
PHD-type8.170e-2979.49domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig928contigEcto-sp9_F_contig928:20624..20938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931004.7512066-CDS-Ecto-sp9_F_contig928:20623..209381622931004.7512066-CDS-Ecto-sp9_F_contig928:20623..20938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 20624..20938 +
1692278989.1441019-CDS-Ecto-sp9_F_contig928:20623..209381692278989.1441019-CDS-Ecto-sp9_F_contig928:20623..20938Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 20624..20938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig928.17440.1prot_Ecto-sp9_F_contig928.17440.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig928 20624..20938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig928.17440.1

>prot_Ecto-sp9_F_contig928.17440.1 ID=prot_Ecto-sp9_F_contig928.17440.1|Name=mRNA_Ecto-sp9_F_contig928.17440.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
LRVSPSTYLRRTCFNSFCSYSLVTRKLTGQVGVEATADGGEWGVDSPSSE
MGTTDSYTSFTIRVPDESLRCRLEGSRRYRAGTPGFVRRQIFGRHLAVLH
QLLAE
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mRNA from alignment at Ecto-sp9_F_contig928:20624..20938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig928.17440.1 ID=mRNA_Ecto-sp9_F_contig928.17440.1|Name=mRNA_Ecto-sp9_F_contig928.17440.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:20624..20938+ (Ectocarpus species9 EcSCA_722f female)
CTCCGTGTCTCTCCGTCCACATATCTCCGAAGAACATGTTTCAACTCTTT
TTGCTCGTATTCCCTCGTAACGCGCAAATTGACTGGACAGGTTGGTGTGG
AGGCGACAGCGGATGGCGGTGAATGGGGGGTGGACAGTCCTTCTTCCGAG
ATGGGCACGACGGACAGCTACACAAGCTTCACGATTCGTGTGCCGGACGA
GTCCCTCCGGTGCAGACTCGAGGGCAGCAGGCGTTATCGCGCCGGGACAC
CCGGTTTCGTGAGACGACAGATTTTTGGGAGGCACCTGGCAGTCCTCCAT
CAGCTCCTCGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig928:20624..20938+

>mRNA_Ecto-sp9_F_contig928.17440.1 ID=mRNA_Ecto-sp9_F_contig928.17440.1|Name=mRNA_Ecto-sp9_F_contig928.17440.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:20624..20938+ (Ectocarpus species9 EcSCA_722f female)
CTCCGTGTCTCTCCGTCCACATATCTCCGAAGAACATGTTTCAACTCTTT
TTGCTCGTATTCCCTCGTAACGCGCAAATTGACTGGACAGGTTGGTGTGG
AGGCGACAGCGGATGGCGGTGAATGGGGGGTGGACAGTCCTTCTTCCGAG
ATGGGCACGACGGACAGCTACACAAGCTTCACGATTCGTGTGCCGGACGA
GTCCCTCCGGTGCAGACTCGAGGGCAGCAGGCGTTATCGCGCCGGGACAC
CCGGTTTCGTGAGACGACAGATTTTTGGGAGGCACCTGGCAGTCCTCCAT
CAGCTCCTCGCCGAGCTCCGTGTCTCTCCGTCCACATATCTCCGAAGAAC
ATGTTTCAACTCTTTTTGCTCGTATTCCCTCGTAACGCGCAAATTGACTG
GACAGGTTGGTGTGGAGGCGACAGCGGATGGCGGTGAATGGGGGGTGGAC
AGTCCTTCTTCCGAGATGGGCACGACGGACAGCTACACAAGCTTCACGAT
TCGTGTGCCGGACGAGTCCCTCCGGTGCAGACTCGAGGGCAGCAGGCGTT
ATCGCGCCGGGACACCCGGTTTCGTGAGACGACAGATTTTTGGGAGGCAC
CTGGCAGTCCTCCATCAGCTCCTCGCCGAG
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